Sequence of DPV Sida golden mosaic Lara virus

Sida golden mosaic Lara virus strain Venezuela:Lara:M1:2009 segment DNA-B NSP (BV1) and MP (BC1) genes, complete cds.

ACC No: JX857694

Dated: 2012-12-16 | Length: 2258 | CRC: 812117716

                
ID   JX857694; SV 1; linear; genomic DNA; STD; VRL; 2258 BP.
XX
AC   JX857694;
XX
DT   16-DEC-2012 (Rel. 115, Created)
DT   16-DEC-2012 (Rel. 115, Last updated, Version 1)
XX
DE   Sida golden mosaic Lara virus strain Venezuela:Lara:M1:2009 segment DNA-B
DE   NSP (BV1) and MP (BC1) genes, complete cds.
XX
KW   .
XX
OS   Sida golden mosaic Lara virus
OC   Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC   unclassified Begomovirus.
XX
RN   [1]
RP   1-2258
RA   Zambrano K.A., Marys E.E., Mendez N.;
RT   "Begomovirus infecting Sida sp. in Venezuela";
RL   Unpublished.
XX
RN   [2]
RP   1-2258
RA   Zambrano K.A., Marys E.E., Mendez N.;
RT   ;
RL   Submitted (22-SEP-2012) to the INSDC.
RL   CMBC, IVIC, C/Panamericana km 11, Caracas, Caracas 1020-A, Venezuela
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2258
FT                   /organism="Sida golden mosaic Lara virus"
FT                   /segment="DNA-B"
FT                   /host="Sida sp."
FT                   /strain="Venezuela:Lara:M1:2009"
FT                   /mol_type="genomic DNA"
FT                   /country="Venezuela:Lara"
FT                   /collected_by="Zambrano, K"
FT                   /collection_date="2009"
FT                   /db_xref="taxon:1002681"
FT   gene            584. .1354
FT                   /gene="BV1"
FT   CDS             584. .1354
FT                   /codon_start=1
FT                   /gene="BV1"
FT                   /product="NSP"
FT                   /note="nuclear shuttle protein"
FT                   /protein_id="AFZ77104.1"
FT                   /translation="MYYFRNKRGFSYTRRQPYQRNPVFKRAMSGKTYNVKRRVDSGNRP
FT                   VDEPKMKAQRIHENQFGPEFMMAHNTAISTYISYPSLGKTEPNRTRSYIKLKRLRFKGT
FT                   VKVERVQSDVNMDGSTSKTEGVFSLVVVVDRKPHLNASGRLHTFDELFGARIHSHGTLA
FT                   ITPELNDRFYIRHVSKRVLSADNDTMMVDLNGSVSLSNRRFSCWSGFNDFERDSCNGVY
FT                   SNISKNALLVYYCWMSDIMSKASSFVSFDLDYFG"
FT   gene            complement(1412. .2140)
FT                   /gene="BC1"
FT   CDS             complement(1412. .2140)
FT                   /codon_start=1
FT                   /gene="BC1"
FT                   /product="MP"
FT                   /note="movement protein"
FT                   /protein_id="AFZ77105.1"
FT                   /translation="MKIDHCVIEYRQQVPINASGTVIVEIHDKRMTDDESLQASWTFPI
FT                   RCNIDLHYFSSSFFSLKDPIPWKLYYRVSDTNVHQRTHFAKFKGKLKLSTAKHSVDIPF
FT                   RAPTVKILSKQFTEKDVDFSHVDYGKWERKPIRCASMSRLGLRGPLELRPGESWASRST
FT                   IGVGQSDADSEADNELHPYRHLSRPGTNVLDPGESASIVGAQRAESNFTMSVAQISELV
FT                   RTTVQECINQNCQPSQAKTL"
XX
SQ   Sequence 2258 BP; 579 A; 482 C; 492 G; 705 T; 0 other;

jx857694 Length: 2258  16-DEC-2012  Type: N  Check: 9207  ..

       1  gataaaggga agaactcgaa atgggaaagt gttgttttag catgtcagat
      51  ctaacaaata ttatatagac agtcatatat atgtttttaa tggcagtttg
     101  gtaaatatgg ctttggacac cactggtgtc tctcaacatt tacgcatatt
     151  gttggtgtct ggtgtcccat ttatacataa agccttctgg aggacacgtg
     201  ttgcaaatcc aacgacggcc atccgcacta atattaccgg atggccgcga
     251  ttttttggtg tcctcatcgc tcccgctcct ggtgccacct gtcccgtacc
     301  cgtacccccc tcctgatggt gctacgtggc gtctcagcga ccattggata
     351  aatttaataa ctatatcgcg cgagttcagc ttaattttga attaaagtgc
     401  gcggttggtc aaagttggac ccattgtact atctgactga cgtggtcgat
     451  tttagaccat gctgctttgt ctatttattt ttatcttgaa cagcaccttt
     501  tatatataat gggtcctgat ggtatattat attcaactgt cgaagttgat
     551  attcacgttt atattattag ctatgtttga ataatgtatt atttcaggaa
     601  taaacgtggt ttctcataca ctcgacgaca accttatcaa cgtaaccccg
     651  tgtttaagcg agcaatgtct ggcaaaacat acaatgttaa acgtcgagtt
     701  gatagtggta acaggcctgt tgatgagccc aagatgaaag cgcaacgcat
     751  acatgagaat cagtttgggc cggaattcat gatggcccat aatacagcaa
     801  tatcgactta catttcctat ccaagcttgg gcaagacaga acctaatcga
     851  accaggtctt atatcaagtt gaaacgactt cgttttaaag gcactgtcaa
     901  ggttgaacgt gttcaatccg atgttaacat ggacggttca acatccaaaa
     951  cagaaggtgt cttctccctc gttgtggttg tggatcgtaa gcctcatctg
    1001  aacgcctctg gacgcctgca cacattcgac gagctatttg gtgcaaggat
    1051  ccacagccat ggtaccttgg ccataacccc agaactgaac gaccgcttct
    1101  atatacgaca cgtgtcaaag cgtgttttat ccgctgataa tgacactatg
    1151  atggtcgact tgaatggttc tgtcagtcta tctaacaggc gttttagttg
    1201  ttggtcaggc tttaacgatt ttgaacggga ttcatgtaac ggtgtttatt
    1251  ctaacattag caaaaacgcc ctgttggttt attattgttg gatgtctgac
    1301  atcatgtcca aagcatctag ttttgtatca tttgaccttg actattttgg
    1351  ttgaaggcaa attaatatta atgaaattaa tatttaaaat atactcaaag
    1401  ctgataatat atcataatgt tttagcctga gaaggctgac agttttgatt
    1451  tatacattcc tgaacagttg tcctaactag ctcgcttatt tgtgccacgg
    1501  acattgtgaa atttgattcc gctctttggg cccccactat cgaagcagac
    1551  tctcctggat ccagcacgtt ggttccgggt ctgctcagat gcctgtatgg
    1601  atgcagttcg ttgtctgcct ctgagtccgc atctgattga cccactccta
    1651  ttgtactcct ggaagcccat gactctccag gccttagttc aagtgggcct
    1701  ctgagcccaa gtcttgacat ggacgcacat ctgatgggct tcctttccca
    1751  ttttccatag tcgacgtgtg agaagtccac atccttttct gtgaactgtt
    1801  tggacagtat ctttactgtt ggtgcccgga aggggatatc cactgagtgt
    1851  ttagccgtcg acagtttcag cttccctttg aatttggcga agtgggttct
    1901  ctggtgaaca ttcgtgtctg acactctgta gtatagcttc catggaattg
    1951  ggtctttgag agagaagaag gaagatgaaa aatagtggag atctatgtta
    2001  cagcggatcg gaaaagtcca tgacgcctgc aatgactcat cgtctgtcat
    2051  cctcttgtca tgaatctcca ctatcactgt cccagaagcg ttgattggta
    2101  cttgctgcct gtactctatc acacagtgat cgattttcat acaactacga
    2151  cttagccttg ctgtaatctg ggcagctgtg gaaggaaatt gaaggattat
    2201  ctcagttaag tcatggcaga gttgatattc atctctgtgc gactctatgt
    2251  aattgaaa