Sequence of DPV Pichinde virus
Pichinde arenavirus small (S) RNA, complete.
ACC No: K02734
Dated: 1990-04-26 | Length: 3419 | CRC: -1058899536
!!NA_SEQUENCE 1.0
ID ARSRNA standard; RNA; VRL; 3419 BP.
XX
AC K02734;
XX
SV K02734.1
XX
DT 28-JAN-1986 (Rel. 08, Created)
DT 26-APR-1990 (Rel. 23, Last updated, Version 1)
XX
DE Pichinde arenavirus small (S) RNA, complete.
XX
KW glycoprotein; protein N.
XX
OS Pichinde virus
OC Viruses; ssRNA negative-strand viruses; Arenaviridae; Arenavirus;
OC 2-Tacaribe complex.
XX
RN [1]
RP 1-3419
RX MEDLINE; 85033957.
RA Auperin D.D., Romanowski V., Galinski M., Bishop D.H.L.;
RT "Sequencing studies of Pichinde arenavirus S RNA indicate a novel coding
RT strategy, an ambisense viral S RNA";
RL J. Virol. 52:897-904(1984).
XX
DR SWISS-PROT; P03540; VGLY_PIARV.
DR SWISS-PROT; P03541; NCAP_PIARV.
XX
CC The N protein is translated from a viral complementary mRNA coded
CC for by the 3' end of the S RNA. A second gene product, GPC, is
CC translated from a virus-sense mRNA, coded for by the 5' end of the
CC S RNA, and does not overlap the sequence coding for the N protein.
CC No other open reading frame large enough to code for GPC was
CC identified and AA analysis supports the idea that the annotated
CC open reading frame codes for GPC [1]. There is a unique RNA
CC sequence between the coding regions for the N-protein and GPC that
CC can be arranged in a hairpin configuration and may function as a
CC transcription terminator for both genes.
XX
FH Key Location/Qualifiers
FH
FT source 1. .3419
FT /db_xref="taxon:11630"
FT /organism="Pichinde virus"
FT CDS 52. .1563
FT /db_xref="SWISS-PROT:P03540"
FT /note="GPC precursor protein (putative)"
FT /protein_id="AAA46824.1"
FT /translation="MGQIVTLIQSIPEVLQEVFNVALIIVSVLCIVKGFVNLMRCGLFQ
FT LVTFLILSGRSCDSMMIDRRHNLTHVEFNLTRMFDNLPQSCSKNNTHHYYKGPSNTTWG
FT IELTLTNTSIANETSGNFSNIGSLGYGNISNCDRTREAGHTLKWLLNELHFNVLHVTRH
FT IGARCKTVEGAGVLIQYNLTVGDRGGEVGRHLIASLAQIIGDPKIAWVGKCFNNCSGDT
FT CRLTNCEGGTHYNFLIIQNTTWENHCTYTPMATIRMALQRTAYSSVSRKLLGFFTWDLS
FT DSSGQHVPGGYCLEQWAIIWAGIKCFDNTVMAKCNKDHNEEFCDTMRLFDFNQNAIKTL
FT QLNVENSLNLFKKTINGLISDSLVIRNSLKQLAKIPYCNYTKFWYINDTITGRHSLPQC
FT WLVHNGSYLNETHFKNDWLWESQNLYNEMLMKEYEERQGKTPLALTDICFWSLVFYTIT
FT VFLHIVGIPTHRHIIGDGCPKPHRITRNSLCSCGYYKYQRNLTNG"
FT CDS complement(1651. .3336)
FT /db_xref="SWISS-PROT:P03541"
FT /note="N protein"
FT /protein_id="AAA46825.1"
FT /translation="MSDNIPSFRWVQSLRRGLSNWTHPVKADVLSDTRALLSALDFHKV
FT AQVQRMVRKDKRTDSDLTKLRDMNKEVDALMNMRSVQRDNVLKVGGLAKEELMELASDL
FT DKLRKKVTRTEGLSQPGVYEGNLTNTQLEQRAEILRSMGFANARPAGNRDGVVKVWDIK
FT DNTLLINQFGSMPALTIACMTEQGGEQLNDVVQALSALGLLYTVKFPNMTDLEKLTQQH
FT SALKIISHEPSALNISGYNLSLSAAVKAAACMIDGGNMLETIQVKPSMFSTLIKSLLQI
FT KNREGMFVSTTPGQRNPYENLLYKICLSGDGWPYIGSRSQVQGRAWDNTTVDLDSKPSA
FT IQPPVRNGGSPDLKQIPKEKEDTVVSSIQMLDPRATTWIDIEGTPNDPVEMAIYQPDTG
FT NYIHCYRFPHDEKSFKEQSKYSHGLLLKDLADAQPGLISSIIRHLPQNMVFTAQGSDDI
FT IRLFEMHGRRDLKVLDVKLSAEQARTFEDEIWERYNQLCTKHKGLVIKKKKKGAVQTTA
FT NPHCALLDTIMFDATVTGWVRDQKPMRCLPIDTLYRNNTDLINL"
XX
SQ Sequence 3419 BP; 916 A; 772 C; 761 G; 970 T; 0 other;
K02734 Length: 3419 September 18, 2002 10:52 Type: N Check: 4135 ..
1 cgcaccgggg atcctaggca taccttggac gcgcatattt cttgatcaaa
51 gatgggacaa attgtgactt tgatccagtc cattcctgaa gtcctgcaag
101 aggtcttcaa tgttgctctg atcattgtct cagttctatg cattgtcaaa
151 ggatttgtca atctgatgag atgtggcctt ttccagctcg tcaccttcct
201 cattttgtct ggcagaagtt gtgacagcat gatgattgat agaaggcaca
251 atctcaccca tgttgaattc aatctcacac gaatgtttga caatctgcct
301 caatcatgca gcaagaacaa cacacaccat tactataaag gaccatccaa
351 cacgacatgg ggaattgaac tgaccttgac aaacacatct attgctaatg
401 aaactagtgg gaacttctcc aacatcggga gccttggata tggcaatatt
451 agcaattgtg acaggacaag ggaagcagga catacattga aatggttact
501 caatgaacta cacttcaatg tgctccatgt gactcgtcat ataggtgcca
551 gatgtaagac agttgaaggt gctggggtgt taatccaata caacttgaca
601 gttggggaca gaggaggtga ggttggcaga catcttattg catcactcgc
651 tcaaatcatc ggggatccta aaatcgcatg ggttgggaag tgcttcaaca
701 actgcagtgg agatacttgc agactgacaa actgtgaggg tggaacacat
751 tacaatttct taatcataca gaacaccaca tgggaaaatc attgcacata
801 cacaccaatg gcaacaataa gaatggctct tcaaagaact gcttatagtt
851 ctgttagcag gaaacttctt ggcttcttca cttgggactt gagtgattcc
901 tctgggcaac atgtcccagg tggctactgt ctagagcagt gggccattat
951 ctgggctgga ataaaatgtt tcgacaacac tgtaatggca aaatgcaaca
1001 aagatcacaa cgaggaattt tgcgacacaa tgaggttatt tgatttcaat
1051 caaaatgcca tcaaaacctt gcaactcaat gttgagaatt cactgaatct
1101 tttcaaaaag accatcaacg gactcatttc tgactcactt gtgattagaa
1151 acagtctcaa acaacttgct aaaattcctt actgcaacta cacaaaattt
1201 tggtacatca atgacactat cacaggaagg cattctttac cgcagtgttg
1251 gctggttcac aatggctcgt acctcaatga aacgcatttc aagaatgatt
1301 ggttgtggga gagccaaaat ctatacaatg agatgctgat gaaagagtat
1351 gaggaaagac aaggaaaaac ccctttggca ctgacagata tatgcttctg
1401 gtctttggtt ttttacacca ttacagtatt tctccacata gttggaatac
1451 ctactcatag gcacatcatt ggtgatggtt gcccgaaacc acacaggatt
1501 acaagaaact ccctgtgtag ctgcgggtat tataaatacc aaagaaacct
1551 tacaaatggg taaggttggg aaaataagct ccgcttccga catgggcctc
1601 gacggcactc cccaataggg gagtgacgtc gaggcctccg aggattaagc
1651 tcagaggttg atcaagtctg tgttgttcct gtacagtgtg tcaataggta
1701 aacatctcat gggtttctga tctctgaccc agcctgtcac tgttgcatca
1751 aacatgatgg tgtcaagcaa tgcacagtgg gggtttgcag tggtttgtac
1801 agctcctttc ttcttcttct ttatgactaa gcccttgtgc ttggtgcaga
1851 gttggttgta tctctcccag atctcatcct caaaggtgcg tgcctgctct
1901 gcactgagct tcacgtcaag tacttttaga tctcttcttc catgcatttc
1951 gaacagtctg attatatcat ctgaaccttg agcagtgaaa accatgttct
2001 ggggcaaatg tctgatgatt gaggagatca gacccggttg agcatcagcc
2051 aagtccttta aaaggagacc atgtgaatac ttgctctgct ctttgaagga
2101 tttttcatca tggggaaacc tataacagtg tatgtagttg cctgtatcag
2151 gttggtagat ggccatttcc accgggtcat ttggtgtccc ctcaatatca
2201 atccacgtag tggctcttgg atcaagcatc tgaattgagg acacaacagt
2251 gtcttctttt tccttaggga tttgtttgag atctggtgat ccaccgtttc
2301 ttactggtgg ctggatagca cttggctttg agtccaaatc cacagtggtg
2351 ttgtcccaag ccctcccttg aacttgggat cttgagccaa tgtagggcca
2401 gccatcccct gagagacaga ttttatacag caggttttca taagggttcc
2451 tttgcccggg tgtagtactc acaaacatac cctcacggtt cttaatctgc
2501 agtagacttt ttatgagggt gctaaacata gagggcttca cttggatggt
2551 ctcaagcatg ttgccaccat caatcataca agcagctgct ttgactgctg
2601 cagacagact aaggttatac ccagagatat tcaaggctga tggctcatgg
2651 ctgatgattt ttagggcgct gtgttgttgt gtgagctttt ccagatctgt
2701 catgttcggg aacttgacag tgtaaagcaa accaagtgca ctcagtgctt
2751 ggacaacatc attaagctgc tcaccccctt gctctgtcat acaggcgatg
2801 gtcaaggctg gcattgatcc aaattgatta atcaatagtg tgttatcctt
2851 gatgtcccag accttcacaa caccatctct gttacctgcg ggtctggcat
2901 tagcaaaccc catcgagcgg agaatctctg ccctttgctc cagctgagtg
2951 tttgtaagat tgccttcata gacaccaggc tgagacaggc cttcggttct
3001 ggtgactttc ttccttaact tgtccaaatc agatgcaagc tccatgagct
3051 cctctttagc taagcctccc actttaagta cattatctct ttggactgat
3101 ctcatattca tcagagcatc aacctctttg ttcatgtccc tcagcttggt
3151 cagatcagaa tcagtcctct tatctttgcg caccattctt tggacttgag
3201 caactttgtg aaagtcaaga gcagacaaca gtgctcttgt gtctgacagc
3251 acatcagcct tcacaggatg ggtccagttg gacaagcccc tcctaaggga
3301 ttgcacccag cggaacgatg ggatattgtc ggacattttg gagttgttca
3351 cacttcctct gagtcagtaa agaagtgaac gtacagcgtg atctagtgtc
3401 gcctaggatc cactgtgcg