Sequence of DPV Tomato leaf deformation virus
Tomato leaf deformation virus isolate P127:2009 C1 (C1) gene, partial cds; and C4 (C4) gene, complete cds.
ACC No: KC237087
Dated: 2013-05-14 | Length: 921 | CRC: 1391614614
ID KC237087; SV 1; linear; genomic DNA; STD; VRL; 921 BP.
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AC KC237087;
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DT 14-MAY-2013 (Rel. 116, Created)
DT 14-MAY-2013 (Rel. 116, Last updated, Version 1)
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DE Tomato leaf deformation virus isolate P127:2009 C1 (C1) gene, partial cds;
DE and C4 (C4) gene, complete cds.
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KW .
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OS Tomato leaf deformation virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RP 1-921
RX PUBMED; 23415858.
RA Sanchez-Campos S., Martinez-Ayala A., Marquez-Martin B.,
RA Aragon-Caballero L., Navas-Castillo J., Moriones E.;
RT "Fulfilling Koch's postulates confirms the monopartite nature of tomato
RT leaf deformation virus: A begomovirus native to the New World";
RL Virus Res. 173(2):286-293(2013).
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RN [2]
RP 1-921
RA Sanchez-Campos S., Martinez-Ayala A., Marquez-Martin B.,
RA Aragon-Caballero L., Navas-Castillo J., Moriones E.;
RT ;
RL Submitted (27-NOV-2012) to the INSDC.
RL Fruticultura Subtropical / Fitopatologia, IHSM La Mayora (IHSM-UMA-CSIC),
RL Camino de La Mayora, Algarrobo-Costa, Malaga 29750, Spain
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CC ##Assembly-Data-START##
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .921
FT /organism="Tomato leaf deformation virus"
FT /host="Solanum lycopersicum"
FT /isolate="P127:2009"
FT /mol_type="genomic DNA"
FT /country="Peru:Lambayeque, Mochumi"
FT /collected_by="E. Moriones"
FT /collection_date="2009"
FT /db_xref="taxon:681518"
FT gene complement(<1. .614)
FT /gene="C1"
FT CDS complement(<1. .614)
FT /codon_start=1
FT /gene="C1"
FT /product="C1"
FT /note="Rep"
FT /protein_id="AGL34896.1"
FT /translation="MPPPKAFKINAKNYFLTYPHCNLTKEEALSQLQNLETPTNKKYIK
FT IARELHEDGQHHLHVLLQFEGKFQCKNNRFFDLVSPTRSTHFHPNVQGAKSSTDVNAYV
FT DKDGDTLEWGEFQVDGRSARGGSQTANDAAAEALNSGSKEAALQIIREKLPEKYLFQFH
FT NLNCNLDKIFSKAPEPWSPPFPLSSFTNVPEEMQEWADDYFG"
FT gene complement(200. .457)
FT /gene="C4"
FT CDS complement(200. .457)
FT /codon_start=1
FT /gene="C4"
FT /product="C4"
FT /protein_id="AGL34897.1"
FT /translation="MGNIISTCYSSSKANSNVRITDSSTWYPQPGQHISIRTFRELNPA
FT PTSTPTSTRTEIHLNGENSKSTAEVLEEAAKLLTTLPQKP"
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SQ Sequence 921 BP; 234 A; 177 C; 208 G; 302 T; 0 other;
kc237087 Length: 921 14-MAY-2013 Type: N Check: 9215 ..
1 ccaaaataat catcagccca ttcttgcatc tcctccggga cgttagtgaa
51 ggaggagagt ggaaacggag gagaccatgg ctccggagcc ttcgaaaaaa
101 ttttatctaa attacaattt aaattatgaa attgaaataa atatttttca
151 gggagtttct cccttattat ttggagggct gcctctttgc taccgctatt
201 taaggcttct gcggcagcgt cgttagcagt ttggctgcct cctctagcac
251 ttctgccgtc gacttggaat tctccccatt caagtgtatc tccgtccttg
301 tcgacgtagg cgttgacgtc ggtgctggat ttagctccct gaacgttcgg
351 atggaaatgt gttgacctgg ttggggatac caggtcgaag aatctgttat
401 tcttacattg gaatttgcct tcgaactgga gtagcacgtg gagatgatgt
451 tgcccatctt cgtgaagttc ccttgcaatt ttgatatatt tcttatttgt
501 gggtgtctct agattttgca attgggaaag tgcttcttct ttggttaaat
551 tgcagtgggg atatgtaaga aaataatttt ttgcatttat cttaaaggcc
601 ttaggggggg gcattatggt aataaatatt ttggacaccg attggtttgg
651 cttctaaaac ttatagcaat cggtgtactg gagtcttatt tatagtagga
701 gttcctaaag gatctagcaa cacgtggcgg ccatccgtat aatattaccg
751 gatggccgcg cgattttttt acccccttgt taagtttggg accacacata
801 tactgacaaa accttttgtc caatcataga gcgtctgacg agcttaatta
851 ttaaattcct ttagactgag tggtctataa agacccagac aaactgtaat
901 aattgatatc tttaactcaa a