Sequence of DPV Pepino mosaic virus

Pepino mosaic virus isolate CH2_VFTX12-29 coat protein gene, complete cds.

ACC No: JX866654

Dated: 2013-04-19 | Length: 714 | CRC: 2097671229

                
ID   JX866654; SV 1; linear; genomic RNA; STD; VRL; 714 BP.
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AC   JX866654;
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DT   19-APR-2013 (Rel. 116, Created)
DT   19-APR-2013 (Rel. 116, Last updated, Version 1)
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DE   Pepino mosaic virus isolate CH2_VFTX12-29 coat protein gene, complete cds.
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KW   .
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OS   Pepino mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales;
OC   Alphaflexiviridae; Potexvirus.
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RN   [1]
RC   Publication Status: Online-Only
RP   1-714
RX   PUBMED; 23587202.
RA   Ling K.S., Li R., Bledsoe M.;
RT   "Pepino mosaic virus genotype shift in North America and development of a
RT   loop-mediated isothermal amplification for rapid genotype identification";
RL   Virol J 10(1):117-117(2013).
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RN   [2]
RP   1-714
RA   Ling K.-S., Li R., Bledsoe M.;
RT   ;
RL   Submitted (23-SEP-2012) to the INSDC.
RL   Virology Laboratory, USDA-ARS, U.S. Vegetable Laboratory, 2700 Savannah
RL   Highway, Charleston, SC 29414, USA
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CC   ##Assembly-Data-START##
CC   Assembly Method       :: DNASTAR v. Lasergene10
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
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FH   Key             Location/Qualifiers
FH
FT   source          1. .714
FT                   /organism="Pepino mosaic virus"
FT                   /host="Solanum lycopersicum"
FT                   /isolate="CH2_VFTX12-29"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:112229"
FT   CDS             1. .714
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /protein_id="AFZ62554.1"
FT                   /translation="MENQPTASNPSEVPPTAAQAGAQSPADFSNPNTAPSLSDLKKIKY
FT                   VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN
FT                   PALSRRALAAQFDRINITPRQFCMYFAKIVWNILLDSNVPPANWAKLGYQEDTKFAAFD
FT                   FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM
FT                   GGANTMYAIDAPPEL"
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SQ   Sequence 714 BP; 194 A; 192 C; 145 G; 183 T; 0 other;

jx866654 Length: 714  19-APR-2013  Type: N  Check: 1904  ..

       1  atggaaaacc aacctacagc ttctaaccca tcagaagtac caccaactgc
      51  tgctcaagct ggtgcccaga gcccagccga cttctcaaat cctaatacag
     101  ctccttccct aagtgatttg aagaagatca aatacgtgtc aactgtcact
     151  tcagttgcca ctcctgctga aattgaggcc cttggcaaga tctttactgc
     201  catgggttta gcagccaatg agaccggacc tgccatgtgg gacctcgctc
     251  gtgcttatgc tgatgtgcaa agttcaaaat ctgcacaact tataggtgcc
     301  acaccatcca accctgcttt gtctagacgt gcacttgctg cacagtttga
     351  tcgtatcaat atcacaccca gacaattctg catgtatttt gcaaaaattg
     401  tttggaacat actgttagac agcaatgtgc cacctgccaa ctgggcaaaa
     451  ttgggctatc aggaagatac caagtttgct gcttttgact tctttgatgg
     501  agtcacaaat ccagctagtc tacagcctgc tgatggccta atcaggcagc
     551  ccaatgaaaa agagcttgct gctcactcgg ttgctaaata tggtgccctt
     601  gcccgccaga aaatatccac tggtaactac atcaccaccc ttggtgaagt
     651  tacacgtggt cacatgggcg gcgctaacac tatgtacgca attgatgcac
     701  ctcctgaact ttaa