Sequence of DPV Tomato leaf deformation virus
Tomato leaf deformation virus isolate P182:2009 C1 (C1) gene, partial cds; and C4 (C4) gene, complete cds.
ACC No: KC237102
Dated: 2013-05-14 | Length: 920 | CRC: 1289078796
ID KC237102; SV 1; linear; genomic DNA; STD; VRL; 920 BP.
XX
AC KC237102;
XX
DT 14-MAY-2013 (Rel. 116, Created)
DT 14-MAY-2013 (Rel. 116, Last updated, Version 1)
XX
DE Tomato leaf deformation virus isolate P182:2009 C1 (C1) gene, partial cds;
DE and C4 (C4) gene, complete cds.
XX
KW .
XX
OS Tomato leaf deformation virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
XX
RN [1]
RP 1-920
RX PUBMED; 23415858.
RA Sanchez-Campos S., Martinez-Ayala A., Marquez-Martin B.,
RA Aragon-Caballero L., Navas-Castillo J., Moriones E.;
RT "Fulfilling Koch's postulates confirms the monopartite nature of tomato
RT leaf deformation virus: A begomovirus native to the New World";
RL Virus Res. 173(2):286-293(2013).
XX
RN [2]
RP 1-920
RA Sanchez-Campos S., Martinez-Ayala A., Marquez-Martin B.,
RA Aragon-Caballero L., Navas-Castillo J., Moriones E.;
RT ;
RL Submitted (27-NOV-2012) to the INSDC.
RL Fruticultura Subtropical / Fitopatologia, IHSM La Mayora (IHSM-UMA-CSIC),
RL Camino de La Mayora, Algarrobo-Costa, Malaga 29750, Spain
XX
CC ##Assembly-Data-START##
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
XX
FH Key Location/Qualifiers
FH
FT source 1. .920
FT /organism="Tomato leaf deformation virus"
FT /host="Solanum pennellii"
FT /isolate="P182:2009"
FT /mol_type="genomic DNA"
FT /country="Peru:Arequipa, Aplao"
FT /collected_by="E. Moriones"
FT /collection_date="2009"
FT /db_xref="taxon:681518"
FT gene complement(<1. .614)
FT /gene="C1"
FT CDS complement(<1. .614)
FT /codon_start=1
FT /gene="C1"
FT /product="C1"
FT /note="Rep"
FT /protein_id="AGL34926.1"
FT /translation="MPLPKRFKISAKNYFLTYPQCNLTKEEALSQLQNLQTPTNKKYIK
FT IARELHENGQHHLHVLLQFQGKFQCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVNSYV
FT DKDGDTLQWGEFQVDGRSARGGCQTANDAAAEALNAETKEAALQIIREKLPEKYLFQFH
FT NLNSNLDKIFTKAPEPWVPPFPLSSFTNVPEEMQEWADDYFG"
FT gene complement(200. .457)
FT /gene="C4"
FT CDS complement(200. .457)
FT /codon_start=1
FT /gene="C4"
FT /product="C4"
FT /protein_id="AGL34927.1"
FT /translation="MGNIISTCYSSSKGNSSARITDSSTWYPQPGQHISIRTFRELNPA
FT PTSTPTSTRTETLYSGENSRLTDEVLGEVAKQLTTLPQKP"
XX
SQ Sequence 920 BP; 231 A; 177 C; 217 G; 295 T; 0 other;
kc237102 Length: 920 14-MAY-2013 Type: N Check: 2854 ..
1 ccaaagtaat catcagccca ttcctgcatc tcctccggga cgttggtgaa
51 tgaggagagt ggaaacggag gaacccaagg ttccggagcc tttgtaaaaa
101 ttttatctaa attagaattt agattatgaa attgaaataa atatttttca
151 gggagttttt ccctgataat ttgtaaggct gcctctttgg tttcagcgtt
201 tagggcttct gcggcagcgt cgttagctgt ttggcaacct cccctagcac
251 ttcgtccgtc aacctggaat tctccccact gtaaagtgtc tccgtccttg
301 tcgacgtagg agttgacgtc ggagctggat ttagctccct gaatgttcgg
351 atggaaatgt gctgacctgg ttggggatac caggtcgaag aatcggttat
401 tcgtgcactg gaatttccct tggaactgga gtagcacgtg gagatgatgt
451 tgcccattct cgtgaagctc cctggcgatt ttgatgtatt tcttatttgt
501 gggtgtttgt aggttttgca attgggaaag tgcttcttct ttggttaaat
551 tgcactgggg atatgtcaag aaataatttt ttgcacttat tttaaaacgc
601 ttaggcagtg gcatttttgt aatatatgcc ttgtacccca aatggtttgg
651 cttgaaaact tatatgaatt ggggtaaagg ggtacaatat atagtaggag
701 ttcctaaagg atctagcaac acgtggaggc catccgttat aatattaccg
751 gatggccgcg cgattttttt acccccctgt taagtttggg accacaccta
801 tacggacaaa accttttgtc caatcatgga gcgtctgacg agcttaatta
851 tttattcctt tagactgagt ggtctataaa gacccagaca aactgtaata
901 attgatatct ttaactcaaa