Sequence of DPV Bhendi yellow vein mosaic virus
Bhendi yellow vein mosaic virus isolate Ok2, complete genome.
ACC No: JX678966
Dated: 2013-01-28 | Length: 2740 | CRC: -921396545
ID JX678966; SV 1; circular; genomic DNA; STD; VRL; 2740 BP.
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AC JX678966;
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DT 16-OCT-2012 (Rel. 114, Created)
DT 28-JAN-2013 (Rel. 115, Last updated, Version 2)
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DE Bhendi yellow vein mosaic virus isolate Ok2, complete genome.
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KW .
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OS Bhendi yellow vein mosaic virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2740
RA Tsai W.S., Shih S.L., Lee L.M., Wang J.T., Duangsong U., Kenyon L.;
RT "First Report of Bhendi yellow vein mosaic virus Associated with Yellow
RT Vein Mosaic of Okra (Abelmoschus esculentus) in Thailand";
RL Plant Dis. 97(2):291-291(2013).
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RN [2]
RP 1-2740
RA Tsai W.S., Shih S.L., Lee L.M., Wang J.T., Duangsong U., Kenyon L.;
RT ;
RL Submitted (10-SEP-2012) to the INSDC.
RL Virology, AVRDC-The World Vegetable Center, P.O. Box 42, Shanhua, Tainan
RL 74199, Taiwan, R.O.C.
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CC ##Assembly-Data-START##
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .2740
FT /organism="Bhendi yellow vein mosaic virus"
FT /host="okra"
FT /isolate="Ok2"
FT /mol_type="genomic DNA"
FT /country="Thailand:Kanchanaburi"
FT /collection_date="2009"
FT /db_xref="taxon:120168"
FT gene 121. .486
FT /gene="V2"
FT CDS 121. .486
FT /codon_start=1
FT /gene="V2"
FT /product="pre-coat protein"
FT /protein_id="AFU83190.1"
FT /translation="MWDPLLNEFPDTVHGFRCMLSVKYLQLLSQDYSPDTLGYDLIRDL
FT ICILRSRNYVEASCRYRHFYARVESTSASELRQPIHQPCCCSHCPRHKTTGMDKQAYEQ
FT EAQNVSDVQKSGCSKGL"
FT gene 281. .1051
FT /gene="V1"
FT CDS 281. .1051
FT /codon_start=1
FT /gene="V1"
FT /product="coat protein"
FT /note="CP"
FT /protein_id="AFU83187.1"
FT /translation="MSKRAADIVISTPASKVRRRLNFGSPYTSRVAAPIVRVTKQQAWT
FT NRPMNRKPRMYRMYRSPDVPKGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGVGLTHR
FT IGKRFCVKSVYVLGKIWMDENIKTKNHTNSVIFFLVRDRRPTGTPQDFGEVFNMFDNEP
FT STATVKNSHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH
FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN"
FT gene complement(1054. .1458)
FT /gene="C3"
FT CDS complement(1054. .1458)
FT /codon_start=1
FT /gene="C3"
FT /product="C3 protein"
FT /protein_id="AFU83189.1"
FT /translation="MDSRTGARITAAQAKNGVYIWKVPNPLYFKILNHDNRPFTTNMDI
FT ITMRIHFNYNLRKALGIHKCFLTFRIWTTLHPQTGLFLRVFKTQVLKYLNNLGVISINL
FT VIKAVEHVLYNVINQTMYVDQYSDIKFKLY"
FT gene complement(1151. .1603)
FT /gene="C2"
FT CDS complement(1151. .1603)
FT /codon_start=1
FT /gene="C2"
FT /product="C2 protein"
FT /protein_id="AFU83188.1"
FT /translation="MQHSSFSPNRCTRVPIKVQHREAKRRIRRRRVDLECGCSYYLSIN
FT CHNHGFSHRGTHHCSSSKEWRLYLEGSKSPLFQDPQPRQPSIHDEHGHHNNEDPFQLQP
FT TESSGNTQVFSNLPNLDDLTPSDWSFLKGIQNPSTQVSQQSRCNLN"
FT gene complement(1500. .2588)
FT /gene="C1"
FT CDS complement(1500. .2588)
FT /codon_start=1
FT /gene="C1"
FT /product="replication-associated protein"
FT /protein_id="AFU83186.1"
FT /translation="MPSKRFQIYSKNYFLTYPKCSLTKEEALSQIQNLHTPTNKKFIKI
FT CRELHENGEPHLHVLIQFEGKYKCQNQRFFDLVSPSRSVHFHPNIQGAKSSSDVKSYID
FT KDGDTLEWGEFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIRELAPKDYVLQFHN
FT LNANLDRIFTPPMEVYVSPFLSSSFDQVPEELEEWVSENVMDAAARPLRPLSLVLEGDS
FT RTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWFNIIDDVDPHYLKHFKEFMGAQRDWQ
FT SNTKYGKPVQIKGGIPTIFLCNPGPNASYKEFLDEEKNSALKAWALKNAAFVFLTEPLY
FT SGTNQSTAQGSEETHQEEESRS"
FT gene complement(2132. .2434)
FT /gene="C4"
FT CDS complement(2132. .2434)
FT /codon_start=1
FT /gene="C4"
FT /product="C4 protein"
FT /protein_id="AFU83191.1"
FT /translation="MGNLICTCSSSSRANTSARISDSSTWSPQAGQYISIRTFRELNQA
FT QMSSPTSTRTETPSNGESFRSMDDLQEGDSKQPTTLTPQHLTQAVSQRLLESLGS"
XX
SQ Sequence 2740 BP; 721 A; 549 C; 641 G; 829 T; 0 other;
jx678966 Length: 2740 28-JAN-2013 Type: N Check: 2097 ..
1 accggatggc cgcgcgattt tttaaagtgg tgggtccaga acgcacgacg
51 atgcagactc aaagcttaga taacgctcct tcggctataa gtacgtgcgc
101 actaagtttc aattcaaaaa atgtgggatc cactattaaa cgaatttccg
151 gatacggttc acgggtttcg ttgtatgcta tctgtaaaat atttgcaact
201 tttgtcgcag gattattctc cagatacgct tgggtacgat ttaatacggg
251 atttaatttg tattttacgc tcccgtaatt atgtcgaagc gagctgccga
301 tatcgtcatt tctacgcccg cgtcgaaagt acgtcggcgt ctgaacttcg
351 gcagcccata caccagccgt gttgctgctc ccattgtccg cgtcacaaaa
401 caacaggcat ggacaaacag gcctatgaac aggaagccca gaatgtatcg
451 gatgtacaga agtccggatg ttccaaaggg ttgtgagggt ccctgtaagg
501 tacaatcctt tgagtctaga cacgatgttg tccatattgg taaggtaatg
551 tgtatttctg atgttacgcg tggagtcggt ttgacccatc gtataggtaa
601 gcgtttttgt gtcaagtcag tttatgtttt aggtaagata tggatggacg
651 agaacatcaa gaccaagaat cacacgaaca gtgtcatttt tttccttgtc
701 cgtgatcgac gtcctactgg gacccctcag gattttggag aggtttttaa
751 catgtttgac aacgaaccca gtacggcgac cgtgaagaat agtcataggg
801 atcgttacca ggtgttgagg aaatggcatg caaccgtcac gggtggtcaa
851 tatgcgagta aggaacaagc gttggtcaag aagtttgtca gggttaacaa
901 ttatgttgtt tacaatcaac aggaagcagg aaaatacgag aatcatacgg
951 agaatgcgtt aatgctttat atggcttgta cccacgctag taacccagtg
1001 tatgctacgc ttaagattcg tatttatttt tatgactctg taacgaattg
1051 aaattaataa agtttgaatt ttatatctga atattggtct acatacattg
1101 tttgattaat tacattgtac aatacatgtt caacggcttt aataactaaa
1151 ttaattgaga ttacacctag attgttgaga tacttgagta cttgggtttt
1201 gaataccctt aagaaaagac cagtctgagg gtgtaaggtc gtccagattc
1251 ggaaggttag aaaacacttg tgtattccca gagctttccg taggttgtag
1301 ttgaaatgga tcctcattgt tatgatgtcc atgttcgtcg tgaatggacg
1351 gttgtcgtgg ttgaggatct tgaaatagag gggatttgga accttccaga
1401 tatagacgcc attctttgct tgagctgcag tgatgcgtgc ccctgtgcga
1451 gaatccatgg ttgtggcagt tgatagagag ataataagaa cacccgcatt
1501 caagatctac tctcctcctc ctgatgcgtc tcttcgcttc cctgtgctgt
1551 actttgattg gtacccgagt acaacggttc ggtgagaaag acgaatgctg
1601 cattttttaa agcccacgct tttaaagctg agttcttttc ctcgtccaag
1651 aactctttat agcttgcgtt ggggcctgga ttgcatagga agattgttgg
1701 aatgccgcct ttaatttgaa ctggcttccc gtacttggtg tttgattgcc
1751 agtccctttg ggcccccatg aattctttaa agtgtttcag ataatgcggg
1801 tcaacatcat ctataatgtt gaaccacgca tcgtttgaat acactttagg
1851 gcttagatct aggtgaccac acaaatagtt atgtgggcct aatgacctag
1901 cccacatcgt tttgcccgta cgactgtctc cctctaagac taaactcaaa
1951 ggacgcagag gccgcgcagc ggcgtccatg acgttttccg atacccattc
2001 ctcaagttct tctggaactt gatcgaaaga agaagataaa aaaggagaaa
2051 cataaacctc catgggaggt gtaaaaatcc tatctaaatt ggcgtttaaa
2101 ttatgaaatt gtaatacata atccttaggt gctaactccc taatgactct
2151 aagagcctct gacttactgc ctgcgttaag tgctgcggcg taagcgtcgt
2201 tggctgtttg ctgtccccct cttgcagatc gtccatcgat ctgaaactct
2251 ccccattcga gggtgtctcc gtccttgtcg atgtaggact tgacatctga
2301 gcttgattta gctccctgaa tgttcggatg gaaatgtact gacctgcttg
2351 gggagaccag gtcgaagaat cgctgattct ggcacttgta tttgccctcg
2401 aactggatga gcacgtgcag atgaggttcc ccattctcgt gaagctctct
2451 gcagatcttg atgaattttt tatttgttgg agtgtgtagg ttttgtattt
2501 gggaaagtgc ttcttcttta gtaagagagc attttggata agtgaggaaa
2551 taatttttgg aatatatttg aaagcgttta gaaggcatgt tgactaaaat
2601 tgagtaccga ttgactcgct ctggcaactc tctctggtat atcggtaccc
2651 aatatatagt gagtaccaaa tggcatatgt gtaattttgc aatgaaattc
2701 aaaatcctca cgttccaaaa gcggccatcc gtataatatt