Sequence of DPV Tomato yellow leaf curl virus
Tomato yellow leaf curl virus isolate Seongnam1-1, complete genome.
ACC No: JX961669
Dated: 2012-10-28 | Length: 2781 | CRC: 112209590
ID JX961669; SV 1; circular; genomic DNA; STD; VRL; 2781 BP.
XX
AC JX961669;
XX
DT 28-OCT-2012 (Rel. 114, Created)
DT 28-OCT-2012 (Rel. 114, Last updated, Version 1)
XX
DE Tomato yellow leaf curl virus isolate Seongnam1-1, complete genome.
XX
KW .
XX
OS Tomato yellow leaf curl virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2781
RA Kwak H.R., Lee Y.J., Kim M.K., Park J.A., Lee S.C., Choi H.S.;
RT "Tomato yellow leaf curl virus";
RL Unpublished.
XX
RN [2]
RP 1-2781
RA Kwak H.R., Lee Y.J., Kim M.K., Park J.A., Lee S.C., Choi H.S.;
RT ;
RL Submitted (11-OCT-2012) to the INSDC.
RL Crop Protection, National Academy of Agricultural Science, RDA, Suin-ro
RL 126th, Gwonseon-gu, Suwon, Gyeonggi-do 441-707, Republic of Korea
XX
FH Key Location/Qualifiers
FH
FT source 1. .2781
FT /organism="Tomato yellow leaf curl virus"
FT /host="tomato"
FT /isolate="Seongnam1-1"
FT /mol_type="genomic DNA"
FT /country="South Korea"
FT /collection_date="2012"
FT /db_xref="taxon:10832"
FT gene 148. .498
FT /gene="AV2"
FT CDS 148. .498
FT /codon_start=1
FT /gene="AV2"
FT /product="V2 protein"
FT /protein_id="AFV36743.1"
FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQAVEETYEPNTLGHDLIRDL
FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHI
FT PEAQNIQNVSKP"
FT gene 308. .1084
FT /gene="AV1"
FT CDS 308. .1084
FT /codon_start=1
FT /gene="AV1"
FT /product="V1 protein"
FT /note="coat protein"
FT /protein_id="AFV36744.1"
FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAVPIVQGTNKRRSW
FT TYRPIYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH
FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGNSPMDFGQVFNMFDN
FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFRINSHVTYNHQEAAKYE
FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN"
FT gene complement(1081. .1485)
FT /gene="AC3"
FT CDS complement(1081. .1485)
FT /codon_start=1
FT /gene="AC3"
FT /product="C3 protein"
FT /protein_id="AFV36745.1"
FT /translation="MDSRTGELITAPQAENGVFIWEINNPLYFKITEHSQRPFLMNHDI
FT ISIQIRFNHNIRKVLGIHKCFLNFRIWTTLQPQTGRFLRVFRYQILKYLDSLGVISINN
FT VIRAVDHVLYDVLENTINVTETHDIKYKFY"
FT gene complement(1226. .1633)
FT /gene="AC2"
FT CDS complement(1226. .1633)
FT /codon_start=1
FT /gene="AC2"
FT /product="C2 protein"
FT /protein_id="AFV36746.1"
FT /translation="MQPSSPSTSHCSQVSIKVQHKITKKKPIRRKRVDLDCGCSYYLHI
FT NCNNHGFTHRGTHHCSSSREWRFYLGDKQSPLFQDNRTQPEAISNEPRHHFHSDKIQPQ
FT HQEGIGDSQMFSQLPNLDDITASDWSFLKSI"
FT gene complement(1542. .2615)
FT /gene="AC1"
FT CDS complement(1542. .2615)
FT /codon_start=1
FT /gene="AC1"
FT /product="C1 protein"
FT /protein_id="AFV36747.1"
FT /translation="MPRLFKIYAKNYFLTYPNCSLSKEEALSQLTNLETPTNKKYIKVC
FT RELHENGEPHLHVLIQFEGKYQCKNQRFFDLVSPNRSAHFHPNIQAAKSSTDVKTYVEK
FT DGDFIDFGVFQIDGRSARGGQQSANDAYAEALNSGSKSEALNILKEKAPKDYILQFHNL
FT SSNLDRIFSPPLEVYVSPFLSSSFNQVPDELEEWVAENVVSSAARPWRPISIVIEGDSR
FT TGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQS
FT NTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNATFVTLYEPLFT
FT SINQGPTQDNQEETHKA"
FT gene complement(2171. .2464)
FT /gene="AC4"
FT CDS complement(2171. .2464)
FT /codon_start=1
FT /gene="AC4"
FT /product="C4 protein"
FT /protein_id="AFV36748.1"
FT /translation="MGNHISMCLSNSKANTNVRTNGSSTWYPQTGQHISIRTFRQLRAQ
FT QMSRPTWKKTETSLILEFSKSMADQLEEVSNLPTTHMPRHSIQAVNPRPSIY"
XX
SQ Sequence 2781 BP; 762 A; 528 C; 609 G; 882 T; 0 other;
jx961669 Length: 2781 28-OCT-2012 Type: N Check: 1207 ..
1 accggatggc cgcgccttgt atttttatgt ggtccccatg agggttccac
51 atacgtcact gtcaaccaat caaattgcat cctcaaacgt tagataagta
101 tttatttgtc tttatatact tggtccccaa gtaatttgtc ttgcactatg
151 tgggatccac ttctaaatga atttcctgaa tctgttcacg gatttcgttg
201 tatgttagct attaaatatt tgcaggccgt tgaggaaact tacgagccca
251 atacattggg ccacgattta attagggatc ttatatctgt tgtaagggcc
301 cgtgactatg tcgaagcgac caggcgatat aatcatttcc acgcccgtct
351 cgaaggttcg ccgaaggctg aacttcgaca gcccatacag cagccgtgct
401 gctgtcccca ttgtccaagg cacaaacaag cgacgatcat ggacgtacag
451 gcccatatac cggaagccca gaatatacag aatgtatcga agccctgatg
501 ttcctcgtgg atgtgaaggc ccatgtaaag tccagtctta tgagcaacgg
551 gatgatatta agcacactgg tattgttcgt tgtgttagtg atgttactcg
601 cggatctgga attacccaca gagtgggtaa gaggttctgt gttaaatcga
651 tatatttttt aggtaaagtc tggatggatg aaaatattaa gaagcagaat
701 cacactaatc aggtcatgtt cttcttggtt cgtgatagaa ggccctatgg
751 aaacagccca atggattttg gacaggtttt taatatgttc gataatgagc
801 ccagtaccgc aaccgtgaag aatgatttgc gggataggtt tcaagtgatg
851 aggaaatttc atgctacagt tattggtggg ccctctggaa tgaaggaaca
901 ggcattagtt aagagatttt ttagaattaa cagtcacgta acttataatc
951 atcaggaggc agccaagtat gagaaccata ctgaaaacgc cttgttattg
1001 tatatggcat gtacgcatgc ctctaatcca gtgtatgcaa ctatgaaaat
1051 acgcatctat ttctatgatt caatatcaaa ttaataaaat ttatatttta
1101 tatcatgagt ttctgttaca tttattgtgt tttcaagtac atcatacaat
1151 acatgatcaa ctgctctgat tacattatta attgaaatta caccaagact
1201 atctaaatac ttaagaattt gatatctaaa tactcttaag aaacgaccag
1251 tctgaggctg taatgtcgtc caaattcgga agttgagaaa acatttgtga
1301 atccccaata ccttcctgat gttgtggttg aatcttatct gaatggaaat
1351 gatgtcgtgg ttcattagaa atggcctctg gctgtgttct gttatcttga
1401 aatagagggg attgtttatc tcccagataa aaacgccatt ctctgcttga
1451 ggagcagtga tgagttcccc tgtgcgtgaa tccatgattg ttgcagttga
1501 tgtggaggta gtatgagcag ccacagtcta ggtctacacg cttacgcctt
1551 atgggtttct tcttggttat cttgtgttgg accttgattg atacttgtga
1601 acagtggctc gtagagggtg acgaaggttg cattcttgag agcccaattt
1651 ttcaaggata tgtttttttc ttcgtctaga tattccctat atgaggaggt
1701 aggtcctgga ttgcagagga agatagtggg aattccccct ttaatttgaa
1751 tgggcttccc gtactttgtg ttgctttgcc agtccctctg ggcccccatg
1801 aattccttga agtgctttaa ataatgcggg tctacgtcat caatgacgtt
1851 gtaccacgca tcattactgt acacctttgg gcttaggtct agatgtccac
1901 ataaataatt atgtgggcct agagacctgg cccacattgt tttacctgtt
1951 ctgctatcac cctcaatgac aatacttatg ggtctccatg gccgcgcagc
2001 ggaagatacg acgttctcgg cgacccactc ttcaagttca tctggaactt
2051 gattaaaaga agaagaaaga aatggagaaa cataaacttc taaaggagga
2101 ctaaaaatcc tatctaaatt tgaacttaaa ttatgaaatt gtaaaatata
2151 gtcctttggg gccttctctt ttaatatatt gagggcctcg gatttactgc
2201 ctgaattgag tgcctcggca tatgcgtcgt tggcagattg ctgacctcct
2251 ctagctgatc tgccatcgat ttggaaaact ccaaaatcaa tgaagtctcc
2301 gtctttttcc acgtaggtct tgacatctgt tgagctctta gctgcctgaa
2351 tgttcggatg gaaatgtgct gacctgtttg gggataccag gtcgaagaac
2401 cgttggttct tacattggta tttgccttcg aattggataa gcacatggag
2451 atgtggttcc ccattctcgt ggagttctct gcaaactttg atgtattttt
2501 tatttgttgg ggtttctagg tttgttaatt gggaaagggc ttcctcttta
2551 gagagagaac aattgggata tgttaggaaa taatttttgg catatatttt
2601 aaataaacga ggcatgttga aatgaattgg tgtccctcaa agctctatgg
2651 caatcggtgt atcggtgtct tacttatacc tggacaccta atggctattt
2701 ggtaattttg taaaagtaca attcaattca aaattcaaaa ttcaaaaatc
2751 aaatcattaa agcggccatc cgtataatat t