Sequence of DPV Rosa rugosa leaf distortion virus
Rosa rugosa leaf distortion virus isolate MN-3, complete genome.
ACC No: KC166238
Dated: 2013-02-25 | Length: 3971 | CRC: -1060981424
ID KC166238; SV 1; linear; genomic RNA; STD; VRL; 3971 BP.
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AC KC166238;
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DT 25-FEB-2013 (Rel. 115, Created)
DT 25-FEB-2013 (Rel. 115, Last updated, Version 1)
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DE Rosa rugosa leaf distortion virus isolate MN-3, complete genome.
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KW .
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OS Rosa rugosa leaf distortion virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae.
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RN [1]
RP 1-3971
RA Mollov D., Lockhart B.;
RT "Complete genome sequence of Rosa rugosa leaf distortion virus";
RL Unpublished.
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RN [2]
RP 1-3971
RA Mollov D., Lockhart B.;
RT ;
RL Submitted (13-NOV-2012) to the INSDC.
RL Plant Pathology, University of Minnesota, 1991 Upper Buford Circle, St.
RL Paul, MN 55108, USA
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CC ##Assembly-Data-START##
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .3971
FT /organism="Rosa rugosa leaf distortion virus"
FT /host="Rosa rugosa cv. Charles Albanel"
FT /isolate="MN-3"
FT /mol_type="genomic RNA"
FT /country="USA:Minnesota"
FT /collection_date="Jun-2009"
FT /db_xref="taxon:535898"
FT 5'UTR 1. .6
FT CDS 7. .2292
FT /codon_start=1
FT /transl_except=(pos:718. .720,aa:OTHER)
FT /product="RNA-dependent RNA polymerase"
FT /note="p87; readthrough protein"
FT /protein_id="AGF70694.1"
FT /translation="MSLFFELAYLTAKAGFVVAKELALLATQIRNDEIVHIDVQTDRVR
FT RVFGIQGREIIPTSDCTDLLNATQDLVVADPDLHEEECLEDIKEEVKGDGGEVSQKVVR
FT RRVRKKLPFACILAADAKNHFGGVPSACRANELSVTKYLVSKCKERKLTVLQTRQVSSL
FT AFCLVFTPDSNDKSIYQFLNSESVFERRCDYLKSQSVESCWMQLFSSPWNPKAWRRVIL
FT RLSSLGPQEAFRFVKXGCLMETCGVDTKVFRGEHHWVKEGREAALPPPRKLYKISGLSP
FT QVNWGVHNSSFVNLRRGLMERVFFVERQGKLAECPQPEKGAFRDLFNRVGHRLVRLCGN
FT HSPIPRSEYPLLHEGRKRTIYENAVKSLEIAPYCRKDSYLKTFVKCEKLNFSKKPDPAP
FT RVIQPRSPRYNVELGRYLKPFEHFLYRGLDRLWGGPTVMKGYTVQQMGRILRDKWNQYR
FT RPAAIGFDMSRFDQHVSVDALRFEHRVYRECFSNDENLSRLLEHQIANSGVAYAKDGWL
FT KYQVEGKRMSGDVNTAAGNCLLACCITYHLMQAAGISCSLVNNGDDCVVFLESEHCRAV
FT EDILTEGWLKFGFTCIAERPVFELEKVEFCQMQPVLVGGDYCLVRNPRVSLSKDAHSTT
FT PFDSVKLAREWAYSIGRGGLSLTSGVPVVQEFYQCLLRNGKQHSKRKRTAHFYGDYYAK
FT WVDQHRGEYTAVSQESRHSFHLAFGISPDQQVAMENAYSELELVFEFAPFRNEINVFEW
FT TINHPVVI"
FT CDS 7. .720
FT /codon_start=1
FT /product="replicase protein"
FT /note="p27"
FT /protein_id="AGF70698.1"
FT /translation="MSLFFELAYLTAKAGFVVAKELALLATQIRNDEIVHIDVQTDRVR
FT RVFGIQGREIIPTSDCTDLLNATQDLVVADPDLHEEECLEDIKEEVKGDGGEVSQKVVR
FT RRVRKKLPFACILAADAKNHFGGVPSACRANELSVTKYLVSKCKERKLTVLQTRQVSSL
FT AFCLVFTPDSNDKSIYQFLNSESVFERRCDYLKSQSVESCWMQLFSSPWNPKAWRRVIL
FT RLSSLGPQEAFRFVK"
FT CDS 2069. .2287
FT /codon_start=1
FT /product="putative 8 kDa protein"
FT /note="p8"
FT /protein_id="AGF70695.1"
FT /translation="MATIMLSGWISTGVNTLLSLKSRDIVFTSRLGSARISKLLWKMHI
FT RSWSLYSNSPHLETKSTFLNGQSTTQS"
FT CDS join(2262. .2437,2439. .2610)
FT /codon_start=1
FT /ribosomal_slippage
FT /product="p12"
FT /protein_id="AGF70699.1"
FT /translation="MDNQPPSRDLSVDRTQKRGKRKNNLDVAHSGVAKSASASLVGASF
FT VTVAETASFVVTLNFEVDLRLAPPNLLVAIVLCIFFSSVLSNGNSVSYYYQANSTSDKF
FT ITVSVGNGSSG"
FT CDS 2262. .2444
FT /codon_start=1
FT /product="putative movement protein"
FT /note="p6"
FT /protein_id="AGF70696.1"
FT /translation="MDNQPPSRDLSVDRTQKRGKRKNNLDVAHSGVAKSASASLVGASF
FT VTVAETASFVVTLNF"
FT CDS 2594. .3613
FT /codon_start=1
FT /product="coat protein"
FT /note="p37"
FT /protein_id="AGF70697.1"
FT /translation="MAAADSPQVIQAASAGAQWAIKLRAKGWRSLTKLQKAQARTHGVG
FT PVTPATIVPKVTRLVNGNPGNVRRRNGEPGNAMKSMTITKQEYLGTISAGGGVKTFILD
FT PRNVRSFPQLSAFCLGYNKYKFTKLAFRYSPRVNDTTAGIICAYTSDSSDEAPRSKYQM
FT YSINPRYEAVASKPLIVSIPPTKEPKFLRDKSSDDAKLVDSGSIHCLIDGDHEGKLGEI
FT FLDLTVVLSEPTFNQCSMQEVTKTRHIKGPGYVQPSFQDGVVTLTFQASGSYLCTYSCA
FT PITSLSQTGMEEAARVTTTSTEESSGFVEVVTEEPLSSVKFQFLNPASSKFHAYVTRM"
FT 3'UTR 3614. .3971
XX
SQ Sequence 3971 BP; 953 A; 950 C; 1071 G; 997 T; 0 other;
kc166238 Length: 3971 25-FEB-2013 Type: N Check: 1249 ..
1 caaactatga gtttgttttt cgaacttgcc tacctgacag ccaaggctgg
51 gtttgtggta gctaaggagt tggcgctcct agccacccaa atccgcaacg
101 atgagattgt gcatatcgat gttcagacag accgagtgag gagggtcttc
151 ggcattcagg ggagggaaat cattcctacc tccgactgca ctgaccttct
201 caacgccacc caggacttgg tggttgctga ccctgacctc cacgaggaag
251 aatgcctcga agatatcaag gaggaggtca agggggacgg tggtgaggtg
301 tcccagaagg ttgtgaggag gagggtaagg aagaaattgc ccttcgcctg
351 catccttgcc gcggacgcca agaaccactt tggaggagtt ccatcagctt
401 gccgtgccaa cgaattgtcg gtgaccaagt acttggtctc caaatgcaag
451 gagcgcaagt tgaccgtgct gcaaacccgg caggtctcat cgctggcgtt
501 ttgccttgtt tttacacctg actctaacga taagtcaatc taccagttcc
551 tgaacagtga gtccgtgttt gagcgtagat gtgactactt gaaaagtcaa
601 agtgttgaaa gctgctggat gcagctgttc tcttccccgt ggaatccaaa
651 ggcttggcgg agggtgatcc tccgtctgag cagcctgggg cctcaagagg
701 ccttcaggtt tgttaaatag gggtgcctca tggagacctg tggtgtggac
751 acgaaagtgt tccgaggaga acaccactgg gttaaggaag gccgtgaggc
801 ggctctccct cctcctagga agttgtataa gattagcggt ctgtcccccc
851 aggttaactg gggtgttcat aatagtagtt ttgtcaacct tcgtcgtggg
901 ctcatggagc gggtcttctt tgttgagaga caagggaaac ttgctgagtg
951 tccccagcct gagaagggag cgtttaggga tcttttcaat agggtcgggc
1001 acagacttgt tagattgtgt ggaaatcatt cccccatccc gaggagcgag
1051 tatcctctgt tgcatgaggg caggaagcgc acgatctacg agaatgctgt
1101 caaatcctta gaaattgccc cctactgtag gaaagatagt tatcttaaaa
1151 cgtttgttaa gtgtgaaaag cttaatttta gtaagaagcc tgatccagct
1201 ccaagagtca ttcagccgag gagtccgcga tacaacgtgg agttgggtcg
1251 gtatttgaaa ccgtttgagc actttttata cagaggatta gataggttgt
1301 ggggcgggcc taccgttatg aagggctaca cagttcaaca aatgggtcgc
1351 atcctacgag acaagtggaa tcagtaccgg aggcctgctg cgattgggtt
1401 tgacatgagt cgatttgacc agcatgtttc cgtggacgcc ttgaggtttg
1451 aacacagggt gtaccgcgag tgcttcagca acgatgagaa tttgtccaga
1501 ttattggaac atcaaatcgc aaattccggg gttgcgtacg ccaaagatgg
1551 ttggctgaaa taccaagttg aagggaaaag gatgagtggg gacgtgaaca
1601 ccgctgccgg gaattgcctc ttggcctgtt gcatcaccta ccacctaatg
1651 caagctgctg gcatcagctg ttctctcgtt aataatgggg atgattgtgt
1701 tgtgtttctt gagtctgagc attgtcgcgc cgtcgaggat atcttgacgg
1751 aggggtggct caagttcgga ttcacctgca tagctgagcg tcccgttttt
1801 gaattggaga aagttgagtt ctgtcaaatg caacctgtgt tggtgggcgg
1851 cgattactgc cttgtgcgca acccccgtgt gagcctgagc aaggatgcgc
1901 actcaaccac cccctttgac tcggttaaat tagctaggga atgggcgtac
1951 agcattgggc gcggagggtt aagtttgacc tcgggagtcc cagttgtcca
2001 ggagttttac cagtgccttt tgcgtaacgg gaagcaacac tccaaaagga
2051 aaagaacagc gcacttctat ggcgactatt atgctaagtg ggtggatcag
2101 cacaggggtg aatacactgc tgtctctcaa gagtcgagac atagttttca
2151 cctcgcgttt gggatcagcc cggatcagca agttgctatg gaaaatgcat
2201 attcggagtt ggagcttgta ttcgaattcg ccccatttag aaacgaaatc
2251 aacgtttttg aatggacaat caaccaccca gtcgtgatct gagcgtagac
2301 cgcacccaaa agcgtggcaa acgaaagaac aacctagacg tcgcacactc
2351 tggagttgcc aaatcggcat ctgcttctct tgttggcgct agttttgtta
2401 cagttgctga aactgccagc tttgtggtca ctctcaattt ttgaagttga
2451 tttgaggttg gcgcctccga atcttctcgt cgcaatcgtc ctgtgcatct
2501 tcttttcttc tgtgctttct aacggcaatt cggtttctta ctactaccag
2551 gctaatagta ctagcgataa gtttataact gtctctgtag gaaatggcag
2601 cagcggatag tccgcaggtt attcaagctg cgtctgctgg ggcccaatgg
2651 gccatcaagc tgcgggctaa aggctggagg agcttaacca agcttcagaa
2701 agctcaagct cgcacccacg gggtcggtcc tgtgaccccc gccaccatcg
2751 tgcctaaagt caccaggctt gtcaatggca atccggggaa cgttcgtcgt
2801 cggaatggtg agcccggcaa cgctatgaaa agcatgacta tcacgaagca
2851 agagtacctc ggcaccatct cagctggagg tggtgtcaag accttcatcc
2901 tcgatccgcg caacgtgagg agcttccctc agttgagcgc attctgtttg
2951 gggtacaaca agtacaagtt cacgaaactt gctttcaggt acagtcctcg
3001 agtcaacgat accaccgcag gcatcatctg tgcctacact agtgactctt
3051 ctgatgaggc cccccgaagc aagtaccaga tgtacagcat caatcccaga
3101 tacgaggccg tagccagcaa acctctcatc gtctccatcc ctccgactaa
3151 ggaaccgaag tttcttcggg acaagtcttc tgatgacgcc aaacttgtcg
3201 acagtggttc aatccactgt ttgattgatg gtgatcatga gggaaagctt
3251 ggagaaatct ttctcgatct gaccgtggtt ctctctgagc ccacgttcaa
3301 ccagtgctcg atgcaagagg tcaccaaaac gaggcacatc aaaggaccag
3351 ggtacgtcca accctcattc caagacgggg tggttacact gacgtttcag
3401 gcgtcagggt cctacctctg tacatactcc tgtgccccga tcacatcgct
3451 gagccaaacc ggcatggaag aagctgctag agtcacgacc acgtctacag
3501 aggaaagtag cgggtttgtt gaggtggtga cagaagaacc cctcagttct
3551 gttaagttcc agttcttaaa tcctgcgtcg agcaaattcc acgcgtatgt
3601 tactagaatg tgagttgctg gagtcagacc ctggtgcgcc aacacccaga
3651 agggggtcaa ccaacttgct tttagttact gcgtgcggtc tttcctctat
3701 gataagcgtg ggcattaata atactcatga ataacccagt ctcgcatgat
3751 ggagtgaaat cttttcaccc cgtcaaacgg gccagggtta ttctgagtgt
3801 tacgatgcca tagtatctac tttgtagtta gtgcgtgtcg tcagacattg
3851 taaatatgtc gtgtcgaggt caccaggcaa aatccttcgg gtgggcgtcc
3901 tggggtctca aacctccttc ctggagggtg ttctaaagaa ggggaagttt
3951 aacccacttc ccccttcgcc c