Sequence of DPV Pepino mosaic virus

Pepino mosaic virus isolate BNMX12-06 coat protein gene, complete cds.

ACC No: JX866624

Dated: 2013-04-19 | Length: 714 | CRC: 662562412

                
ID   JX866624; SV 1; linear; genomic RNA; STD; VRL; 714 BP.
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AC   JX866624;
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DT   19-APR-2013 (Rel. 116, Created)
DT   19-APR-2013 (Rel. 116, Last updated, Version 1)
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DE   Pepino mosaic virus isolate BNMX12-06 coat protein gene, complete cds.
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KW   .
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OS   Pepino mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales;
OC   Alphaflexiviridae; Potexvirus.
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RN   [1]
RC   Publication Status: Online-Only
RP   1-714
RX   PUBMED; 23587202.
RA   Ling K.S., Li R., Bledsoe M.;
RT   "Pepino mosaic virus genotype shift in North America and development of a
RT   loop-mediated isothermal amplification for rapid genotype identification";
RL   Virol J 10(1):117-117(2013).
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RN   [2]
RP   1-714
RA   Ling K.-S., Li R., Bledsoe M.;
RT   ;
RL   Submitted (23-SEP-2012) to the INSDC.
RL   Virology Laboratory, USDA-ARS, U.S. Vegetable Laboratory, 2700 Savannah
RL   Highway, Charleston, SC 29414, USA
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CC   ##Assembly-Data-START##
CC   Assembly Method       :: DNASTAR v. Lasergene10
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
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FH   Key             Location/Qualifiers
FH
FT   source          1. .714
FT                   /organism="Pepino mosaic virus"
FT                   /host="Solanum lycopersicum"
FT                   /isolate="BNMX12-06"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:112229"
FT   CDS             1. .714
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /protein_id="AFZ62524.1"
FT                   /translation="MVDNTPVAATSGSPPTAQDAGAKAPADFSNPNTAPSLSDLKKVKY
FT                   VSTVTSVATPTEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN
FT                   PALSRRALAAQFDRINITPRQFCMYFAKIVWNILLDSNIPPANWAKLGYQEDTKFAAFD
FT                   FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM
FT                   GGANTMYAIDAPPEL"
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SQ   Sequence 714 BP; 198 A; 201 C; 146 G; 169 T; 0 other;

jx866624 Length: 714  19-APR-2013  Type: N  Check: 6528  ..

       1  atggttgaca ataccccagt tgctgctact tctggttccc ctccaactgc
      51  tcaagatgct ggtgccaaag cccctgctga cttttcaaat cctaatacag
     101  ctcctagcct cagtgatttg aagaaagtca agtatgtgtc cacagtcact
     151  tcagtggcaa caccaactga aatagaagcc ctcggaaaga tcttcaccgc
     201  catgggactg gctgctaatg aaactggacc cgctatgtgg gatctagcgc
     251  gtgcttatgc tgatgtccaa agttcaaaat ccgcacaact cataggtgcc
     301  accccctcaa atccagcact ctcacgccgc gcacttgctg cccaatttga
     351  tcgtattaac atcacaccca ggcagttttg catgtatttt gctaaaattg
     401  tctggaacat tctgctagac agcaatatcc caccagcaaa ctgggccaag
     451  cttggttacc aagaagacac aaaatttgct gctttcgatt tcttcgatgg
     501  agtcaccaat ccagcaagtt tgcaaccagc tgacggcctc atccggcaac
     551  ccaatgaaaa ggagcttgct gctcactcag ttgctaagta tggcgcacta
     601  gccaggcaga aaatttccac tggcaactac ataaccacac ttggagaggt
     651  cacacgtgga cacatgggtg gagctaacac catgtacgca attgatgcac
     701  ccccagaact ttaa