Sequence of DPV Rice yellow mottle virus

Rice yellow mottle virus isolate Mg47 coat protein (CP) gene, complete cds.

ACC No: JX961558

Dated: 2012-12-16 | Length: 720 | CRC: -2084555000

                
ID   JX961558; SV 1; linear; genomic RNA; STD; VRL; 720 BP.
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AC   JX961558;
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DT   16-DEC-2012 (Rel. 115, Created)
DT   16-DEC-2012 (Rel. 115, Last updated, Version 1)
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DE   Rice yellow mottle virus isolate Mg47 coat protein (CP) gene, complete cds.
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KW   .
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OS   Rice yellow mottle virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Sobemovirus.
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RN   [1]
RC   Publication Status: Available-Online prior to print
RP   1-720
RX   PUBMED; 23123216.
RA   Rakotomalala M., Pinel-Galzi A., Mpunami A., Randrianasolo A.,
RA   Ramavovololona P., Rabenantoandro Y., Fargette D.;
RT   "Rice yellow mottle virus in Madagascar and in the Zanzibar Archipelago;
RT   Island systems and evolutionary time scale to study virus emergence";
RL   Virus Res. 0:0-0(2012).
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RN   [2]
RP   1-720
RA   Rakotomalala M., Pinel-Galzi A., Mpunami A., Randrianasolo A.,
RA   Ramavovololona P., Rabenantoandro Y., Fargette D.;
RT   ;
RL   Submitted (11-OCT-2012) to the INSDC.
RL   RPB, IRD, 911 av Agropolis BP 64501, Monptellier 34080, France
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CC   ##Assembly-Data-START##
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
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FH   Key             Location/Qualifiers
FH
FT   source          1. .720
FT                   /organism="Rice yellow mottle virus"
FT                   /host="Oryza sativa"
FT                   /isolate="Mg47"
FT                   /mol_type="genomic RNA"
FT                   /country="Madagascar"
FT                   /collection_date="2003"
FT                   /db_xref="taxon:31744"
FT   gene            1. .720
FT                   /gene="CP"
FT   CDS             1. .720
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /protein_id="AFZ75341.1"
FT                   /translation="MGRKGKKINSNQGQQGKKKSRRPRGHSAEPQLQRAPVAQASRISG
FT                   TVPGPLSSNAWPVHSVEFLMDFKRSATSADAVAFNCVPFNLPRVWSLARCYSLWKPTRW
FT                   DVVYLPEVSAATAGSIEMCYLYDYADAIPSDTGKMSRTAGFVTSSVWYGAEGCHLLNGG
FT                   SARNAVVASMDCSRVGWRRVTSSIPSSVDPNVVNTILPARLAVRSSIKPTVDDVPGKLY
FT                   AIVSMVLRDPVDPTLNT"
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SQ   Sequence 720 BP; 157 A; 181 C; 218 G; 164 T; 0 other;

jx961558 Length: 720  16-DEC-2012  Type: N  Check: 355  ..

       1  atggggagga agggcaagaa aatcaactcc aaccaaggcc agcaaggcaa
      51  gaagaagagc cgacgtcctc gtgggcattc ggcggagccc cagcttcaac
     101  gggctccagt ggctcaggcg tcccggatat ctgggacggt tcctggacca
     151  ctatcttcta atgcctggcc ggtccactcc gtggaattcc taatggattt
     201  taagcggagt gccacatcgg cggatgcggt agcatttaat tgtgtgccgt
     251  ttaatctgcc tcgggtgtgg agtcttgcac gttgttactc gctgtggaag
     301  ccaacacggt gggatgtagt ttacctcccc gaggtgagcg cggcaacagc
     351  tggaagtatt gagatgtgtt atctctacga ctatgctgat gccatcccaa
     401  gtgacacggg caagatgagc aggacggcgg gcttcgtcac ctctagcgtt
     451  tggtacggcg cggagggctg ccatttgttg aatggcggtt cagcacggaa
     501  tgccgtggtc gcctcgatgg attgctctcg agtcggctgg agacgcgtaa
     551  ctagttcaat tcctagtagc gtggatccca acgtcgtaaa taccatactg
     601  ccagcaaggc tagctgtgcg gtcgtcaatt aaaccgacgg tcgatgatgt
     651  gccggggaaa ctctatgcca tcgtcagtat ggtcctgcgg gatccggttg
     701  atccaacact caatacgtga