Sequence of DPV Macroptilium yellow spot virus
Macroptilium yellow spot virus isolate BR:Crb4:11 segment DNA-A, complete sequence.
ACC No: KC004124
Dated: 2013-01-23 | Length: 2649 | CRC: -1580576029
ID KC004124; SV 1; circular; genomic DNA; STD; VRL; 2649 BP.
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AC KC004124;
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DT 21-NOV-2012 (Rel. 114, Created)
DT 23-JAN-2013 (Rel. 115, Last updated, Version 2)
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DE Macroptilium yellow spot virus isolate BR:Crb4:11 segment DNA-A, complete
DE sequence.
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KW .
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OS Macroptilium yellow spot virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RP 1-2649
RX PUBMED; 23136367.
RA Lima A.T., Sobrinho R.R., Gonzalez-Aguilera J., Rocha C.S., Silva S.J.,
RA Xavier C.A., Silva F.N., Duffy S., Zerbini F.M.;
RT "Synonymous site variation due to recombination explains higher genetic
RT variability in begomovirus populations infecting non-cultivated hosts";
RL J. Gen. Virol. 94(PT 2):418-431(2013).
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RN [2]
RP 1-2649
RA Lima A.T., Sobrinho R.R., Aguilera J.G., Rocha C.S., Silva S.J.,
RA Xavier C.A., Silva F.N., Duffy S., Zerbini F.M.;
RT ;
RL Submitted (24-OCT-2012) to the INSDC.
RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n,
RL Vicosa, Minas Gerais 36570-000, Brazil
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CC ##Assembly-Data-START##
CC Assembly Method :: DNAMAN v. 4.0
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .2649
FT /organism="Macroptilium yellow spot virus"
FT /segment="DNA-A"
FT /host="Phaseolus vulgaris"
FT /isolate="BR:Crb4:11"
FT /mol_type="genomic DNA"
FT /country="Brazil"
FT /collection_date="2011"
FT /clone="RC82"
FT /db_xref="taxon:1129034"
FT CDS 222. .977
FT /codon_start=1
FT /product="CP"
FT /note="coat protein"
FT /protein_id="AFX60749.1"
FT /translation="MVKRDAPWRHMAGTSKVSRNNNYSPRGGGGPKNNRASEWVNRPMY
FT RKPRIYRMYRTPDVPRGCEGPCKVQSFEQRHDISHVGKVICMSDVTRGNGITHRVGKRF
FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYSSPMDFGQVFNMFDNEPSTATV
FT KNDLRDRFQVMHRFYAKVTGGQYASNEQAIVRRFWKVNNHVVYNHQEAGKYENHTENAL
FT LLYMACTHASNPVYATLKIRIYFYDSILN"
FT CDS complement(974. .1372)
FT /codon_start=1
FT /product="REN"
FT /note="replication-enhancer protein"
FT /protein_id="AFX60750.1"
FT /translation="MDSRTGEPITAHQAESGVYIWEISNPLYFKINNVEDPLHTMTRIY
FT HVQIRFNHNLRKALALHKAYLNFQVWTISLRASGTTYLVRFKYLVMLYLDRIGVISLNN
FT VIRGVRFATDKSYVNYVLENHEIKFKFY"
FT CDS complement(1119. .1508)
FT /codon_start=1
FT /product="TRAP"
FT /note="transactivating protein"
FT /protein_id="AFX60752.1"
FT /translation="MRNSSSLTPPSIKVQHRAAKKRAIRRRRIDIDCGCSIYVHINCRG
FT HGFTHRGTHHCTSGREWRLYLGDIKSPLFQDQQRRGSTSHNDQNIPRPDQVQPQPEESI
FT GSPQGISQFPSLDNIPESFWDDIFS"
FT CDS complement(1459. .2505)
FT /codon_start=1
FT /product="REP"
FT /note="replication-associated protein"
FT /protein_id="AFX60751.1"
FT /translation="MPLQKSFRINAKNYFLTYPQCSLTKEEALSQLLNLSVPTNKKFIK
FT IARELHENGQPHLHVLIQFEGKFQCKNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYV
FT EKDGDTIDWGEFQIDGRSARGGCQTINDTYAKALNASSAEEALQIIKEEQPQHFFLQHH
FT NLVANASRIFQNAPEPWVPPFHLSSFTNVPEEMQAWADDYFGRGAAARPERPISIIIEG
FT DSRTGKTMWARALGSHNYLSGHLDFNSRVYSNDVQYNIIDDIAPQYLKLKHWKELIGAQ
FT KDWQSNCKYGKPVQIKGGIPCIVLCNPGEGASYKSFLDKEENASLRQWTIHNAKFVFLN
FT SPLYQGST"
FT CDS complement(2091. .2354)
FT /codon_start=1
FT /product="AC4"
FT /protein_id="AFX60753.1"
FT /translation="MKMGSLISTSSSSSKGNSSAKITDSSTWYPQPGQHISIRTFRELN
FT QAPTSSPTSRRTETPSIGGNFRSTEEVLEEVARRLTTHMPRR"
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SQ Sequence 2649 BP; 681 A; 543 C; 613 G; 812 T; 0 other;
kc004124 Length: 2649 23-JAN-2013 Type: N Check: 8787 ..
1 accggatggc cgcgcgattt tttatgggcc ttttcttttg ggctcgttct
51 tttggaccga gtgtatttga attaaagtcg ttgtatttga attaaagtca
101 gttattttag ttggtccaat gaatatgcgt ctgactagct tagatatgca
151 caacttggtc cccaagttgg tggctaacgg ttatatatgt taagaataac
201 tgactacttc tttaattcag aatggttaag cgggacgccc catggcgcca
251 catggcagga acctcaaagg tttcccgcaa taacaactat tcccctcgtg
301 gaggtggagg tccaaaaaac aacagggcct ctgaatgggt taataggccc
351 atgtacagaa agcccaggat ctatcgtatg tacagaaccc ccgatgtgcc
401 tagggggtgt gaaggcccat gtaaggttca atcgtttgaa cagcgtcacg
451 atatatccca tgttggtaag gttatatgta tgtctgacgt gacaagaggt
501 aatggtatta cccatcgtgt aggaaaacgt ttttgtgtta agtctgtata
551 tattctaggt aagatatgga tggacgagaa catcaagttg aagaatcaca
601 cgaacagtgt gatgttttgg ttggtcagag accggagacc ctatagctcc
651 cctatggact ttggtcaagt gttcaacatg tttgacaatg agcccagtac
701 tgctacggtt aagaacgatc ttcgtgatcg ttttcaagtt atgcatcgat
751 tctacgccaa agtcactggt ggacagtatg cgagcaacga gcaagcaatt
801 gtgaggcgtt tttggaaggt caacaatcat gttgtctaca accaccaaga
851 agcagggaaa tacgagaatc atacggagaa cgcactacta ctgtatatgg
901 catgtactca tgcctctaac cccgtgtatg caaccttaaa aattcggatc
951 tatttttacg attcgatact caattaataa aatttgaatt ttatttcatg
1001 attctccagt acataattta catatgattt gtctgttgca aatcgaacac
1051 ctctgattac attgttaagc gaaataacac ctattcgatc taagtacaac
1101 atgactaagt atttaaatct aactaaatat gtcgtcccag aagctctcag
1151 ggatattgtc cagacttgga aattgagata tgccttgtgg agagccaatg
1201 ctttcctcag gttgtggttg aacctgatct ggacgtggta tattctggtc
1251 attgtgtgaa gtggatcctc tacgttgttg atcttgaaat aaaggggatt
1301 tgatatctcc cagatataga cgccactctc tgcctgatgt gcagtgatgg
1351 gttcccctgt gcgtgaatcc atgtcctctg cagttgatat ggacgtatat
1401 ggagcacccg caatctatgt caattcgtct tcgcctgatt gctctcttct
1451 tggccgctct atgttgaacc ttgatagagg ggggagttaa ggaagacgaa
1501 tttcgcattg tgtatcgtcc actgtctaag tgatgcgttt tcctctttgt
1551 cgaggaatga tttatagctg gcgccctcgc caggattgca aagcacaatg
1601 catgggatac cacctttaat ttgaactggc ttgccatatt tgcaatttga
1651 ttgccagtcc ttttgagcac ctatcaattc tttccagtgc tttaacttta
1701 gatattgcgg tgcgatgtca tcaatgatgt tatactgtac atcatttgaa
1751 tagacccttg aattgaaatc gaggtgacca ctcaagtaat tatgggaccc
1801 caatgcacgt gcccacatgg tcttgcccgt tcgagagtca ccctcgatga
1851 ttatactaat tggtctctcc ggccgcgcag cggcacctct cccaaaatag
1901 tcatctgccc aagcttgcat ctcctctggg acgttagtga acgaggagag
1951 gtgaaacgga ggaacccacg gttctggagc attctggaaa atgcgagaag
2001 catttgccac caagttatga tgttggagaa agaagtgctg tggttgctct
2051 tctttaatta tttgcagtgc ttcttctgca gaagaagcgt ttaacgcctt
2101 ggcatatgtg tcgttaatcg tctggcaacc tcctctagca cttcttccgt
2151 cgatctgaaa ttccccccaa tcgatggtgt ctccgtcctt ctcgacgtag
2201 gacttgacgt cggagcttga tttagctccc tgaatgttcg gatggaaatg
2251 tgctgacctg gttggggata ccaggtcgaa gaatctgtta tttttgcact
2301 ggaatttccc ttcgaactgg atgaggacgt ggagatgagg ctgcccattt
2351 tcatgaagct ctctggctat tttgatgaat ttcttattag tgggaactga
2401 taggtttaat aattgggaca gtgcttcctc ttttgtaaga gagcactgtg
2451 gataagtaag gaaataattt ttggcattta ttctaaaaga cttttggagt
2501 ggcatatttt gtaaataagg cttggacacc gatcggggtc tctcaacttc
2551 tctgttatgc aattggtgtc tggtgtctta tttatactag aaccctcaat
2601 agaactttgg atctcaatca cccacgtggc ggccatccga tataatatt