Sequence of DPV Pepino mosaic virus

Pepino mosaic virus isolate VFTX12-35 coat protein gene, complete cds.

ACC No: JX866659

Dated: 2013-04-19 | Length: 702 | CRC: -100139988

                
ID   JX866659; SV 1; linear; genomic RNA; STD; VRL; 702 BP.
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AC   JX866659;
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DT   19-APR-2013 (Rel. 116, Created)
DT   19-APR-2013 (Rel. 116, Last updated, Version 1)
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DE   Pepino mosaic virus isolate VFTX12-35 coat protein gene, complete cds.
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KW   .
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OS   Pepino mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales;
OC   Alphaflexiviridae; Potexvirus.
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RN   [1]
RC   Publication Status: Online-Only
RP   1-702
RX   PUBMED; 23587202.
RA   Ling K.S., Li R., Bledsoe M.;
RT   "Pepino mosaic virus genotype shift in North America and development of a
RT   loop-mediated isothermal amplification for rapid genotype identification";
RL   Virol J 10(1):117-117(2013).
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RN   [2]
RP   1-702
RA   Ling K.-S., Li R., Bledsoe M.;
RT   ;
RL   Submitted (23-SEP-2012) to the INSDC.
RL   Virology Laboratory, USDA-ARS, U.S. Vegetable Laboratory, 2700 Savannah
RL   Highway, Charleston, SC 29414, USA
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CC   ##Assembly-Data-START##
CC   Assembly Method       :: DNASTAR v. Lasergene10
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
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FH   Key             Location/Qualifiers
FH
FT   source          1. .702
FT                   /organism="Pepino mosaic virus"
FT                   /host="Solanum lycopersicum"
FT                   /isolate="VFTX12-35"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:112229"
FT   CDS             1. .702
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /protein_id="AFZ62559.1"
FT                   /translation="MENQPTSEVPPTAAQAGAQSPADFSNPNTAPSLSDLKKIKYVSTV
FT                   TSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSNPALS
FT                   RRALAAQFDRINITPRQFCMYFAKIVWNILLDSNVPPANWAKLGYQEDTKFAAFDFFDG
FT                   VTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHMGGAN
FT                   TMYAIDAPPEL"
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SQ   Sequence 702 BP; 191 A; 187 C; 144 G; 180 T; 0 other;

jx866659 Length: 702  19-APR-2013  Type: N  Check: 5998  ..

       1  atggaaaacc aacctacatc agaagtacca ccaactgctg ctcaagctgg
      51  tgcccagagc ccagccgact tctcaaatcc taatacagct ccttccctaa
     101  gtgatttgaa gaagatcaaa tacgtgtcaa ctgtcacttc agttgccact
     151  cctgctgaaa ttgaggccct tggcaagatc tttactgcca tgggtttagc
     201  agccaatgag accggacctg ccatgtggga cctcgctcgt gcttatgctg
     251  atgtgcaaag ttcaaaatct gcacaactta taggtgccac accatccaac
     301  cctgctttgt ctagacgtgc acttgctgca cagtttgatc gtatcaatat
     351  cacacccaga caattctgca tgtattttgc aaaaattgtt tggaacatac
     401  tgttagacag caatgtgcca cctgccaact gggcaaaatt gggctatcag
     451  gaagatacca agtttgctgc ttttgacttc tttgatggag tcacaaatcc
     501  agctagtcta cagcctgctg atggcctaat caggcagccc aatgaaaaag
     551  agcttgctgc tcactcggtt gctaaatatg gtgcccttgc ccgccagaaa
     601  atatccactg gtaactacat caccaccctt ggtgaagtta cacgtggtca
     651  catgggcggc gctaacacta tgtacgcaat tgatgcacct cctgaacttt
     701  aa