Sequence of DPV Grapevine fanleaf virus satellite RNA

Grapevine fanleaf virus satellite RNA strain R2, complete genome.

ACC No: KC162000

Dated: 2013-02-17 | Length: 1140 | CRC: 33334703

                
ID   KC162000; SV 1; linear; genomic RNA; STD; VRL; 1140 BP.
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AC   KC162000;
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DT   17-FEB-2013 (Rel. 115, Created)
DT   17-FEB-2013 (Rel. 115, Last updated, Version 1)
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DE   Grapevine fanleaf virus satellite RNA strain R2, complete genome.
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KW   .
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OS   Grapevine fanleaf virus satellite RNA
OC   Viruses; Satellites; Satellite Nucleic Acids;
OC   Single stranded RNA satellites; Large single stranded RNA satellites.
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RN   [1]
RP   1-1140
RA   Gottula J., Fuchs M.;
RT   "Evolutionary Biology of the GFLV satellite RNA";
RL   Unpublished.
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RN   [2]
RP   1-1140
RA   Gottula J., Fuchs M.;
RT   ;
RL   Submitted (13-NOV-2012) to the INSDC.
RL   Plant Pathology and Plant-Microbe Biology, Cornell University New York
RL   State Agricultural Experiment Station, 630 W. North Street, Geneva, NY
RL   14456, USA
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CC   ##Assembly-Data-START##
CC   Assembly Method       :: Lasergene v. 9
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1140
FT                   /organism="Grapevine fanleaf virus satellite RNA"
FT                   /host="Vitis vinifera"
FT                   /strain="R2"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /collection_date="14-May-2010"
FT                   /db_xref="taxon:141860"
FT   CDS             25. .1065
FT                   /codon_start=1
FT                   /product="P3"
FT                   /protein_id="AGE91709.1"
FT                   /translation="MLAQKIPSLTHSPRVPMELLVPTEYARLFSKKQLERMLALACKHR
FT                   ARQAAQAVSKRTSRDRNGSKIMGQGPSAVAPRVSLGHKQQSDGGASLTPVKSKRAARRA
FT                   RRRAAAKKAKAKTGTLPVQKVGLSRVQAVGFTGRASYLSSLVSGASNSKAKMEVVSSPP
FT                   KTKKAPIVDKGAFTLTSITPAECRKRAGCDFHPITGSFRSGNVALNAYCTRSREGCGEC
FT                   KACVDRYCSQRFARSFEQIGTSRVILVEAVNGDPSGEMDSPSAAEPPGFWAPAEMQAPS
FT                   GEGRSLKRCDVVTLARVTPVLRMLRRADPTLVDSKLLWESAFRTVFPQRKCAYPYGCFT
FT                   RGSSCG"
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SQ   Sequence 1140 BP; 247 A; 290 C; 336 G; 267 T; 0 other;

kc162000 Length: 1140  17-FEB-2013  Type: N  Check: 3955  ..

       1  catgaaaaat tttctaaggc tcttatgcta gcgcagaaga ttccttcttt
      51  gactcactca ccaagagttc ctatggaact cttggtacct accgagtatg
     101  ctagactgtt ttccaagaaa cagctcgagc gcatgctcgc attggcgtgt
     151  aagcaccgtg cacgtcaagc tgctcaggca gtaagcaaac ggacctcccg
     201  agaccgaaat gggagtaaaa taatgggtca gggtccttct gctgtggccc
     251  cgcgagtgtc gcttggacac aaacagcagt cagatggagg ggcgagtcta
     301  accccagtga agtcgaagcg tgcggcgcgg cgtgcaaggc gccgtgctgc
     351  cgctaaaaag gcgaaagcca agaccgggac cttacccgta caaaaggttg
     401  ggctatcgcg tgtccaagct gttgggttca cgggccgggc gagttatttg
     451  tccagcctgg tttcgggggc ttccaacagc aaagccaaaa tggaggtggt
     501  gagctcacct cccaaaacaa aaaaagctcc catcgtcgat aagggtgctt
     551  ttacccttac ttctatcaca ccggctgagt gccggaagag ggctgggtgc
     601  gatttccatc ccattacggg ttctttccga tctgggaatg tagcccttaa
     651  tgcgtattgc acccgctctc gtgagggatg cggcgagtgc aaggcctgtg
     701  tggacaggta ttgctcccag cggttcgcca ggagctttga acagattggc
     751  acttcgcgtg tcattctggt cgaagccgtg aatggcgatc catccggaga
     801  gatggacagc cctagtgctg cggaacctcc tgggttctgg gctcctgcag
     851  aaatgcaggc tccttcggga gaagggcgat cccttaaaag gtgcgatgtg
     901  gtgacactcg cacgcgtgac acccgtttta cggatgttgc gtagagctga
     951  ccccactctt gtggacagca aacttttatg ggagtccgct ttccggacgg
    1001  tttttcctca gcgcaagtgc gcgtatcctt acggctgctt cacgcgtggg
    1051  agtagttgtg ggtagggaaa actgacggtg gggcttcgtt tgtttatagt
    1101  ccggcgcaag ctgggatttt ggttgctcat tagccaactc