Sequence of DPV Peanut stunt virus satellite RNA

Peanut stunt virus-associated RNA5 (PARNA 5).

ACC No: K03110

Dated: 2000-03-04 | Length: 393 | CRC: -1375121951

                !!NA_SEQUENCE 1.0
ID   CUPSVRN5   standard; RNA; VRL; 393 BP.
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AC   K03110;
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SV   K03110.1
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DT   02-JUL-1986 (Rel. 09, Created)
DT   04-MAR-2000 (Rel. 63, Last updated, Version 2)
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DE   Peanut stunt virus-associated RNA5 (PARNA 5).
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KW   satellite RNA.
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OS   Peanut stunt virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Bromoviridae;
OC   Cucumovirus.
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RN   [1]
RP   1-393
RX   MEDLINE; 85216451.
RA   Collmer C.W., Hadidi A., Kaper J.M.;
RT   "Nucleotide sequence of the satellite of peanut stunt virus reveals
RT   structural homologies with viroids and certain nuclear and mitochondrial
RT   introns";
RL   Proc. Natl. Acad. Sci. U.S.A. 82:3110-3114(1985).
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CC   Draft entry and clean copy sequence for [1] kindly provided by
CC   C.W.Collmer, 15-SEP-1986 1985.
CC   Three potential reading frames are found in PARNA5 at positions
CC   41-140, 48-140 and 144 to the end of the molecule. Smaller
CC   potential reading frames are located at positions 68-136 and
CC   76-147.  The translational capability of PARNA5 was not
CC   investigated.  PARNA5 differs from other viroids in that it has a
CC   5' cap and a 3' hydroxyl group and gives no hint of circular
CC   precursors or products.  The presence within PARNA5 of conserved
CC   intron sequences, at positions 78-82, 86-92, 194-200, 217-221,
CC   224-228 and 308-312, essential to proper RNA processing suggests a
CC   possible origin from plant introns and/or involvement of such
CC   sequences in the processing of PARNA5 multimers to monomers at some
CC   stage of replication.
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FH   Key             Location/Qualifiers
FH
FT   source          1. .393
FT                   /db_xref="taxon:12313"
FT                   /organism="Peanut stunt virus"
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SQ   Sequence 393 BP; 84 A; 100 C; 132 G; 77 T; 0 other;

 K03110  Length: 393  December 21, 2001 15:45  Type: N  Check: 8706  ..

       1  gttttgtttt gtcgggagtc accgcgtaaa aacccactgt aatggtgatg
      51  cgacagcagg tgaagaaatg cctgtatgtg cgtggcgcta cgcctttgcc
     101  cggggggata tactgggggg gggcgtatgc acgtaggtga ccgatgagag
     151  aggacgcctc cgggggcgga ggtaagtcgg ggagggcggc gttcgtagtg
     201  aaacgacctc ctatcaggac tgctgcaccg tcggggggaa acccccttgg
     251  gtcgagcccg atccctcttc ttgtaaaacc ggtggaactt aacctcattt
     301  ctggagaagt ccggacaact gtgatggaag aaagcagtgt ggtgccccag
     351  cggcgaccac gaaaggccac ggccttcagc tcctacacga ccc