Sequence of DPV Tomato severe rugose virus
Tomato severe rugose virus isolate BR:Vic03:09 segment DNA-A, complete sequence.
ACC No: JX865617
Dated: 2013-01-23 | Length: 2593 | CRC: -333997349
ID JX865617; SV 1; circular; genomic DNA; STD; VRL; 2593 BP.
XX
AC JX865617;
XX
DT 19-DEC-2012 (Rel. 115, Created)
DT 23-JAN-2013 (Rel. 115, Last updated, Version 2)
XX
DE Tomato severe rugose virus isolate BR:Vic03:09 segment DNA-A, complete
DE sequence.
XX
KW .
XX
OS Tomato severe rugose virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2593
RA Gonzalez-Aguilera J., Tavares S.S., Sobrinho R.R., Xavier C.A.D.,
RA Duenas-Hurtado F., Lara-Rodrigues R.M., da Silva D.J.H., Zerbini F.M.;
RT "Genetic structure of a Brazilian population of the begomovirus Tomato
RT severe rugose virus (ToSRV)";
RL Trop Plant Pathol 37(5):346-353(2012).
XX
RN [2]
RP 1-2593
RA Gonzalez-Aguilera J., Tavares S.S., Ramos-Sobrinho R., Xavier C.A.D.,
RA Duenas-Hurtado F., Lara-Rodrigues R.M., Silva D.J.H., Zerbini F.M.;
RT ;
RL Submitted (25-SEP-2012) to the INSDC.
RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P. H. Rolfs,
RL s/n, Vicosa, Minas Gerais 36570-000, Brazil
XX
CC ##Assembly-Data-START##
CC Assembly Method :: DNAMan v. 6.0
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
XX
FH Key Location/Qualifiers
FH
FT source 1. .2593
FT /organism="Tomato severe rugose virus"
FT /segment="DNA-A"
FT /host="Solanum lycopersicum"
FT /isolate="BR:Vic03:09"
FT /mol_type="genomic DNA"
FT /country="Brazil"
FT /db_xref="taxon:158463"
FT CDS 171. .926
FT /codon_start=1
FT /product="CP"
FT /note="coat protein"
FT /protein_id="AGA16329.1"
FT /translation="MPKRDAPWRLTAGTSKVSRSVNFSPRAGYGPKYNKAAEWVNRPMY
FT RKPRIYRTLRGPDVPRGCEGPCKVQSYESRHDVSHVGKVICVSDVTRGNGITHRVGKRF
FT CVKSVYILGKVWMDESIKLKNHTNSVMFWLVRDRRPYSTPMDFGQVFNMFDNEPSTATV
FT KNDLRDRFQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENAL
FT LLYMACTHASNPVYATLKIRIYFYDSITN"
FT CDS complement(923. .1321)
FT /codon_start=1
FT /product="REN"
FT /note="replication-enhancer protein"
FT /protein_id="AGA16331.1"
FT /translation="MDSRTGELITARQAENGVYIWEISNPLYFKINRVEDPMYTASRVY
FT HVQIRFNHNLRRALHLHKSFLNFQIWTTSLTASGTTYLTRFKYLVLLYLDRLGVISINN
FT VIRAVRFATDKSYVNAVLENHSIKFKFY"
FT CDS complement(1068. .1457)
FT /codon_start=1
FT /product="TRAP"
FT /note="transactivating protein"
FT /protein_id="AGA16327.1"
FT /translation="MRNSSSLTPPSIKVQHRAAKKRGIRRRRIDIECGCSIYVHIDCRG
FT HGFTHRGTHHCTSGREWRLYLGDIKSPLFQDKQSGGSNVHREQSLPRPNTVQPQPEESI
FT ASPQELPQLPDMDDFTDSFWDDIFN"
FT CDS complement(1399. .2457)
FT /codon_start=1
FT /product="REP"
FT /note="replication-associated protein"
FT /protein_id="AGA16330.1"
FT /translation="MPSAPKRFQIKAKNYFLTYPKCSLSKEEALSQLKTLNTPTNKKFI
FT KVCRELHENGEPHLHVLLQFEGNYCCQNQRFFDLVSPTRSTHFHPNIQRAKSSSDVKSY
FT VDKDGDTIEWGEFQIDGRSARGGCQTANDAAAEALNAPSKDVALQIIREKLPEKFLFQF
FT HNLNSNLDRIFTRAPEPWAPTFPLSSFTTVPREMQAWADDYFGRGAAARPERPISIIIE
FT GDSRTGKTMWARALGAHNYLSGHLDFNPRVYSNHVEYNVIDDIAPHYLKLKHWKELLGA
FT QKDWQSNCKYGKPVQIKGGIPCIVLCNPGEGASYKCFLDKEENASLNNWTKHNAKFVFL
FT NTPLYQGTTQSC"
FT CDS complement(2040. .2303)
FT /codon_start=1
FT /product="AC4"
FT /note="AC4 protein"
FT /protein_id="AGA16328.1"
FT /translation="MKMGSLISTCFFNLRATTAAKINDSSTWSPQQGQHISIRTFRELS
FT HRPTSNPMSTKTEILSSGGNSKSTEEVQEAVARQLTTLPQKP"
XX
SQ Sequence 2593 BP; 660 A; 529 C; 601 G; 803 T; 0 other;
jx865617 Length: 2593 23-JAN-2013 Type: N Check: 9707 ..
1 accggatggc cgcgcgattt ttcacccctt tagtttcaat taaagtaaag
51 tgattgtctg tggcccaatc atattgggcc tgtcgagctt agatatttgt
101 aacaacttaa ggcccaagtt gttaaacggc tataaattga acatacactt
151 tactttttct ttaattcaaa atgcctaagc gtgatgcccc atggcgttta
201 acggcgggaa cttcaaaggt ttcccgctct gtcaattttt ctccccgtgc
251 aggatatgga cccaaatata acaaggccgc tgagtgggtg aacaggccca
301 tgtacaggaa gcccaggatc taccgtactt tgagaggccc agatgttcct
351 agaggctgtg aagggccttg taaggttcag tcttacgagt ctcgtcatga
401 tgtttcccat gttgggaagg tgatttgtgt gtctgacgtt acacgtggta
451 acggtattac tcaccgtgtt ggtaagcgtt tctgcgtgaa gtctgtatat
501 attttaggga aggtatggat ggacgagagc atcaagttga agaatcacac
551 aaatagtgtg atgttctggt tggttagaga tcggagacct tattcgacac
601 ctatggattt tggccaggtg tttaacatgt ttgacaacga gcctagcact
651 gcaactgtta agaacgatct tcgggatcgt tttcaggtca tgcacaagtt
701 ttatgccaag gttactggtg gacagtatgc cagtaatgag caggcattag
751 tgaagcgctt ttggaaggtc aacaaccacg tagtctacaa ccatcaggag
801 gcagggaaat acgagaatca tactgagaac gccttgctat tgtatatggc
851 atgtactcat gcctctaacc ccgtgtatgc tacattgaaa attcggatct
901 atttttatga ttcgattact aattaataaa atttaaattt tattgaatga
951 ttttcgagta cagcatttac atatgatttg tctgttgcga aacgaacagc
1001 tctgattaca ttattaatgg aaataacgcc taaacgatct agatacaata
1051 agactaaata tttaaatcta gttaaatatg tcgtcccaga agctgtcagt
1101 gaagtcgtcc atatctggaa gttgaggaag ctcttgtgga gatgcaatgc
1151 tctcctcagg ttgtggttga accgtatttg gacgtggtag actctgctcg
1201 cggtgtacat tggatcctcc actctgttta tcttgaaata gaggggattt
1251 gatatctccc aaatatagac gccattctct gcctgacgtg cagtgatgag
1301 ttcccctgtg cgtgaatcca tgtcctctgc agtcgatgtg tacgtaaata
1351 gagcacccgc actctatatc aattcgtcgt ctcctgattc ctcgtttttt
1401 agcagctctg tgttgtacct tgatagaggg gggtgttaag gaagacgaat
1451 ttcgcattgt gctttgtcca attatttaga cttgcatttt cttctttgtc
1501 gaggaaacat ttatagctgg ccccctcgcc aggattgcaa agcacgatgc
1551 atgggatacc acctttaatt tgaactggct ttccgtattt gcagtttgat
1601 tgccaatcct tttgggcccc aagcaattct ttccaatgct ttaactttag
1651 atagtgcggt gcgatgtcat caatgacgtt atattcaaca tgatttgaat
1701 aaaccctagg attgaaatct aggtgtccac tcaaataatt atgggcccct
1751 aatgcacgtg cccacatcgt ctttcccgtt cgagaatcac cttcaatgat
1801 gatactaata ggtcgttccg gccgcgcagc ggcacctctc ccaaaatagt
1851 catctgccca agcttgcatc tctctcggta cggtagtgaa agaggagagg
1901 ggaaacgtag gggcccatgg ctccggagcc cttgtaaata tcctatctaa
1951 attactattt agattgtgaa actgaaataa gaacttttca ggcagcttct
2001 cacggattat ctgcaaggcg acgtctttgg aaggtgcgtt caaggcttct
2051 gcggcagcgt cgttagctgt ctggcaaccg cctcttgcac ttcttccgtc
2101 gatttggaat tccccccact cgatagtatc tccgtctttg tcgacatagg
2151 atttgacgtc ggacgatgac ttagctctct gaatgttcgg atggaaatgt
2201 gttgaccttg ttggggagac caggtcgaag aatcgttgat tttggcagca
2251 gtagttgccc tcaaattgaa gaagcacgtg gagatgaggc tccccatttt
2301 catggagctc cctgcaaacc ttgatgaact ttttatttgt aggagtgttt
2351 agggttttta attgggaaag tgcttcttct ttcgataatg agcatttggg
2401 atatgtgagg aaataattct tcgcttttat ttgaaagcgc tttggagctg
2451 atggcatatt tgtaaatatg actcctacta ccaattggta gctgctctaa
2501 aactcatatg aattggtagt tatggtagct cttatatagt agaagttctc
2551 tttaaggaga ttgctacacg tggcggccat ccgttataat att