Sequence of DPV Rice yellow mottle virus
Rice yellow mottle virus isolate Mg20, complete genome.
ACC No: JX966246
Dated: 2012-12-16 | Length: 4448 | CRC: 184389167
ID JX966246; SV 1; linear; genomic RNA; STD; VRL; 4448 BP.
XX
AC JX966246;
XX
DT 16-DEC-2012 (Rel. 115, Created)
DT 16-DEC-2012 (Rel. 115, Last updated, Version 1)
XX
DE Rice yellow mottle virus isolate Mg20, complete genome.
XX
KW .
XX
OS Rice yellow mottle virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Sobemovirus.
XX
RN [1]
RC Publication Status: Available-Online prior to print
RP 1-4448
RX PUBMED; 23123216.
RA Rakotomalala M., Pinel-Galzi A., Mpunami A., Randrianasolo A.,
RA Ramavovololona P., Rabenantoandro Y., Fargette D.;
RT "Rice yellow mottle virus in Madagascar and in the Zanzibar Archipelago;
RT Island systems and evolutionary time scale to study virus emergence";
RL Virus Res. 0:0-0(2012).
XX
RN [2]
RP 1-4448
RA Rakotomalala M., Pinel-Galzi A., Mpunami A., Randrianasolo A.,
RA Ramavovololona P., Rabenantoandro Y., Fargette D.;
RT ;
RL Submitted (12-OCT-2012) to the INSDC.
RL RPB, IRD, 911 av Agropolis BP 64501, Monptellier 34080, France
XX
CC ##Assembly-Data-START##
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
XX
FH Key Location/Qualifiers
FH
FT source 1. .4448
FT /organism="Rice yellow mottle virus"
FT /host="Oryza sativa"
FT /isolate="Mg20"
FT /mol_type="genomic RNA"
FT /country="Madagascar"
FT /collection_date="2004"
FT /db_xref="taxon:31744"
FT gene 82. .555
FT /gene="ORF1"
FT CDS 82. .555
FT /codon_start=1
FT /gene="ORF1"
FT /product="putative movement and gene silencing protein"
FT /protein_id="AFZ75394.1"
FT /translation="MTRLEVLIRPTLQTVEKAIAAGYTHTLTWIWHSQIWDVNGVSDPT
FT LAADFNPERVGWVSVSFACTRCTAHYYTCEQVKFFTNIPSVHYDVVCADCERSVQQDDV
FT IDREHDGRNAEISACNARALSEGRPASLVYLSRDACDIPEHAGSCRFDKYLNF"
FT gene 608. .3606
FT /gene="ORF2b"
FT CDS join(608. .2092,2092. .3606)
FT /codon_start=1
FT /ribosomal_slippage
FT /gene="ORF2b"
FT /product="polyprotein"
FT /note="ORF2b produced by a -1 frameshift in ORF2a;
FT translation occurs as an ORF2a-ORF2b fusion protein;
FT contains RNA-dependent RNA polymerase"
FT /protein_id="AFZ75396.1"
FT /translation="MGSSVVGRFLTRTKETTRVDSNLLIVLAGLIAAAIVSERLPVTAS
FT LWAIPSAIIANWIVLSAHESFSRFVEGVEIEPMSTLRYGKVQSAPRFDPSRGYVVDVSY
FT NGHVIPVILDFTTTTALSVPQRVNPGVSMEASRGGLPPTSVKLEDVPPSVVVLYHDSVR
FT LGLGTRVRTPTGRDLLMTNHHIAALEPNGIAYKGHLKKVALDAPVIACDHPHIDCAFYE
FT VPPKIWSLLGVKSASLKPLVKQTAVSLFGGSSSTDFSSCVGIAQIGDNPFLIRHQSTTC
FT SGWSGSPLYHKGCVVGLHIGAADGYNVASNVAWYFHTFKRDVVVESPFEIYGKFREANS
FT EEYDESLRHGVEYAEYDFSGDTIRASSNTWVRERERYHAEERRKSGQLSWADRFGDDSG
FT EDVDIETSHPVAPSISKTRRKRSKRVEQFVDAASECSFSFESAHEGIVPETSAYDHVPL
FT NCQGAGSSLRASPPLDGLFNSENTAGTPSVTPSLPTEMPFSYVGKSGVIFGEHAGKSVC
FT AAVKDAISVFPDLEGFGWPERGSKAELDSLILQAGRFNRTVCPPGLAQAVQSLQEKYPK
FT VPPRRCLRDEWRFDDIFDEVERILCETGEVNSASSPGVPLTGLANSNGEVRRLARDLVC
FT LAVVERLNALASVDPRQHNWTPRELVEKGLCDPVRLFVKNEPHPQKKLRERRFRLISSV
FT SLVDQLVERMLFGPQNNTEISTWWQWPSKPGMGLLTPEQIRLVWDDVFQKHQAHPAAEA
FT DISGFDWSVQDWELWSDLAIRINRGNFQGNLRKAAISRYYCFMNSVFQLSDGTLIQQEL
FT PGLMKSGSYCTSSTNSRIRCLMAELIGSPWCIAMGDDSVEGWIEGAQSKYAALGHTCKE
FT YYPCKTKGRELLEFNFCSHLIRRGHAELTSWPKALFRFLSSKHEDFEDLWVELHTCGVW
FT SRIERYLRGIGRVSHKDGQEGQENQLQPRPARQEEEPTSSWAFGGAPASTGSSGSGVPD
FT IWDGSWTTIF"
FT gene 608. .2425
FT /gene="ORF2a"
FT CDS 608. .2425
FT /codon_start=1
FT /gene="ORF2a"
FT /product="protease and VPg"
FT /protein_id="AFZ75395.1"
FT /translation="MGSSVVGRFLTRTKETTRVDSNLLIVLAGLIAAAIVSERLPVTAS
FT LWAIPSAIIANWIVLSAHESFSRFVEGVEIEPMSTLRYGKVQSAPRFDPSRGYVVDVSY
FT NGHVIPVILDFTTTTALSVPQRVNPGVSMEASRGGLPPTSVKLEDVPPSVVVLYHDSVR
FT LGLGTRVRTPTGRDLLMTNHHIAALEPNGIAYKGHLKKVALDAPVIACDHPHIDCAFYE
FT VPPKIWSLLGVKSASLKPLVKQTAVSLFGGSSSTDFSSCVGIAQIGDNPFLIRHQSTTC
FT SGWSGSPLYHKGCVVGLHIGAADGYNVASNVAWYFHTFKRDVVVESPFEIYGKFREANS
FT EEYDESLRHGVEYAEYDFSGDTIRASSNTWVRERERYHAEERRKSGQLSWADRFGDDSG
FT EDVDIETSHPVAPSISKTRRKRSKRVEQFVDAASECSFSFESAHEGIVPETSAYDHVPL
FT NCQGAGSSLRASPPLDGLFNSENTAGTPSVTPSLPTECPSATLENRVSSLENMLGKVSA
FT QLSKTQSQYSQILKDLAGLRGEVKQSLTPSSSKPAGSTERYVPPGSRKQSNHSKKSTQK
FT SPPGDASGTSGGSTTSSMKSKESSAKPAK"
FT gene 3446. .4165
FT /gene="ORF4"
FT CDS 3446. .4165
FT /codon_start=1
FT /gene="ORF4"
FT /product="coat protein"
FT /protein_id="AFZ75397.1"
FT /translation="MARKGKKINSNQGQQGKKKSRRPRGRSAEPQLQRAPVAQASRISG
FT TVPGPLSSNAWPVHSVEFLMDFKRSATSADAVAFNCVPFNLPRVWSLARCYSLWKPTRW
FT DVVYLPEVSAATAGSIEMCYLYDYADAIPSDTGKMSRTAGFVTSSVWYGAEGCHLLNGG
FT SARNAVVASMDCSRVGWRRVTSSIPSSVDPNVVNTILPARLAVRSSIKPTVDDVPGKLY
FT AIVSMVLRDPVDPTLNT"
XX
SQ Sequence 4448 BP; 962 A; 1139 C; 1288 G; 1059 T; 0 other;
jx966246 Length: 4448 16-DEC-2012 Type: N Check: 9500 ..
1 acaattgaag ctaggaaagg agcatattgc gaaagcgatc cctccttccg
51 acgaacaatt gtacccacgt ctgctacgtg tatgacacgg ttggaagttc
101 ttatacgacc gactttgcag actgtggaaa aggccattgc cgcgggctat
151 acgcacacgc tcacctggat ttggcattct cagatctggg acgttaacgg
201 tgtgagtgat cccactcttg ccgctgactt caaccccgag agggttggtt
251 gggtgtctgt gtcatttgcc tgtactcggt gcactgctca ctactatacg
301 tgtgagcagg tgaaattctt caccaacatc ccgtcggttc attacgacgt
351 ggtgtgtgct gattgtgagc gcagtgttca gcaggacgac gtgatcgacc
401 gcgaacacga cgggcgtaac gcagagattt ctgcctgcaa cgctcgggct
451 ttgagtgagg gtcgtccagc cagtctggtt tacctctctc gggacgcttg
501 cgatatcccc gagcacgccg gaagctgccg gtttgataag tacctcaact
551 tttgagggaa cactctgccg acatccaagg agcggtcgtg gttcagacta
601 acacgggatg ggctcttctg ttgttggtcg ctttctcact cgcaccaagg
651 aaacgacgag ggtggactcc aacctcctca tcgtcttggc tgggttgata
701 gcggccgcga tagtctcaga gcgcctgccc gtgacggcgt cattgtgggc
751 aatcccctca gctattatag caaactggat cgtgctgtca gctcacgaga
801 gcttcagccg gttcgttgag ggggttgaga ttgagcctat gtccacgctt
851 cggtatggga aggttcagtc tgctccccgg tttgatccct cccggggtta
901 tgtggtcgat gtttcgtaca acggccacgt gattccggtg atattggact
951 tcaccacgac tacggctctg tcggttcccc aaagagtaaa ccctggggtc
1001 tcgatggagg ctagtcgtgg ggggctccca ccgacgtccg tcaaactcga
1051 agatgtgccg ccgagcgttg tggttttgta ccacgactct gtcaggctag
1101 gccttggaac tagggtgcga actcccacgg gtcgtgattt gctcatgacc
1151 aatcaccata tcgctgctct agagcccaat ggcatcgcgt acaagggtca
1201 ccttaagaaa gtggctctag acgcgccagt catcgcatgt gaccatccac
1251 acatagactg tgcgttttac gaggtgcctc ccaagatctg gtctctcttg
1301 ggggtcaagt ctgccagttt gaaacctttg gttaaacaga ctgcggtgtc
1351 actcttcgga ggctcgtcat ccactgactt ctcgagttgt gttgggatag
1401 cccagattgg ggataatcca ttcctgataa ggcatcaaag cacaacttgc
1451 agtggctggt cgggctcccc gctctaccac aaaggttgcg tggttggctt
1501 acatataggt gctgcggatg gttataatgt ggcatctaat gtagcctggt
1551 acttccatac cttcaaaagg gatgttgttg ttgagtctcc gttcgagatt
1601 tacggcaaat tccgggaagc aaactctgag gagtatgacg aaagtctgcg
1651 ccatggggtg gaatatgcgg agtacgattt ctctggtgac acaatccggg
1701 cgtcttccaa cacctgggtg cgtgagagag agagatacca cgctgaggaa
1751 cgtcgtaagt ccggccagct tagctgggca gatcgttttg gtgacgacag
1801 tggcgaggat gttgatatcg agacatcgca tcccgtagca ccgtcaatat
1851 ctaaaacgcg gcggaaacgg tcaaagcgcg ttgagcagtt cgtcgacgcg
1901 gcttctgagt gctccttctc gttcgagtca gctcacgagg ggattgtgcc
1951 agagacctca gcttatgacc acgttccttt aaactgccag ggggcgggct
2001 cgagccttcg ggcgagtccg cccttggacg gcttattcaa ctcggagaat
2051 accgctggga ctccctcggt gactccctcc cttccgacgg aatgcccttc
2101 agctacgttg gaaaatcggg tgtcatcttt ggagaacatg ctgggaaaag
2151 tgtctgcgca gctgtcaaag acgcaatctc agtattccca gatcttgaag
2201 gatttggctg gcctgagagg ggaagtaaag cagagcttga ctccctcatc
2251 ctccaagccg gccggttcaa cagaacggta tgtccccccg ggctcgcgca
2301 agcagtccaa tcactccaag aaaagtaccc aaaagtcccc cccaggcgat
2351 gcctcaggga cgagtggagg ttcgacgaca tcttcgatga agtcgaaaga
2401 atcctctgcg aaaccggcga agtgaattcc gcttcctcgc cgggggtgcc
2451 gctgacgggc cttgccaatt ccaatggtga ggtgcggagg cttgcgagag
2501 atttggtatg tttagctgtg gtggagcgat tgaatgcctt agcctcggtt
2551 gacccccgcc agcataactg gacacccagg gagctggtag agaaaggtct
2601 ttgtgaccct gtgcgtttgt tcgtcaagaa cgagccacac ccacagaaga
2651 aattgcgtga acgcagattc aggctgattt cttctgtttc tctagttgac
2701 cagctggtgg agcggatgct tttcgggcca cagaacaaca ctgagatttc
2751 aacttggtgg cagtggcctt cgaagccggg catgggtctg ttgacccctg
2801 aacaaatccg tttggtgtgg gacgacgtgt tccagaagca ccaagcccac
2851 cctgcggctg aggcagacat atcggggttt gattggtccg ttcaggactg
2901 ggagttgtgg tcagacctcg cgatccgtat aaacagaggg aattttcagg
2951 gaaacctcag gaaagcggct atcagccgtt actactgttt tatgaactct
3001 gttttccagc tctcagatgg aaccctcatc cagcaggagt tacccgggct
3051 tatgaagtcc ggctcttact gcacctcatc caccaattca cgcatacgct
3101 gcctaatggc tgagctaatc ggctcgccct ggtgcatagc tatgggtgat
3151 gattcggtgg aaggatggat tgagggtgcc cagtccaagt acgccgcgtt
3201 gggtcacacc tgcaaggagt actacccatg taagaccaag gggcgtgagc
3251 tcctggaatt caacttctgt tcacacttga tcaggagggg tcatgctgag
3301 ctcacttcat ggccgaaggc gcttttccgc tttctgtcga gcaagcatga
3351 ggactttgaa gatctgtggg ttgagcttca cacgtgcggg gtgtggagca
3401 ggatcgaacg atatctgcgt gggatagggc gagtctccca caaagatggc
3451 caggaagggc aagaaaatca actccaacca aggccagcaa ggcaagaaga
3501 agagccgacg tcctcgtggg cgttcggcgg agccccagct tcaacgggct
3551 ccagtggctc aggcgtcccg gatatctggg acggttcctg gaccactatc
3601 ttctaatgcc tggccggtcc actccgtgga attcctgatg gattttaagc
3651 ggagtgccac atcggcggat gcggtagcat ttaattgtgt accgttcaat
3701 ctgcctcggg tgtggagtct tgcacgttgt tactcgctgt ggaagccaac
3751 acggtgggat gtagtttacc tccccgaggt gagcgcggcg acagctggaa
3801 gtattgagat gtgttatctc tacgactatg ctgatgctat cccaagtgac
3851 acgggcaaga tgagcaggac ggcgggcttc gtcacctcta gcgtttggta
3901 cggcgcggag ggctgccatt tgttgaatgg tggttcagca cggaatgccg
3951 tggtcgcctc gatggattgt tctcgagtcg gctggagacg cgtaactagt
4001 tcaattccta gtagcgtgga tcccaacgtc gtaaatacca tactgccagc
4051 aaggctagct gtgcggtcgt ctatcaaacc gacggtcgat gatgtgccgg
4101 ggaaactcta tgccatcgtc agtatggtcc tgcgggatcc ggttgatcca
4151 acactcaata cgtgaaccgg attcaatgga gataggtatt ggcaccagtg
4201 atgatccacg gattagctca gagatcgact accctgaaaa ggatgttgag
4251 cgtttgcgaa cgcgggctga gtcctacgag atgatactgg cgcctatccc
4301 atgtggggaa tcgcacccac gtttcaaccc aaagcgatcc acacgctgga
4351 tagcgtttac ctggttggtt tcggagctgc caggaggacc tcttcacact
4401 ccgaattcca cattctttcc gagagaattc tcgggatggg tgggggag