Sequence of DPV Tomato yellow leaf curl virus
Tomato yellow leaf curl virus - Il isolate TYLCV-IL[IR:Boj:28-5], complete genome.
ACC No: KC106643
Dated: 2013-06-27 | Length: 2781 | CRC: -485990654
ID KC106643; SV 1; circular; genomic DNA; STD; VRL; 2781 BP.
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AC KC106643;
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DT 27-JUN-2013 (Rel. 117, Created)
DT 27-JUN-2013 (Rel. 117, Last updated, Version 1)
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DE Tomato yellow leaf curl virus - Il isolate TYLCV-IL[IR:Boj:28-5], complete
DE genome.
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KW .
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OS Tomato yellow leaf curl virus - Il
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2781
RA Hosseinzadeh M.R., Shamsbakhsh M., Brown J.K., Kazempour-Osalou S.;
RT "Genomic diversity of the severe strain isolates of Tomato yellow leaf curl
RT virus (TYLCV-IL) in Iran";
RL Unpublished.
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RN [2]
RP 1-2781
RA Hosseinzadeh M.R., Shamsbakhsh M., Brown J.K., Kazempour-Osalou S.;
RT ;
RL Submitted (31-OCT-2012) to the INSDC.
RL Plant Pathology Department, Tarbiat Modares University, Tehran, Iran
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CC ##Assembly-Data-START##
CC Assembly Method :: Chromas v. Lite 2.01
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .2781
FT /organism="Tomato yellow leaf curl virus - Il"
FT /host="Datura stramonium"
FT /isolate="TYLCV-IL[IR:Boj:28-5]"
FT /mol_type="genomic DNA"
FT /country="Iran:Bojnurd"
FT /collection_date="20-Aug-2011"
FT /db_xref="taxon:66366"
FT gene 148. .498
FT /gene="V2"
FT CDS 148. .498
FT /codon_start=1
FT /gene="V2"
FT /product="movement-like protein"
FT /protein_id="AGO02090.1"
FT /translation="MWDPLLNDFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLVRDL
FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV
FT PKAQNIQNVSKP"
FT gene 308. .1084
FT /gene="V1"
FT CDS 308. .1084
FT /codon_start=1
FT /gene="V1"
FT /product="coat protein"
FT /protein_id="AGO02091.1"
FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAVPIVQGTNKRRSW
FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH
FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGNSPMDFGQVFNMFDN
FT EPSTSTVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFKINSHVTYNHQEAAKYE
FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN"
FT gene complement(1081. .1485)
FT /gene="C3"
FT CDS complement(1081. .1485)
FT /codon_start=1
FT /gene="C3"
FT /product="replication enhancer protein"
FT /protein_id="AGO02092.1"
FT /translation="MDSRTGELITAPQAENGVFIWEINNPLYFKITEHSQRPFLMNHDI
FT ISIQIRFNHNIRKVMGIHKCFLNFRIWTTLQPQTGRFLRVFSYEVLKYLDCLGVISINN
FT VIRAVDHVLYDVLENTINVTETHDIKYKFY"
FT gene complement(1226. .1633)
FT /gene="C2"
FT CDS complement(1226. .1633)
FT /codon_start=1
FT /gene="C2"
FT /product="transcription activator protein"
FT /protein_id="AGO02093.1"
FT /translation="MQPSSPSTSHCSQVSIKVKHKISKKKTIRRKRVDLDCGCSYYLHL
FT NCNNHGFTHRGTHHCSSGREWRFYLGDKQSPLFQDNRTQPEAISNEPRHHFHSDKIQPQ
FT HQEGNGDSQMFSQLPNLDDITASDWSFLKSI"
FT gene complement(1542. .2615)
FT /gene="C1"
FT CDS complement(1542. .2615)
FT /codon_start=1
FT /gene="C1"
FT /product="replication-associated protein"
FT /protein_id="AGO02095.1"
FT /translation="MPRLFKINAKNYFLTYPNCSLSKEEALSQLLALNTPTNKKFIRVA
FT HELHEDGSPHLHVLIQFEGKYQCKNQRFFDLSSPSRSAHFHPNIQAAKSSTDVKTYVEK
FT DGDFIDFGIFQIDSRSARGGQQSANDAYAEALNSGRKSEALNILKEKAPKDYILQFHNL
FT SSNLDRIFQEPPAPYISPFLSSSFNQVPDELEVWVSENVMSSAARPWRPNSIIIEGDSR
FT TGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQS
FT NTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNATFVTLYEPLFA
FT SINQGQTQDIQEENNKA"
FT gene complement(2171. .2479)
FT /gene="C4"
FT CDS complement(2171. .2479)
FT /codon_start=1
FT /gene="C4"
FT /product="C4 protein"
FT /protein_id="AGO02094.1"
FT /translation="MNYMKMGLLISMFSSSSKESTNVRTNGSSIYPLQAGQHISIRTFR
FT QLRAQQMSRPTWRKTETSLILEFSKSIADQLEEVSNLPTTHMPKHSIQAENPRPSIY"
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SQ Sequence 2781 BP; 772 A; 535 C; 602 G; 872 T; 0 other;
kc106643 Length: 2781 27-JUN-2013 Type: N Check: 467 ..
1 accggatggc cgcgcctttt ctttttatgt ggtccccacg agtgttccgc
51 atacgtcact gtcaaccaat caaattgcat cctcaaacgt tagataagtg
101 ttcatttgtc tatatatact tggtccccaa gtattttgtc ttgcaatatg
151 tgggacccac ttctaaatga ttttcctgaa tctgttcacg gatttcgttg
201 tatgttagct attaaatatt tgcagtctgt tgaggaaact tacgagccca
251 atacattggg ccacgattta gttagggatc ttatatctgt tgtaagggcc
301 cgtgactatg tcgaagcgac caggcgatat aatcatttcc acgcccgtct
351 cgaaggttcg ccgaaggctg aacttcgaca gcccatacag cagccgtgct
401 gctgtcccca ttgtccaagg cacaaacaag cgacgatcat ggacgtacag
451 gcccatgtac cgaaagccca gaatatacag aatgtatcga agccctgatg
501 ttccccgtgg atgtgaaggc ccatgtaaag tccagtctta tgagcaacgg
551 gatgatatta agcatactgg tattgttcgt tgtgttagtg atgttactcg
601 tggatctgga attactcaca gagtgggtaa gaggttctgt gttaaatcga
651 tatatttttt aggtaaagtc tggatggatg aaaatatcaa gaagcagaat
701 cacactaatc aggtcatgtt cttcttagtc cgtgatagaa ggccctatgg
751 aaacagccca atggattttg gacaggtttt taatatgttc gataatgagc
801 ccagtacctc aaccgtgaag aatgatttgc gggatagatt tcaagtgatg
851 aggaaatttc atgctacagt tattggtggg ccctctggaa tgaaggaaca
901 ggcattagtt aagagatttt ttaaaattaa cagtcatgta acttataatc
951 atcaggaggc agccaagtac gagaaccata ctgaaaatgc cttgttattg
1001 tatatggcat gtacgcatgc ctctaatcca gtgtatgcaa ctatgaaaat
1051 acgcatatat ttctatgatt caatatcaaa ttaataaaat ttatatttta
1101 tatcatgagt ttctgttaca tttattgtgt tttcaagtac atcatacaac
1151 acatgatcaa ctgctctgat tacattgtta atggaaatta caccaagaca
1201 atctaaatac ttaagaactt catagctaaa tactcttaag aaacgaccag
1251 tctgaggctg taatgtcgtc caaattcgga agttgagaaa acatttgtga
1301 atccccatta ccttcctgat gttgtggttg aatcttatct gaatggaaat
1351 gatgtcgtgg ttcattagaa atggcctctg gctgtgttct gttatcttga
1401 aatagagggg attgtttatc tcccagataa aaacgccatt ctctgcctga
1451 ggagcagtga tgagttcccc tgtgcgtgaa tccatgatta ttgcagttga
1501 ggtggaggta gtatgagcag ccacagtcta ggtctacacg cttacgcctt
1551 attgttttct tcttggatat cttgtgtttg accttgattg atacttgcga
1601 acagtggctc gtagagggtg acgaaggttg cattcttgag agcccaattt
1651 ttcaaggata tgtttttttc ctcgtctaga tattccctat atgaggaggt
1701 aggtcctgga ttgcagagga agatagtggg aattccccct ttaatttgaa
1751 tgggctttcc gtactttgtg ttgctttgcc agtccctctg ggcccccatg
1801 aattccttga agtgctttaa atagtgcggg tctacgtcat caatgacgtt
1851 gtaccacgca tcattactgt acacctttgg acttaggtct agatgtccac
1901 ataaataatt atgtgggcct agagacctgg cccacattgt tttccctgtt
1951 ctgctatcac cctcgatgat aatactatta ggtctccatg gccgcgcagc
2001 ggaagacatg acgttctctg acacccatac ttcaagttca tctggaactt
2051 gattaaaaga tgaagataaa aagggagaaa tataaggagc cggaggctcc
2101 tgaaaaatcc tatctaaatt tgaacttaaa ttatgaaatt gtaaaatata
2151 atcctttggg gccttctctt tcaatatatt gagggcctcg gattttctgc
2201 ctgaattgag tgcttcggca tatgcgtcgt tggcagattg ctgacctcct
2251 ctagctgatc tgctatcgat ttggaaaatt ccaaaatcaa tgaagtctcc
2301 gtctttctcc acgtaggtct tgacatctgt tgagctctta gctgcctgaa
2351 tgttcggatg gaaatgtgct gacctgcttg gagaggataa atcgaagaac
2401 cgttggttct tacattggta ctttccttcg aactggatga gaacatggag
2451 atgaggagac ccatcttcat gtagttcatg cgcaactcgt atgaatttct
2501 tgttagttgg tgtatttagg gcaagtaatt gggaaagtgc ttcttcttta
2551 gagagagaac aattaggata agtcaagaaa taatttttgg catttatttt
2601 aaatagacga ggcatggcta cagttatcgg tgtccctcaa agctctacag
2651 caatcggtgt atccggagtc ttatttatat ctagacacca atggctattt
2701 ggtaatttcg taaaagtata atgtaattca aaattcaaaa ttcaaaaatc
2751 aaatcattaa agcggccatc cgtataatat t