Sequence of DPV Grapevine fanleaf virus

Grapevine fanleaf virus strain R6 P2 polyprotein gene, partial cds.

ACC No: KC162001

Dated: 2013-02-17 | Length: 2410 | CRC: -1843169945

                
ID   KC162001; SV 1; linear; genomic RNA; STD; VRL; 2410 BP.
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AC   KC162001;
XX
DT   17-FEB-2013 (Rel. 115, Created)
DT   17-FEB-2013 (Rel. 115, Last updated, Version 1)
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DE   Grapevine fanleaf virus strain R6 P2 polyprotein gene, partial cds.
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KW   .
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OS   Grapevine fanleaf virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales;
OC   Secoviridae; Comovirinae; Nepovirus; Subgroup A.
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RN   [1]
RP   1-2410
RA   Gottula J., Fuchs M.;
RT   "Evolutionary Biology of the GFLV satellite RNA";
RL   Unpublished.
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RN   [2]
RP   1-2410
RA   Gottula J., Fuchs M.;
RT   ;
RL   Submitted (13-NOV-2012) to the INSDC.
RL   Plant Pathology and Plant-Microbe Biology, Cornell University New York
RL   State Agricultural Experiment Station, 630 W. North Street, Geneva, NY
RL   14456, USA
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CC   ##Assembly-Data-START##
CC   Assembly Method       :: Lasergene v. 9
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
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FH   Key             Location/Qualifiers
FH
FT   source          1. .2410
FT                   /organism="Grapevine fanleaf virus"
FT                   /host="Vitis vinifera"
FT                   /strain="R6"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /collection_date="14-May-2010"
FT                   /db_xref="taxon:12274"
FT   CDS             <1. .2221
FT                   /codon_start=2
FT                   /product="P2 polyprotein"
FT                   /note="contains 2B and 2C"
FT                   /protein_id="AGE91710.1"
FT                   /translation="PTGENTLEILYNPVSDEEMDDYRDRGMSAVVIDALEIAINPFGMP
FT                   GNPTDLTVVATYGHERNMERAFIGSSSTFLGNGLARAIFFPGLQYSQEEPRRESLIRLY
FT                   VASTNATVDPDSVLAAISVGTLRQHIGSLHYRTVASSVHTAQVQGTTLRATMMGNAVVV
FT                   SPEGGLVTGVPEANVHIGGSSSMRMVGPLAWENVEEPGQTFSIRSRSRSVRIDRNVDLP
FT                   QLEAEPRMSSTVRGLAGRGVVYIPKDCQEKRYLGTLNIRDMISDFKGVQYEKWITAGLV
FT                   MPIFKVVVRLPANAFTGLTWVMSFDAYNRITSRITTSADPVYTLSVPHWLIHHKLGTFS
FT                   CEIDYGELCGHAMWFRSTTFESPRLHFTCLTGNNKELAADWQAVVELYAELEEATSFLG
FT                   KPTLVFDPGVFDGKFKFLTCPPIFFDLTAVTALKSAGLTLGQVPMVGTTKVYNLNSALV
FT                   SCVLGMGGTIKGRVHICAPIFYSIVLWVVSEWNGTTMDWNELFKYPGVYVEEDGSFEVK
FT                   IRSPYHRTPARLLAGQSQRDMSSLNFYAIAGPIAPSGETARLPIVVQIEEIVRPDLSLP
FT                   SFEEDYFVWVDFSEFTLDKEEIEIGSRFFDFTSNTCRVSMGENPFAAMIACHGLHSGIL
FT                   DLKLQWSLNTEFGKSSGSVTITKLVGDKAMGLDGPSQVFALQKLEGTTELLIGNFAGAN
FT                   PNTHFSLYSRWMAIKLDQAKSIKVLRVLCKPRPGFSFYGRTSFPV"
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SQ   Sequence 2410 BP; 595 A; 461 C; 606 G; 748 T; 0 other;

kc162001 Length: 2410  17-FEB-2013  Type: N  Check: 3020  ..

       1  accaacaggg gaaaatactt tggaaatatt gtataaccct gtttctgatg
      51  aggaaatgga tgactaccgt gacaggggta tgtcagcagt cgtgattgat
     101  gcgcttgaaa ttgccattaa tccttttggg atgccaggca atccgactga
     151  tcttactgtc gttgcaacat atgggcatga acgtaatatg gagcgtgcct
     201  ttattggttc ttcttccacg tttcttggaa acgggttagc aagagccatt
     251  ttctttcccg gtttgcaata tagccaggaa gaacctaggc gcgaatcttt
     301  aattcgcttg tatgttgctt caactaacgc cacagttgat cctgattcag
     351  ttttggcggc cattagtgtt ggaactttgc gccagcacat tggttcgttg
     401  cactatagaa ctgtggctag ttcggtgcat actgcccaag tgcaaggcac
     451  taccctaagg gcgactatga tgggtaatgc tgtcgtagtt tctcctgaag
     501  gaggccttgt aactggtgtg cctgaagcca atgtacatat tggtggaagt
     551  tccagtatgc gaatggtagg tcccctggca tgggaaaatg ttgaggaacc
     601  agggcaaacc ttctctatca gaagtcgatc gcgatctgtg aggattgaca
     651  ggaatgttga ccttccccaa cttgaggccg aacccagaat gagttcgacc
     701  gtgagggggt tggctggtag aggagttgtt tatattccca aggattgcca
     751  ggagaaaagg tacttgggca ccctaaatat acgtgacatg atttcagatt
     801  tcaagggtgt ccagtacgaa aaatggataa ctgcaggctt ggtcatgcct
     851  atttttaaag tcgttgttag gctacctgca aacgccttta ctgggctgac
     901  atgggtgatg agcttcgatg cttataatcg gataactagt aggataacta
     951  ctagtgcaga tcctgtatat accctgtctg tccctcattg gcttatccat
    1001  cataagttgg gcacgttttc ttgtgagatt gactatggag aattgtgtgg
    1051  ccatgccatg tggtttagat ccacaacttt tgaatctcca aggttgcatt
    1101  tcacttgttt aacgggcaac aacaaggagt tggcggcaga ctggcaagct
    1151  gtcgtagaac tgtatgccga gcttgaagag gctacgtcct ttcttggaaa
    1201  gcctacattg gtgtttgatc caggggtttt cgatggcaaa ttcaagttct
    1251  taacttgccc tcccatattc tttgatttga cagccgttac ggctctcaaa
    1301  agcgctgggc tgacgttggg ccaagtccca atggttggta ctacaaaagt
    1351  ttacaatcta aacagcgctc ttgtgagttg tgttctaggt atgggaggta
    1401  ctattaaagg aagggtgcat atttgcgcgc caatctttta tagtattgtt
    1451  ttgtgggttg tcagtgagtg gaacgggacc actatggatt ggaatgaact
    1501  gttcaaatat cccggggtgt atgtggaaga agatggaagt tttgaagtta
    1551  aaatccgctc tccatatcac cgaactcctg ctagattgct tgctggtcaa
    1601  agccagaggg acatgagctc tctgaatttc tatgcaatag caggacccat
    1651  tgctccatcg ggggaaacag cacgactccc tattgttgta caaattgaag
    1701  aaattgtgcg tccagacctt tccctaccaa gttttgagga agattacttt
    1751  gtgtgggtgg atttttctga attcactctt gacaaagaag agattgagat
    1801  tggttctcgt ttctttgatt ttacttcaaa tacttgtagg gtttctatgg
    1851  gagagaaccc gtttgcagca atgattgctt gccatggatt acatagtggt
    1901  atattggacc tcaaacttca atggagtcta aatactgaat ttggcaagag
    1951  cagtgggagc gtcaccatta caaagctggt tggtgacaag gccatgggcc
    2001  tggatgggcc ttcacaagtg tttgccttac agaaactgga gggaactacg
    2051  gagttgttga ttggaaattt tgcaggtgca aatccaaaca ctcatttttc
    2101  tctctatagt cggtggatgg caatcaaatt ggaccaagca aagagtatca
    2151  aggtactccg cgttttgtgt aaaccccgtc cgggttttag tttttatgga
    2201  agaaccagct ttccagtcta gggtatctga ctttaaaaga cccatataca
    2251  tatgtttatt tttgttgtaa tcgtgtgtaa tgttttgtgt tattgtttgt
    2301  tttaacttgt tttctgcctt tgtgtgttta ttttcatgct tttggtggcg
    2351  atagtgtgtt gtttgtcctt tggacacact gccttgttgg acacaaaaag
    2401  attttccttt