Sequence of DPV Cucumber mosaic virus
Cucumber mosaic virus segment RNA1, complete sequence.
ACC No: KC019299
Dated: 2012-12-12 | Length: 3363 | CRC: 90242973
ID KC019299; SV 1; linear; genomic RNA; STD; VRL; 3363 BP.
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AC KC019299;
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DT 12-DEC-2012 (Rel. 115, Created)
DT 12-DEC-2012 (Rel. 115, Last updated, Version 1)
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DE Cucumber mosaic virus segment RNA1, complete sequence.
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KW .
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OS Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Bromoviridae;
OC Cucumovirus.
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RN [1]
RP 1-3363
RA Jin D.W.;
RT ;
RL Submitted (29-OCT-2012) to the INSDC.
RL Huazhong Agricultural University, Huazhong Agricultural University,
RL Zhengzhou Fengyang Street, Zhengzhou, Henan 430001, China
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CC GenBank Accession Numbers KC019299-KC019301 represent the complete
CC genome of Cucumber mosaic virus HB24.
CC ##Assembly-Data-START##
CC Assembly Method :: DNAStar v. 6.1.3
CC Assembly Name :: RNA1
CC Coverage :: completely
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .3363
FT /organism="Cucumber mosaic virus"
FT /segment="RNA1"
FT /strain="HB24"
FT /mol_type="genomic RNA"
FT /country="China"
FT /collection_date="2011"
FT /PCR_primers="fwd_name: rna12f1, fwd_seq:
FT gtttatttacaagagcgtacggttcaa, fwd_name: rna1-1600f, fwd_seq:
FT gagaagaatgggacgtgatatcatc, rev_name: rna1-1830r, rev_seq:
FT catgtgatgggggaacgtgt, rev_name: rna1-2r, rev_seq:
FT tggtctccttttggaggcccc"
FT /db_xref="taxon:12305"
FT CDS 94. .3075
FT /codon_start=1
FT /product="1a protein"
FT /protein_id="AFZ38411.1"
FT /translation="MATSSFNINELVASHGDKGLLANALVDKTAHEQLEEQLQHQRRGR
FT KVYIRNVLSVKDSEVIRNRYGGKYDLHLTQQEFAPHGLAGALRLCETLDCLDSFPSSGL
FT RQDLVLDFGGSWVTHYLRGHNVHCCSPCLGIRDKMRHAERLMNMRKIILNDPQQFDGRQ
FT PDFCTHPAADCKVQAHFAISIHGGYDMGFRGLCEAMNAHGTTILKGTMMFDGAMMFDDQ
FT GVIPELNCQWRKIRNAFSEDEDVTPLSGKINSTVFTRVRKFKTLVAFDFVNESTMSYVH
FT DWENIKSFLTDQTYSYKGMTYGIERCVINAGIMTYKIIGVPGMCPPELIRHCIWFPSIK
FT DYVGLKIPASQDLVEWKTVRVLTSTLRETEEIAMRCYNDKKAWMEQFKVILGVLSAKSS
FT TIVINGMSMQSGERIDINDYHYIGFAILLHTKMKYEQLGKMYDMWNASSISKWFAALTR
FT PLRVFFSSVVHALFPTLRPREEKEFLIKLSTFVTFNEECSFDGGEEWDVISSAAFVATQ
FT AVTDGKILAAQKAEKLAEKLAQPVIEVSDSPEASSPTLDDTADVCGREQEVSELDSLSA
FT QTRSPITRIAERATAMLEYAAYEKQLHDTTVSNLKRIWNMAGGDDKRNSLEGNLKFVFD
FT TYFTVDPMVNIHFSTGRWMRPVPEGIVYSVGYNERGLGPKADGELYIVNSECVICNSES
FT LSAVTRSLQAPTGTISQVDGVAGCGKTTAIKSIFEPSTDMIVTANKKSAHDVRMALFKS
FT SDSKEACTFVRTADSVLLNDCPTVSRVLVDEVVLLHFGQLCAVMSKLKAVRAICFGDSE
FT QIAFSSRDASFDMRFSKIIPDETSDADTTFRSPQDVVPLVRLMATKALPKGTHSKYMKW
FT VSQSKVKRSVTSRAIASVTLVDLDSSRFYITMTQADKASLISRAKEMNLPKTFWDERIK
FT TVHESQGISEDHVTLVRLKSTKCDLFKKFSYCLVALTRHKVTFRYEYCGVLNGDLIAEC
FT IARA"
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SQ Sequence 3363 BP; 837 A; 732 C; 824 G; 970 T; 0 other;
kc019299 Length: 3363 12-DEC-2012 Type: N Check: 1840 ..
1 gtttatttac aagagcgtac ggttcaatcc ctgccttcct tgttaactac
51 cctttgaaac ctctcttttc taatcttttc tttgtaaatt cctatggcga
101 cgtcctcgtt caacatcaat gaattggtag cctcccacgg cgataaagga
151 ctactcgcga acgccctcgt tgataagaca gctcatgagc agctcgagga
201 gcaattacag catcaacgta gaggccgtaa ggtctacatt cggaacgttc
251 tgagtgtaaa ggattccgag gtcatccgga atcggtatgg aggaaagtac
301 gacctccatc ttacccagca ggagtttgct ccccacggcc tagctggtgc
351 cctccgcttg tgtgaaactc tcgattgtct agactctttc ccttcatcag
401 gtctgcggca ggacctcgtc ttagacttcg gaggaagttg ggtcacacat
451 tacctccgcg gacataacgt acactgttgt tcgccctgct tgggtatccg
501 cgataaaatg cgccacgcgg aacgtttaat gaacatgcgc aagatcatct
551 tgaacgatcc acaacagttc gatggtcgac agccggattt ctgcactcat
601 cctgctgctg attgcaaagt acaagcccac tttgctatat ctattcatgg
651 aggttacgat atgggcttta gaggattatg tgaggcaatg aatgcacacg
701 gaaccactat tttgaaggga acgatgatgt tcgatggtgc gatgatgttt
751 gacgaccagg gcgtaatacc cgagcttaat tgtcagtgga ggaagattag
801 gaatgctttc tccgaagatg aagacgtcac acctttgtct ggtaaaatta
851 attccacagt attcacccgc gtgcgtaaat tcaagacttt ggtagctttt
901 gactttgtca atgagtctac tatgtcttat gttcatgatt gggagaatat
951 aaaatcgttt ctgacggacc agacgtactc gtataaaggg atgacctatg
1001 gcatcgaacg ttgtgtcatt aatgcgggta tcatgacgta caagattatc
1051 ggtgtgcctg ggatgtgtcc acccgaactc attcgacatt gtatttggtt
1101 cccctctatt aaggactatg ttggtcttaa gattcccgcg tcgcaggact
1151 tggttgagtg gaaaacagta cgcgttttaa cgtcaacatt acgtgagact
1201 gaagagattg ctatgaggtg ttataatgat aagaaagcgt ggatggagca
1251 gtttaaggtc atcttaggtg ttctttccgc taagtcatct accattgtta
1301 ttaatggtat gtccatgcaa tctggcgaac ggatagatat taatgattat
1351 cattatatag gattcgccat tcttcttcac acaaaaatga agtacgaaca
1401 gttagggaag atgtatgata tgtggaatgc ttcgagtatc tcgaagtggt
1451 tcgcagcgtt aactcgtccg ctgcgtgtgt tcttctctag cgttgttcac
1501 gcgctgttcc cgactttgag accccgcgag gagaaagaat tcctgattaa
1551 gctctccacc tttgtgactt ttaacgaaga gtgctcgttt gatggtggag
1601 aggaatggga cgtgatatca tctgctgctt tcgttgctac gcaggctgtt
1651 accgatggga agattttggc cgcacagaag gctgagaagc tcgctgagaa
1701 gcttgcacaa cccgtgattg aggtatcgga cagtcctgaa gcgtcatctc
1751 caacgcttga tgatactgct gatgtttgtg gaagggagca agaagtttcg
1801 gaacttgatt ctttatcagc tcagacacgt tcccccatca ctagaattgc
1851 tgaaagggct actgctatgt tagagtatgc cgcttatgag aaacagctac
1901 acgacaccac agtgtctaat ttgaaacgaa tctggaacat ggcgggtggt
1951 gatgacaaga gaaattccct cgagggtaat ttgaagtttg ttttcgacac
2001 gtattttacc gttgatccca tggtgaatat tcatttctcc acgggtcggt
2051 ggatgcgtcc tgtacctgag ggaattgttt actctgttgg ttataatgaa
2101 cgcggtttag gtccgaaggc tgatggagag ctttacattg tcaatagtga
2151 gtgtgtgatt tgcaatagtg agtctttatc tgctgtcact cgctcacttc
2201 aagccccaac cggaactatt agtcaagtcg acggagttgc tggctgtggg
2251 aagaccacgg caataaaatc catttttgag ccgtccacag acatgatcgt
2301 taccgcgaat aagaaatccg cccacgatgt tcgtatggca ttgtttaaat
2351 cgtcggattc caaagaagcc tgcaccttcg ttcgtactgc cgattctgtc
2401 ctacttaatg actgtccgac cgttagtagg gttttggttg acgaggtcgt
2451 gctgcttcat tttggtcaat tgtgtgccgt gatgtctaag ctgaaggctg
2501 ttcgagctat atgttttggg gattcggagc agattgcttt ttcttctcgt
2551 gacgcctcgt ttgacatgcg tttctctaag attattcctg atgaaactag
2601 tgatgcggat actacattcc gtagcccaca agacgtcgtg ccgcttgtgc
2651 gtttaatggc tacgaaggct ctcccgaaag gaactcattc gaagtacatg
2701 aaatgggttt ctcaatctaa agtgaagaga tctgttacat ctcgtgccat
2751 cgctagtgtg acactggttg acctggattc ttccaggttt tatatcacga
2801 tgacccaagc tgataaggcc tcactgattt cgagagcgaa agagatgaat
2851 ctaccaaaga ctttctggga cgaaaggatc aaaaccgtgc atgaatctca
2901 aggcatttct gaagatcatg ttactttggt aagattgaag agcacaaagt
2951 gtgacctgtt caagaaattt tcatattgtc ttgttgcctt gacaagacac
3001 aaggtcacat tccgctacga gtattgtggt gtattgaacg gcgatttaat
3051 tgccgaatgt attgctcgtg cttagcggac tccctccttc gggcgggtgc
3101 tgagttggcg gtaatctaca aaccgtctga agtcactaaa cactttgtgg
3151 tgaacgggtt gtccatccag ctaacggcta aaatggtcag tcgtggagaa
3201 atatacgcca gtagacttac aagtctttga ggtgcccttg aaaccatctc
3251 ctaggtttct tcggaaggac ttcggtccgt gtaccgctag tacaagatac
3301 tagcttaggt acgggctacc ccccccttcc ccccatttta tgggggcctc
3351 caaaaggaga cca