Sequence of DPV Tomato mild mosaic virus
Tomato mild mosaic virus isolate BR:Vic7:10 segment DNA-A, complete sequence.
ACC No: JX871375
Dated: 2013-02-04 | Length: 2720 | CRC: -409315477
ID JX871375; SV 1; circular; genomic DNA; STD; VRL; 2720 BP.
XX
AC JX871375;
XX
DT 04-FEB-2013 (Rel. 115, Created)
DT 04-FEB-2013 (Rel. 115, Last updated, Version 1)
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DE Tomato mild mosaic virus isolate BR:Vic7:10 segment DNA-A, complete
DE sequence.
XX
KW .
XX
OS Tomato mild mosaic virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RP 1-2720
RA Tavares S.S., Ramos-Sobrinho R., Gonzales-Aguilera J., Lima G.S.A.,
RA Assuncao I.P., Zerbini F.M.;
RT "Further molecular characterization of weed-associated begomoviruses in
RT Brazil with an emphasis on Sida spp.";
RL Unpublished.
XX
RN [2]
RP 1-2720
RA Tavares S.S., Ramos-Sobrinho R., Gonzales-Aguilera J., Lima G.S.A.,
RA Assuncao I.P., Zerbini F.M.;
RT ;
RL Submitted (26-SEP-2012) to the INSDC.
RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n,
RL Vicosa, Minas Gerais 36570-000, Brazil
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CC ##Assembly-Data-START##
CC Assembly Method :: DNAman6.0 v. 6.0
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .2720
FT /organism="Tomato mild mosaic virus"
FT /segment="DNA-A"
FT /host="Sida urens"
FT /isolate="BR:Vic7:10"
FT /mol_type="genomic DNA"
FT /country="Brazil"
FT /collection_date="2010"
FT /db_xref="taxon:536086"
FT CDS 308. .1057
FT /codon_start=1
FT /product="coat protein"
FT /note="CP"
FT /protein_id="AGD98577.1"
FT /translation="MPKRDAPWRLMAGTSKVSRSVNYSPRGGPKFNKASEWVNRPMYRK
FT PRIYRTLRSPDVPKGCEGPCKVQSFEARHDVSHVGKVICVSDVTRGNGITHRVGKRFCV
FT KSVYILGKIWMDEAIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNLFDNEPSTATVKS
FT DLRDRFQVMRKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAAKYENHTENAMLL
FT YMACTHASNPVYASLKIRIYFYDSVLN"
FT CDS complement(1054. .1452)
FT /codon_start=1
FT /product="replication-enhancer protein"
FT /note="REN"
FT /protein_id="AGD98578.1"
FT /translation="MDSRTGESITAPQAENGVYIWEISNPLYFKIYNVEDLRYTATRVY
FT HIQIRFNHNLRRMLGLHKAFLNFQVWTTSVRASGTTYLHRFRQLVMLYLDQLGVISLNN
FT VIRAVRFATDKPYVNYVLENHSIKFKFY"
FT CDS complement(1199. .1588)
FT /codon_start=1
FT /product="transactivating protein"
FT /note="TRAP"
FT /protein_id="AGD98579.1"
FT /translation="MLNSSSSTPPSIKTKHRIAKKRATRRRRIDLDCGCSVFVHLNCAG
FT HGFTHRGEHHCTSGREWRIYLGDIKSPLFQDIQRRGSTVHGDQGVPHTDTVQPQPQEDA
FT GSTQGLPELPSLDDISSSFWDDIFT"
FT CDS complement(1500. .2585)
FT /codon_start=1
FT /product="replication-associated protein"
FT /note="REP"
FT /protein_id="AGD98580.1"
FT /translation="MPRKGSFCIKAKNYFLTYPKCSLSKEEALSQLLALNFPVNRKFIK
FT ICRELHDDGEPHLHVLFQFEGKFQCTNNRLFDLVSPTRSAHFHPNIQGAKSASDVKSYV
FT DKDGDTIEWGVFQVDGRSARGGCQTANDAAAEALNAPSKEAALAIIREKLPEKYLFQFH
FT NLNSNLDRMFAKAPEPWSPPFPLSSFTHVPDEMQEWADDYFGRDAAARPSRPVSLIVEG
FT DSRTGKTMWARALGAHNYLSGHLDFNSRVYSNEAEYNVIDDVPPHYLKLKHWKELMGAQ
FT KDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLQKEENASLRSWTLKNAKFIFLD
FT APLYQDQAQDCEEEGYQATQN"
FT CDS complement(2171. .2428)
FT /codon_start=1
FT /product="AC4 protein"
FT /note="AC4"
FT /protein_id="AGD98581.1"
FT /translation="MGSLISTSSSSSKGNSSARIIDSSTLSPQPGQHISIRTFRGLSRR
FT PTSSPMSTRTEIQSNGEFSRSTEEVLEEVARQLTTLPQRP"
XX
SQ Sequence 2720 BP; 659 A; 650 C; 663 G; 748 T; 0 other;
jx871375 Length: 2720 04-FEB-2013 Type: N Check: 2123 ..
1 accggatggc cgcgcgattt tttccccccc ctacgtggcg ctctggaggt
51 cgttcgatcc gatcgaacgt gtcccccctc ccccaaatcc cctcgcgcgc
101 tcaattcagt tgagcgcttt tttggagtcc gcgaaatggg ttcagcgcat
151 tttttgagtt ccgcccttta actttaattt aaattaaagc cttgaccaat
201 catttcgcgt ctgacgagtt tatttagcct aacagaactt aacaacgaag
251 ttgttgaccg accgttataa attaatcatg attggactcg tcagtcttta
301 actcagaatg ccgaagcggg acgccccatg gcgcctgatg gcgggaacct
351 caaaggttag ccgctctgtc aactattccc ctcgtggagg cccaaagttc
401 aacaaggcat ctgagtgggt caacaggccc atgtatagaa agcccaggat
451 atatcggacg ctaaggtcac ctgacgtccc caaaggctgt gaagggcctt
501 gtaaggtcca gtcgttcgag gcgcgacatg atgtctctca tgtcgggaag
551 gtcatatgcg tctctgacgt gacgcgtggt aatggtatta cccatcgtgt
601 gggtaagcgt ttctgtgtta agtctgtata tattttaggg aagatctgga
651 tggatgaagc gatcaagctc aagaaccaca cgaacagcgt catgttctgg
701 ttagtcagag acaggagacc ctacggaact ccaatggatt ttggacaggt
751 gttcaacctg ttcgacaacg agcccagcac tgccactgtt aagagcgatc
801 tccgtgatcg cttccaagtg atgcgcaagt tttacgccaa ggtcacaggt
851 ggacagtacg ctagcaacga gcaggctctg gtcaagcgtt tctggaaggt
901 caacaatcat gtggtctaca accatcaaga agctgcgaag tacgagaacc
951 acacagagaa cgctatgtta ttgtatatgg catgtaccca tgcctctaac
1001 cctgtgtatg cgagtctcaa gattcggatc tacttctacg actcggttct
1051 caattaataa aatttaaatt ttattgaatg attttccagt acatagttta
1101 catatggttt gtctgttgca aaccgaacag ctctaatgac attattaagg
1151 gagatcacac ctaattgatc gagatacaac ataactaact gcctaaacct
1201 atgtaaatat gtcgtcccag aagctcgaac tgatgtcgtc cagacttgga
1251 agttcaggaa ggccttgtgt agacccagca tcctcctgag gttgtggttg
1301 aaccgtatct gtatgtggta caccctggtc gccgtgtacc gtagatcctc
1351 tacgttgtat atcttgaaat agaggggatt tgatatctcc cagatatata
1401 cgccattctc tgcctgaggt gcagtgatgc tctccccggt gcgtgaatcc
1451 atgccctgcg cagttaaggt gcacgaagac cgagcacccg cagtctaggt
1501 caattctgcg tcgcctggta gccctcttct tcgcaatcct gtgcttggtc
1551 ttgatagagg ggggcgtcga ggaagatgaa tttagcattt tttaatgtcc
1601 agcttctcag tgatgcgttt tcctccttct ggaggaaatc tttatagctg
1651 gccccctctc caggattgca gagcacgatt gatgggatac cgcctttaat
1701 ttgaacaggc tttccgtatt tgcaatttga ctgccagtcc ttttgagctc
1751 ccatcaattc tttccagtgc tttagcttta ggtagtgcgg agggacgtca
1801 tcaatgacgt tatattcagc ctcatttgaa tagaccctgg agttgaagtc
1851 caggtgtcca ctgagatagt tatgggcccc taaagcacga gcccacattg
1901 ttttgcctgt tcgactatca ccttcgacta tcaaactaac aggcctactg
1951 ggccgcgcag cggcatctct tccaaaatag tcatcggccc actcttgcat
2001 ctcgtcggga acgtgagtga atgaggagag tggaaacgga ggagaccaag
2051 gttccggagc ctttgcgaac atgcgatcta aattactatt tagattatgg
2101 aattggaaga gatacttttc cggcagcttt tctctgatga tggccagcgc
2151 cgcttctttt gacggcgcgt ttaaggcctc tgcggcagcg tcgttagctg
2201 tctggcaacc tcctctagca cttcttccgt cgacctggaa aactccccat
2251 tcgattgtat ctccgtcctt gtcgacatag gacttgacgt cggacgccga
2301 cttagccccc tgaatgttcg gatggaaatg tgctgacctg gttggggaga
2351 caaggtcgaa gagtctatta ttcgtgcact ggaatttccc ttcgaactgg
2401 aagaggacgt ggagatgagg ctccccatcg tcgtgaagct ctctgcaaat
2451 tttgataaat ttcctgttaa ctgggaaatt tagggctaat aattgggaaa
2501 gtgcctcttc tttggataga gagcacttcg gataagtgag gaaataattt
2551 ttggctttta tacagaaaga gcccttccgt ggcatttttg taaataaggc
2601 cgtgtacccc caattgctcc agctccaaaa ctcatatgaa ttgggggtac
2651 tgggggtgaa tatatagtaa gaagttccta agggtatatg tcccacgtgg
2701 cggccatccg ctataatatt