Sequence of DPV Macroptilium yellow spot virus
Macroptilium yellow spot virus isolate BR:Oaf17:11 segment DNA-A, complete sequence.
ACC No: KC004105
Dated: 2013-01-23 | Length: 2650 | CRC: 1962972745
ID KC004105; SV 1; circular; genomic DNA; STD; VRL; 2650 BP.
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AC KC004105;
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DT 21-NOV-2012 (Rel. 114, Created)
DT 23-JAN-2013 (Rel. 115, Last updated, Version 2)
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DE Macroptilium yellow spot virus isolate BR:Oaf17:11 segment DNA-A, complete
DE sequence.
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KW .
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OS Macroptilium yellow spot virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RP 1-2650
RX PUBMED; 23136367.
RA Lima A.T., Sobrinho R.R., Gonzalez-Aguilera J., Rocha C.S., Silva S.J.,
RA Xavier C.A., Silva F.N., Duffy S., Zerbini F.M.;
RT "Synonymous site variation due to recombination explains higher genetic
RT variability in begomovirus populations infecting non-cultivated hosts";
RL J. Gen. Virol. 94(PT 2):418-431(2013).
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RN [2]
RP 1-2650
RA Lima A.T., Sobrinho R.R., Aguilera J.G., Rocha C.S., Silva S.J.,
RA Xavier C.A., Silva F.N., Duffy S., Zerbini F.M.;
RT ;
RL Submitted (24-OCT-2012) to the INSDC.
RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n,
RL Vicosa, Minas Gerais 36570-000, Brazil
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CC ##Assembly-Data-START##
CC Assembly Method :: DNAMAN v. 4.0
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .2650
FT /organism="Macroptilium yellow spot virus"
FT /segment="DNA-A"
FT /host="Macroptilium lathyroides"
FT /isolate="BR:Oaf17:11"
FT /mol_type="genomic DNA"
FT /country="Brazil"
FT /collection_date="2011"
FT /clone="RC183"
FT /db_xref="taxon:1129034"
FT CDS 223. .978
FT /codon_start=1
FT /product="CP"
FT /note="coat protein"
FT /protein_id="AFX60654.1"
FT /translation="MVKRDAPWRHMAGTSKVSRNNNYSPRGGGGPKNNRASEWVNRPMY
FT RKPRIYRMYRTPDVPRGCEGPCKVQSFEQRHDISHVGKVICMSDVTRGNGITHRVGKRF
FT CVKSVYILGKVWMDENIKLKNHTNSVMFWLVRDRRPYSSPMDFGQVFNMFDNEPSTATV
FT KNDLRDRFQVMHRFYAKVTGGQYASNEQAIVRRFWKVNNHVVYNHQEAGKYENHTENAL
FT LLYMACTHASNPVYATLKIRIYFYDSILN"
FT CDS complement(975. .1373)
FT /codon_start=1
FT /product="REN"
FT /note="replication-enhancer protein"
FT /protein_id="AFX60655.1"
FT /translation="MDSRTGELITAHQAESGVYIWEISNPLYFKINNVEDPLHTMTRIY
FT HVQIRFNHNLRKALALHKAYLNFQVWTISLRASGTTYLVRFKYLVMLYLDRIGVISLNN
FT VIRAVRFATDKSYVNYVLENHEIKFKFY"
FT CDS complement(1120. .1509)
FT /codon_start=1
FT /product="TRAP"
FT /note="transactivating protein"
FT /protein_id="AFX60657.1"
FT /translation="MRNSSSSTPPSIKVQHRAAKKRAIRRRRIDIDCGCSIYVHINCRG
FT HGFTHRGTHHCTSGREWRLYLGDIKSPLFQDQQRRGSTSHNDQNIPRPDQVQPQPEESI
FT GSPQGISQFPSLDNIPESFWDDIFS"
FT CDS complement(1460. .2506)
FT /codon_start=1
FT /product="REP"
FT /note="replication-associated protein"
FT /protein_id="AFX60656.1"
FT /translation="MPLQKSFRINAKNYFLTYPQCSLTKEEALSQLLNLSVPTNKKFIK
FT IARELHENGQPHLHVLIQFEGKFQCKNNRFFDLVSPTRSTHFHPNIQGAKSSSDVKSYV
FT EKDGDTIDWGEFQVDGRSARGGCQTINDTYAKALNASSAEEALQIIKEEQPQHFFLQHH
FT NLVANASRIFQKAPEPWVPPFHLSSFTNVPEEMQAWADDYFGRGAAARPERPISIIIEG
FT DSRTGKTMWARALGSHNYLSGHLDFNSKVYSNDVQYNVIDDIAPQYLKLKHWKELIGAQ
FT KDWQSNCKYGKPVQIKGGIPCIVLCNPGEGASYKSFLDKEENASLRQWTIHNAKFVFLN
FT SPLYQGST"
FT CDS complement(2092. .2355)
FT /codon_start=1
FT /product="AC4"
FT /protein_id="AFX60658.1"
FT /translation="MKMGSLISTSSSSSKGNSSARITDSSTWYPQPGQHISIRTFRELN
FT QAPTSSPTSRRTETQSIGGNFRSTEEVLEEVARRLTTHMPRR"
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SQ Sequence 2650 BP; 679 A; 541 C; 613 G; 817 T; 0 other;
kc004105 Length: 2650 23-JAN-2013 Type: N Check: 4917 ..
1 accggatggc cgcgcgattt tttatgggcc ttttcttttg ggctcgttct
51 tttggaccga gtgtatttga attaaagtca ttgttatttg aattaaagtc
101 agttatttta tttggtccaa tgaatatgcg tctgactagc ttagataatg
151 acaacttggt ccccaagttg gtggctaacg ggtatatatg ttaagaataa
201 ctgactactt ctttaattca gaatggttaa gcgggacgcc ccatggcgcc
251 acatggcagg aacctcaaag gtttcccgca ataacaacta ttctcctcgt
301 ggaggtggag gtccaaaaaa caacagggcc tctgaatggg ttaataggcc
351 catgtacaga aagcccagga tatatcggat gtacagaacc cccgatgtgc
401 ctagggggtg tgaaggccca tgtaaggttc agtcatttga acagcgtcat
451 gatatatccc atgttggtaa ggtcatatgt atgtctgacg tgacaagagg
501 taatggtatt acccatcgtg taggaaaacg tttttgtgtt aagtctgtat
551 atattctagg taaggtatgg atggacgaga acatcaagtt gaagaatcac
601 acgaacagtg tgatgttttg gttggtcaga gaccggagac cctatagctc
651 ccctatggac tttggccaag tgttcaacat gtttgataat gagcccagta
701 ctgctacggt taagaacgat cttcgtgatc gttttcaagt tatgcatcga
751 ttctatgcca aagtcactgg tggacagtat gcgagcaacg agcaagcaat
801 tgtgaggcgt ttttggaagg tcaacaatca tgttgtctac aaccaccaag
851 aagcagggaa atacgagaat catacggaga acgccttact attgtatatg
901 gcatgtactc atgcctctaa ccccgtgtat gcaaccttaa aaattcggat
951 ctatttttat gattcgatac tcaattaata aaatttgaat tttatttcat
1001 gattctccag tacataattt acatatgatt tgtctgttgc aaatcgaaca
1051 gctctgatta cattgttaag cgaaataaca cctattcggt ctaagtacaa
1101 catcactaag tatttaaatc taactaaata tgtcgtccca gaagctctca
1151 gggatattgt ccagacttgg aaattgagat atgccttgtg gagagccaat
1201 gctttcctca ggttgtggtt gaacctgatc tggacgtggt atattctggt
1251 cattgtgtga agtggatcct ctacgttgtt gatcttgaaa taaaggggat
1301 ttgatatctc ccagatatag acgccactct ctgcctgatg tgcagtgatg
1351 agttcccctg tgcgtgaatc catgtcctct gcagttgata tggacgtata
1401 tggagcaccc gcaatctatg tcaattcgtc ttcgcctgat tgctctcttc
1451 ttggccgctc tatgttgaac cttgatagag gggggagttg aggaagacga
1501 atttcgcatt gtgtattgtc cactgtctaa gtgatgcgtt ttcctctttg
1551 tcgaggaatg atttatagct ggcaccctcg ccaggattgc aaagcacaat
1601 gcatgggatt ccacctttaa tttgaactgg cttcccgtat ttgcaatttg
1651 attgccagtc cttttgagca cctatcaatt ctttccagtg ctttaacttt
1701 agatattgcg gtgcgatgtc atctatcacg ttatactgca catcatttga
1751 atagaccttt gaattgaaat cgaggtgacc actcaagtaa ttatgggacc
1801 ccaatgcacg tgcccacatg gtcttgcccg ttcgagagtc accctcgatg
1851 attatactaa ttggtctctc cggccgcgca gcggcacctc tcccaaaata
1901 gtcatctgcc caagcttgca tctcctctgg gacgttagtg aacgaggaga
1951 ggtgaaacgg aggaacccac ggttctggag ccttctggaa aatgcgagaa
2001 gcatttgcca ccaagttatg atgttggaga aagaagtgct gtggttgctc
2051 ctctttaatt atttgcagtg cttcttctgc agaagaagcg tttaacgcct
2101 tggcatatgt gtcgttaatc gtctggcaac ctcctctagc acttcttccg
2151 tcgacctgaa attcccccca atcgattgtg tctccgtcct tctcgacgta
2201 ggacttgacg tcggagcttg atttagctcc ctgaatgttc ggatggaaat
2251 gtgttgacct ggttggggat accaggtcga agaatctgtt attcttgcac
2301 tggaatttcc cttcgaactg gatgaggacg tggagatgag gctgcccatt
2351 ttcatgaagc tctctggcta ttttgatgaa tttcttatta gtgggaactg
2401 ataggtttaa taattgggac agtgcttcct cttttgtaag agagcactgt
2451 ggataagtaa ggaaataatt tttggcattt attctaaaag acttttggag
2501 tggcatattt tgtaaataag gcttggacac cgatcggggt ctctcaactt
2551 ctgtgatatg caattggtgt ctggtgtctt atttatacta gaaccctcaa
2601 tagaactttg gatctcaatc acccacgtgg cggccatccg atataatatt