Sequence of DPV Blainvillea yellow spot virus
Blainvillea yellow spot virus isolate BR:Rla6:09 segment DNA-A, complete sequence.
ACC No: JX871392
Dated: 2013-02-04 | Length: 2679 | CRC: -1277053657
ID JX871392; SV 1; circular; genomic DNA; STD; VRL; 2679 BP.
XX
AC JX871392;
XX
DT 04-FEB-2013 (Rel. 115, Created)
DT 04-FEB-2013 (Rel. 115, Last updated, Version 1)
XX
DE Blainvillea yellow spot virus isolate BR:Rla6:09 segment DNA-A, complete
DE sequence.
XX
KW .
XX
OS Blainvillea yellow spot virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
XX
RN [1]
RP 1-2679
RA Tavares S.S., Ramos-Sobrinho R., Gonzales-Aguilera J., Lima G.S.A.,
RA Assuncao I.P., Zerbini F.M.;
RT "Further molecular characterization of weed-associated begomoviruses in
RT Brazil with an emphasis on Sida spp.";
RL Unpublished.
XX
RN [2]
RP 1-2679
RA Tavares S.S., Ramos-Sobrinho R., Gonzales-Aguilera J., Lima G.S.A.,
RA Assuncao I.P., Zerbini F.M.;
RT ;
RL Submitted (26-SEP-2012) to the INSDC.
RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n,
RL Vicosa, Minas Gerais 36570-000, Brazil
XX
CC ##Assembly-Data-START##
CC Assembly Method :: DNAman6.0 v. 6.0
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
XX
FH Key Location/Qualifiers
FH
FT source 1. .2679
FT /organism="Blainvillea yellow spot virus"
FT /segment="DNA-A"
FT /host="Blainvillea rhomboidea"
FT /isolate="BR:Rla6:09"
FT /mol_type="genomic DNA"
FT /country="Brazil"
FT /collection_date="2009"
FT /db_xref="taxon:536081"
FT CDS 235. .990
FT /codon_start=1
FT /product="coat protein"
FT /note="CP"
FT /protein_id="AGD98662.1"
FT /translation="MPKRDAPWRHMTGTSKISRSVNFSPRSSVGPRSNKANDWVNRPMY
FT RKPKIYRMYRNPDVPRGCEGPCKVQSYEQRHDVSHVGKVMCVSDVTRGNGITHRVGKRF
FT CVKSVYIIGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV
FT KNDLRDRFQVMHKFYGKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENAL
FT LLYMACTHASNPVYATLKIRIYFYDSISN"
FT CDS complement(987. .1385)
FT /codon_start=1
FT /product="replication-enhancer protein"
FT /note="REN"
FT /protein_id="AGD98663.1"
FT /translation="MDSRTGELITAPQAENGVYIWETPNPLYFKIYQVEDIRYTTTRVY
FT HIQIRFNHNVRKALDLHKAYLNFQVWTTSLTASGTTYLNRFQYLVMLYLNRSGVISINN
FT VIRAVRFATDKAYIHHVLEQHSIKFKIY"
FT CDS complement(1132. .1527)
FT /codon_start=1
FT /product="transactivating protein"
FT /note="TRAP"
FT /protein_id="AGD98664.1"
FT /translation="MRNSSSSTPPCIKAQHRAAKQRQRAIRRRRIDLVCGCSIFLHINC
FT RGHGFTHRGTHHCTSGGEWRLYLGDTKSPLFQDIPSRGHPIHNNSSVSHPDTVQPQRAE
FT SVGSPQGVSELPSLDDFPDSFWDDVLK"
FT CDS complement(1448. .2524)
FT /codon_start=1
FT /product="replication-associated protein"
FT /note="REP"
FT /protein_id="AGD98665.1"
FT /translation="MSKPQRFRIQSKNYFLTYPKCSIPREEALEQILALDTPTNKKYIR
FT VCRELHENGEPHLHALLQFEGKFTCTNCRFFDLRHPRNSNVCHGKYESCRSSSDAKSYV
FT EKDGDYVEWGNFQIDARSARGGKQTANDSYAKALNTSSIEQALDIIKEEQPQHFFLQYH
FT NLVANAQRIFKSVPEPWVPPFPLSSFTNVPEEMQAWADDYFGRSAAARPERPISIIIEG
FT DSRTGKTMWARALGVHNYLSGHLDFNPKCYSNEAHYNIIDDVDPKYLKMKHWKELIGAQ
FT KDWQSNCKYGKPVQIKGGIPCIVLCNPGEGASYKRFLDREENSGLNNWTKHNAKFVFLN
FT TPLYQSTAPSSETTSTCD"
FT CDS complement(2110. .2367)
FT /codon_start=1
FT /product="AC4 protein"
FT /note="AC4"
FT /protein_id="AGD98666.1"
FT /translation="MGSLISMLCCNSKGSSRARIADSSIYDTQEIPMFVMESMNLVGHP
FT PTPNHMLRRTEITSNGVIFRSTQDLLEEVNRQLTIHTQRR"
XX
SQ Sequence 2679 BP; 677 A; 559 C; 619 G; 824 T; 0 other;
jx871392 Length: 2679 04-FEB-2013 Type: N Check: 2075 ..
1 acctgagggc cgcccccgcc tggagactcc gcttttgacg tggcgccctg
51 atgtccgttg gatggtatta ccttggagat tgggcctgtc tcttttgccc
101 cacttgcttt aattaaagtt gtctaggccc aatcattttg cgcttcccga
151 gcttatatat tattaaagac gtgggcgcca agttcgataa aggctataaa
201 tgatatggtg accagtcagt cactttaatt caaaatgcct aagcgcgatg
251 ccccatggcg ccatatgaca gggacgtcca aaattagccg gtccgttaat
301 ttctcacctc gttcaagtgt tgggccaaga tccaacaagg ccaatgattg
351 ggttaacagg cctatgtaca ggaagcccaa gatatatcgg atgtacagga
401 accccgatgt tccaaggggt tgtgaagggc cttgtaaagt ccagtcttat
451 gagcaacgtc atgatgtatc ccatgttggc aaagtgatgt gtgtgtcgga
501 cgtgacacgc ggcaatggta tcacccatcg tgttgggaaa cgtttctgtg
551 ttaagtctgt atatattata ggtaagatat ggatggacga gaatatcaag
601 ttgaagaacc ataccaacag tgttatgttt tggttggtac gagatcgtag
651 accctatgga acccctatgg actttggcca agtgtttaac atgtttgata
701 atgagcctag tacggctaca gtcaagaacg atctgcgtga ccgtttccaa
751 gttatgcaca agttttatgg caaagtcacc ggtggacagt atgctagtaa
801 tgaacaggcg cttgttaagc gcttttggaa ggtgaacaac catgtggtgt
851 acaaccatca agaagctggg aagtatgaga atcacactga gaatgcatta
901 ttattgtata tggcatgtac tcatgcctct aatcctgtgt atgctacgtt
951 gaagattcgg atttattttt acgattcgat atccaattaa taaattttga
1001 attttattga atgttgttca agtacatgat ggatatatgc tttgtctgtt
1051 gcaaagcgaa ctgctctaat tacattgtta atggaaatta cacctgaacg
1101 gttaagatac aacataacta aatactgaaa tctatttaag tacgtcgtcc
1151 cagaagctgt cagggaagtc gtccagactt ggaagttcag atacgccttg
1201 tggagatcca acgctttccg cacgttgtgg ttgaaccgta tctggatgtg
1251 atacactcga gttgttgtgt atcggatgtc ctctacttgg tatatcttga
1301 aataaagggg atttggtgtc tcccagatat agacgccatt ctccgcctga
1351 ggtgcagtga tgagttcccc tgtgcgtgaa tccatgtcct ctgcagttga
1401 tgtggagaaa tatggaacag ccacaaacta gatcaattcg tcttctccta
1451 atcgcacgtt gacgttgttt cgctgctcgg tgctgtgctt tgatacaggg
1501 gggtgttgag gaagacgaat ttcgcattgt gctttgtcca gttatttaat
1551 cctgaatttt cctctctgtc aaggaacctt ttatagctgg ccccctcgcc
1601 aggattgcaa agcacgatgc atgggatacc tcctttaatt tgaactggtt
1651 taccgtattt acaatttgac tgccagtcct tttgggcccc aattaactct
1701 ttccagtgtt tcatctttaa atatttgggg tccacgtcat caataatgtt
1751 gtagtgtgct tcgtttgaat agcacttagg gttaaagtct aggtgaccac
1801 ttaaataatt gtggacccct aaagcacgtg cccacatcgt cttccctgtt
1851 cgagaatcac cttcaattat tatactaatt ggtctctccg gccgcgcagc
1901 ggcacttctt ccgaagtaat cgtccgccca agcttgcatc tcttctggca
1951 cgttagtgaa tgatgacagt ggaaacggag gaacccatgg ttctggaact
2001 gatttaaata tacgttgagc atttgcaact aggttgtgat attggaggaa
2051 gaagtgttgt ggctgttcct ccttgattat atctagagcc tgttctatgg
2101 acgatgtgtt taacgccttt gcgtatgaat cgttagctgt ctgtttacct
2151 cctcgagcag atcttgcgtc gatctgaaaa ttaccccatt cgacgtaatc
2201 tccgtccttc tcaacatatg atttggcgtc ggaggatgac ctacaagatt
2251 catactttcc atgacaaaca ttggaatttc ttgggtgtcg tagatcgaag
2301 aatctgcaat tcgtgcacgt gaacttccct tcgaattgca gcaaagcatg
2351 gagatgaggc tccccatttt cgtgtaactc tctacataca cgaatatatt
2401 tcttgttcgt tggtgtatct aatgcgagaa tctgttcgag agcctcctct
2451 ctgggtatgg aacattttgg atatgtgagg aaataatttt tagactgtat
2501 tctaaaacgc tgaggtttgc tcatatttga acccagaaga gtgtctccgg
2551 atggtgtctc caactccccc ccttgaaact gggcttatag tattggagac
2601 tagagtcaat atatatgcta gaagatattt gggttagatt gtggtcccta
2651 cacccttgcg gccctcagta tataatatt