Sequence of DPV Sida yellow blotch virus
Sida yellow blotch virus isolate BR:Chp1:10 segment DNA-A, complete sequence.
ACC No: JX871382
Dated: 2013-02-04 | Length: 2664 | CRC: 1936274208
ID JX871382; SV 1; circular; genomic DNA; STD; VRL; 2664 BP.
XX
AC JX871382;
XX
DT 04-FEB-2013 (Rel. 115, Created)
DT 04-FEB-2013 (Rel. 115, Last updated, Version 1)
XX
DE Sida yellow blotch virus isolate BR:Chp1:10 segment DNA-A, complete
DE sequence.
XX
KW .
XX
OS Sida yellow blotch virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
XX
RN [1]
RP 1-2664
RA Tavares S.S., Ramos-Sobrinho R., Gonzales-Aguilera J., Lima G.S.A.,
RA Assuncao I.P., Zerbini F.M.;
RT "Further molecular characterization of weed-associated begomoviruses in
RT Brazil with an emphasis on Sida spp.";
RL Unpublished.
XX
RN [2]
RP 1-2664
RA Tavares S.S., Ramos-Sobrinho R., Gonzales-Aguilera J., Lima G.S.A.,
RA Assuncao I.P., Zerbini F.M.;
RT ;
RL Submitted (26-SEP-2012) to the INSDC.
RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n,
RL Vicosa, Minas Gerais 36570-000, Brazil
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CC ##Assembly-Data-START##
CC Assembly Method :: DNAman6.0 v. 6.0
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
XX
FH Key Location/Qualifiers
FH
FT source 1. .2664
FT /organism="Sida yellow blotch virus"
FT /segment="DNA-A"
FT /host="Sida urens"
FT /isolate="BR:Chp1:10"
FT /mol_type="genomic DNA"
FT /country="Brazil"
FT /collection_date="2010"
FT /db_xref="taxon:1266993"
FT CDS 245. .1000
FT /codon_start=1
FT /product="coat protein"
FT /note="CP"
FT /protein_id="AGD98612.1"
FT /translation="MPKRDAPWRLMAGTSKVSRSSNAAPRGGSGPKYNKANEWVNRPMY
FT RKPRIYRAFRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRF
FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV
FT KNDLRDRYQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENAL
FT LLYMACTHASNPVYATLKIRIYFYDSIMN"
FT CDS complement(997. .1395)
FT /codon_start=1
FT /product="replication-enhancer protein"
FT /note="REN"
FT /protein_id="AGD98613.1"
FT /translation="MDSRTGELITAHQAENGVYIWEITNPLYFRIYRVEDPPYTRTRVY
FT HVQIRFNHNLRRALGLHKAFLNFQVWTTSLTASGKTYLNRFSDLVMLYLDRLGVITLNN
FT VIRAVRYATNKSYVNHVLENHSIKFKFY"
FT CDS complement(1142. .1531)
FT /codon_start=1
FT /product="transactivating protein"
FT /note="TRAP"
FT /protein_id="AGD98614.1"
FT /translation="MLNSSSSTPPSIKPRHRIAKSRAPRRRRIDLDCGCSLYVHINCSK
FT YGFTHRGTHHCASGREWRLYLGDNKSPVFQDIQGRGSTVHEDQSVPRTDKVQPQPQESI
FT GSPQGIPELPSLDDFSDSFWEDLFE"
FT CDS complement(1452. .2528)
FT /codon_start=1
FT /product="replication-associated protein"
FT /note="REP"
FT /protein_id="AGD98615.1"
FT /translation="MPRKGSFCIKAKNYFLTYPRCSLTKEETLSQLLNLTTPVNKKFIK
FT ICRELHEDGEPHIHVLLQFEGKFQCTNNRFFDMVSPTRSTHFHPNIQGAKSASDVKSYV
FT EKDGDTMEWGEFQVDGRSARGGCQTANDAAAEALNAASKEAALQIIKEKLPEKYLFQFH
FT NLHSNLDRIFSKAPEPWAPPFHLSSFTNVPDEMQEWADDYFGRGAAARPERPISLIVEG
FT DSRTGKTMWARALGPHNYLSGHLDFNSRVYSDDAEYNVIDDVTPHYLKLKHWKELIGAQ
FT KEWQSNCKYGKPRKIKGGIPSIVLCNPGEGASYKEYLDKEENASLRAWTLHNAKFIFLD
FT SPLYQTTTQDCEEQSTST"
FT CDS complement(2114. .2371)
FT /codon_start=1
FT /product="AC4 protein"
FT /note="AC4"
FT /protein_id="AGD98616.1"
FT /translation="MGSLISTSSSSSKGNSNARIIDSSTWCPQQGQHISIRTFRELNQR
FT PTSSPTSRKTETPWNGENSRSTAEVLEEVAKRLTTLQQRP"
XX
SQ Sequence 2664 BP; 638 A; 610 C; 654 G; 761 T; 1 other;
jx871382 Length: 2664 04-FEB-2013 Type: N Check: 740 ..
1 accggatggc cgcgcgattt tccccccccc cccccacgtg gcgctctggt
51 ggccgcgcga tcccgttccc cttccccccc ccgcgcgcgt ctctctcctt
101 taatttgaat taaaggattt aactttcgtt ccgaccaatg ataatgcgtc
151 tgactagctt agataactgt gaaagacttg gtccctaagt tgttgattaa
201 cggctataaa ttaaaggaag accgggtagg gtcttcaatt caagatgcct
251 aagcgggatg ccccgtggcg cctgatggcg ggaacttcta aggttagccg
301 ttcctcgaat gccgctcctc gtggaggttc tgggcctaag tacaacaagg
351 ccaatgagtg ggtcaaccga cccatgtaca ggaagcccag gatataccgg
401 gccttcagaa ctccagatgt ccctcgaggg tgtgaagggc catgcaaggt
451 gcagtcctat gaacagcgac atgatatctc tcatgtcggt aaggtgatgt
501 gtatatctga cgtcacccga ggtaatggca ttactcaccg tgtcggtaag
551 cgtttctgtg ttaagtctgt gtacatttta ggtaagatat ggatggacga
601 gaacatcaag ctaaagaacc acacgaacag tgtcatgttc tggttggtca
651 gggaccgtag accgtatggt acaccaatgg actttggcca ggtgttcaac
701 atgttcgaca acgagcccag cactgctacg gttaagaacg atctccgtga
751 tcgttatcag gtgatgcaca agttctatgc caaagtcact ggtggtcagt
801 atgccagcaa tgaacaggct ctggtcaaga ggttctggaa ggtcaacaat
851 catgtggtgt ataatcacca ggaggctggg aagtacgaga atcacacgga
901 gaacgctctg ttactgtaca tggcatgcac tcatgcctct aaccctgtgt
951 atgcaacgct taagattcgg atctacttct acgattcgat catgaattaa
1001 taaaatttga attttattga atgattttct agtacatggt tgacgtatga
1051 cttgttcgtc gcataacgaa cagccctaat tacattatta agagtaataa
1101 ctcctaatcg gtctaagtac agcatgacta agtcactaaa cctattcaaa
1151 taagtcttcc cagaagctgt cagagaagtc gtccagactt ggaagttcag
1201 gaatgccttg tggagaccca atgctctcct gaggttgtgg ttgaacctta
1251 tctgtacgtg gtacactctg gtcctcgtgt acggtggatc ctctaccctg
1301 tatatcctga aatacagggg atttgttatc tcccagatat aaacgccatt
1351 ctctgcctga tgcgcagtga tgagttcccc ggtgcgtgaa tccatatttg
1401 ctgcagttga tgtggacgta caaggagcag ccgcagtcaa gatcgattcg
1451 tctacgtcga ggtgctctgc tcttcgcaat cctgtgtcgt ggtttgatag
1501 aggggggagt cgaggaagat gaatttagca ttgtggagtg tccaggctct
1551 caatgatgca ttttcctcct tgtcgagata ctctttataa ctggccccct
1601 ctccaggatt gcagagcacg attgatggga tacccccttt aatctttctt
1651 ggcttgccgt acttgcaatt tgactgccac tctttttgag caccaatcaa
1701 ttccttccag tgctttagct ttagataatg gggtgtgaca tcatcgatga
1751 cgttgtactc agcgtcgtct gagtagaccc gggaattgaa atccagatgg
1801 ccgcttaagt aattatgtgg gcctaatgca cgagcccaca tcgtcttgcc
1851 cgttctagag tcaccctcaa caattaaact tatgggcctc tctggccgcg
1901 cagcggcacc tctcccaaaa taatcatcgg cccactcttg catctcgtct
1951 ggcacgttag tgaaggagga gaggtgraac ggaggagccc acggttccgg
2001 agctttggaa aaaatcctgt ctaagttgga atgaagatta tggaactgaa
2051 ataagtattt ttcaggtagt ttttccttta ttatttgtag ggcagcttct
2101 tttgaagctg cgtttaaggc ctctgctgca gcgtcgttag ccgtttggca
2151 acctcctcta gcacttctgc cgtcgacctg gaattctccc cattccatgg
2201 tgtctccgtc tttctcgacg taggacttga cgtcggacgc tgatttagct
2251 ccctgaatgt tcggatggaa atgtgttgac cttgttgggg acaccatgtc
2301 gaagaatcta ttattcgtgc attggaattt cccttcgaac tggaggagga
2351 cgtggatatg aggctcccca tcttcgtgaa gctctctgca gattttgatg
2401 aatttcttgt taactggtgt tgttaggtta agcaattggg aaagtgtttc
2451 ttctttggtt aaagaacatc gaggatatgt gaggaaataa tttttggctt
2501 ttatacagaa agaacccttt cgtggcattt ttgtaaataa tgcagtgtac
2551 ccccaattgg tttctgctct aaaactgcta tgaattgggg gtactggggg
2601 ttcatttata ctataacttc ttaagggcct taaggggcaa cgtggcggcc
2651 atccgtataa tatt