Sequence of DPV Rice yellow mottle virus

Rice yellow mottle virus isolate Mg127 coat protein (CP) gene, complete cds.

ACC No: JX961589

Dated: 2012-12-16 | Length: 720 | CRC: -1758520620

                
ID   JX961589; SV 1; linear; genomic RNA; STD; VRL; 720 BP.
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AC   JX961589;
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DT   16-DEC-2012 (Rel. 115, Created)
DT   16-DEC-2012 (Rel. 115, Last updated, Version 1)
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DE   Rice yellow mottle virus isolate Mg127 coat protein (CP) gene, complete
DE   cds.
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KW   .
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OS   Rice yellow mottle virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Sobemovirus.
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RN   [1]
RC   Publication Status: Available-Online prior to print
RP   1-720
RX   PUBMED; 23123216.
RA   Rakotomalala M., Pinel-Galzi A., Mpunami A., Randrianasolo A.,
RA   Ramavovololona P., Rabenantoandro Y., Fargette D.;
RT   "Rice yellow mottle virus in Madagascar and in the Zanzibar Archipelago;
RT   Island systems and evolutionary time scale to study virus emergence";
RL   Virus Res. 0:0-0(2012).
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RN   [2]
RP   1-720
RA   Rakotomalala M., Pinel-Galzi A., Mpunami A., Randrianasolo A.,
RA   Ramavovololona P., Rabenantoandro Y., Fargette D.;
RT   ;
RL   Submitted (11-OCT-2012) to the INSDC.
RL   RPB, IRD, 911 av Agropolis BP 64501, Monptellier 34080, France
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CC   ##Assembly-Data-START##
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
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FH   Key             Location/Qualifiers
FH
FT   source          1. .720
FT                   /organism="Rice yellow mottle virus"
FT                   /host="Oryza sativa"
FT                   /isolate="Mg127"
FT                   /mol_type="genomic RNA"
FT                   /country="Madagascar"
FT                   /collection_date="2010"
FT                   /db_xref="taxon:31744"
FT   gene            1. .720
FT                   /gene="CP"
FT   CDS             1. .720
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /protein_id="AFZ75372.1"
FT                   /translation="MARKGKKINSNQGQQGKKESRRPRGRSAEPQLQRAPVAQASRISG
FT                   TVPGPLSSNTWPVHSVEFLMDFKRSATSADAVAFNCVPFNLPRVWSLARCYSLWKPTRW
FT                   DVVYLPEVSAATAGSIEMCYLYDYADAIPSDTGKMSRTAGFVTSSVWYGAEGCHLLNGG
FT                   SARNAVVASMDCSRVGWRRVTSSIPSSADPNVVNTILPARLAVRSSVKPTVDDVPGKLY
FT                   AIVSMVLRDPVDPTLNT"
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SQ   Sequence 720 BP; 152 A; 189 C; 221 G; 158 T; 0 other;

jx961589 Length: 720  16-DEC-2012  Type: N  Check: 7967  ..

       1  atggccagga agggcaagaa aatcaactcc aaccaaggcc agcaaggcaa
      51  gaaggagagc cgacgtcctc gcgggcgttc ggcggagccc cagcttcaac
     101  gggctccagt ggctcaggcg tcccggatat ctgggacggt tcctggacca
     151  ctatcttcta atacctggcc ggtccactcc gtggaattcc tgatggattt
     201  taagcggagt gccacatcgg cggatgcggt agcatttaat tgtgtgccgt
     251  tcaatctgcc tcgggtgtgg agtcttgcac gttgctactc gctgtggaag
     301  ccaacacggt gggatgtagt ttacctcccc gaggtgagcg cggcgacggc
     351  tggaagtatt gagatgtgtt atctctacga ctatgccgat gccatcccaa
     401  gtgacacggg caagatgagc aggacggcgg gcttcgtcac ctctagcgtt
     451  tggtacggcg cggagggctg ccatttgttg aatggcggtt cagcacggaa
     501  tgccgtggtc gcctcgatgg attgttctcg agtcggctgg agacgcgtaa
     551  ctagttcaat tcctagtagc gcggacccca acgtcgtaaa caccatactg
     601  ccagcaaggc tagctgtgcg gtcgtcagtt aaaccgacgg tcgatgatgt
     651  gccggggaaa ctctatgcca tcgtcagtat ggtcctgcgg gatccggttg
     701  atccaacact caatacgtga