Sequence of DPV Pepino mosaic virus

Pepino mosaic virus isolate VFTX12-09 coat protein gene, complete cds.

ACC No: JX866612

Dated: 2013-04-19 | Length: 714 | CRC: -1856643103

                
ID   JX866612; SV 1; linear; genomic RNA; STD; VRL; 714 BP.
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AC   JX866612;
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DT   19-APR-2013 (Rel. 116, Created)
DT   19-APR-2013 (Rel. 116, Last updated, Version 1)
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DE   Pepino mosaic virus isolate VFTX12-09 coat protein gene, complete cds.
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KW   .
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OS   Pepino mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales;
OC   Alphaflexiviridae; Potexvirus.
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RN   [1]
RC   Publication Status: Online-Only
RP   1-714
RX   PUBMED; 23587202.
RA   Ling K.S., Li R., Bledsoe M.;
RT   "Pepino mosaic virus genotype shift in North America and development of a
RT   loop-mediated isothermal amplification for rapid genotype identification";
RL   Virol J 10(1):117-117(2013).
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RN   [2]
RP   1-714
RA   Ling K.-S., Li R., Bledsoe M.;
RT   ;
RL   Submitted (23-SEP-2012) to the INSDC.
RL   Virology Laboratory, USDA-ARS, U.S. Vegetable Laboratory, 2700 Savannah
RL   Highway, Charleston, SC 29414, USA
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CC   ##Assembly-Data-START##
CC   Assembly Method       :: DNASTAR v. Lasergene10
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
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FH   Key             Location/Qualifiers
FH
FT   source          1. .714
FT                   /organism="Pepino mosaic virus"
FT                   /host="Solanum lycopersicum"
FT                   /isolate="VFTX12-09"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:112229"
FT   CDS             1. .714
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /protein_id="AFZ62512.1"
FT                   /translation="MPDTTPVAATSSAPPTAKDAGAKAPSDFSNPNTAPSLSDLKKVKY
FT                   VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN
FT                   PALSRRALAAQFDRINITPRQFCMYFAKVVWNILLDSNIPPANWAKLGYQEDTKFAAFD
FT                   FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM
FT                   GGANTMYAIDAPPEL"
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SQ   Sequence 714 BP; 195 A; 200 C; 150 G; 169 T; 0 other;

jx866612 Length: 714  19-APR-2013  Type: N  Check: 6013  ..

       1  atgcctgaca caacacctgt tgctgctact tcaagtgcac cacccacagc
      51  caaagatgct ggtgccaaag ctccttctga cttctcaaat cccaatacag
     101  ctcctagtct cagtgatttg aagaaagtca agtatgtctc cacagtgacc
     151  tccgtggcca caccagctga aattgaagcc ctaggcaaaa tcttcaccgc
     201  tatgggcctt gctgccaatg agactggtcc ggccatgtgg gatctagctc
     251  gtgcatatgc tgacgtgcag agttctaaat cggcacagct gattggagct
     301  accccttcca accctgcact atcacgccga gcccttgctg ctcagtttga
     351  tcgaatcaat ataaccccaa ggcaattttg catgtacttt gccaaagttg
     401  tttggaacat acttctcgac agcaatattc caccagcaaa ttgggccaaa
     451  cttggttacc aagaagatac aaaatttgct gcatttgact tcttcgatgg
     501  agtcaccaac cctgccagcc tgcagcctgc tgatggtctt atcaggcagc
     551  caaatgagaa agaactagct gctcactccg tagctaagta cggcgccttg
     601  gctaggcaaa agatctccac aggtaattat attaccacac ttggagaagt
     651  cacacgtgga cacatgggag gagctaacac catgtacgcg atagacgcac
     701  cccctgaact ttaa