Sequence of DPV Tomato leaf deformation virus
Tomato leaf deformation virus isolate PE64:2010 C1 (C1) gene, partial cds; and C4 (C4) gene, complete cds.
ACC No: KC237111
Dated: 2013-05-14 | Length: 921 | CRC: 1605826885
ID KC237111; SV 1; linear; genomic DNA; STD; VRL; 921 BP.
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AC KC237111;
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DT 14-MAY-2013 (Rel. 116, Created)
DT 14-MAY-2013 (Rel. 116, Last updated, Version 1)
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DE Tomato leaf deformation virus isolate PE64:2010 C1 (C1) gene, partial cds;
DE and C4 (C4) gene, complete cds.
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KW .
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OS Tomato leaf deformation virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RP 1-921
RX PUBMED; 23415858.
RA Sanchez-Campos S., Martinez-Ayala A., Marquez-Martin B.,
RA Aragon-Caballero L., Navas-Castillo J., Moriones E.;
RT "Fulfilling Koch's postulates confirms the monopartite nature of tomato
RT leaf deformation virus: A begomovirus native to the New World";
RL Virus Res. 173(2):286-293(2013).
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RN [2]
RP 1-921
RA Sanchez-Campos S., Martinez-Ayala A., Marquez-Martin B.,
RA Aragon-Caballero L., Navas-Castillo J., Moriones E.;
RT ;
RL Submitted (27-NOV-2012) to the INSDC.
RL Fruticultura Subtropical / Fitopatologia, IHSM La Mayora (IHSM-UMA-CSIC),
RL Camino de La Mayora, Algarrobo-Costa, Malaga 29750, Spain
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CC ##Assembly-Data-START##
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .921
FT /organism="Tomato leaf deformation virus"
FT /host="Solanum lycopersicum"
FT /isolate="PE64:2010"
FT /mol_type="genomic DNA"
FT /country="Peru:Arequipa, J.L. Bustamante y Rivero"
FT /collected_by="E. Moriones"
FT /collection_date="2010"
FT /db_xref="taxon:681518"
FT gene complement(<1. .614)
FT /gene="C1"
FT CDS complement(<1. .614)
FT /codon_start=1
FT /gene="C1"
FT /product="C1"
FT /note="Rep"
FT /protein_id="AGL34944.1"
FT /translation="MPPPKRFQISAKNYFLTYPHCSLTKEEALSQIQNLETPINKKYIK
FT ICRELHENGEYHLHVLIQFEGKYNCKNQRFFDLVSPTRSTHFHPNIQGAKSSSDVKSYI
FT DKDGDTLEWGEFQVDGRSARGGCQTANDAAAEALNSGSKEAALQIIREKLPEKYLFQYH
FT NLNCNLERIFSKAPEPWSPPFPLSSFTNVPEEMQEWADDYFG"
FT gene complement(200. .457)
FT /gene="C4"
FT CDS complement(200. .457)
FT /codon_start=1
FT /gene="C4"
FT /product="C4"
FT /protein_id="AGL34945.1"
FT /translation="MGNIISTCLSSSKENTTARINDSSTWYPQPGQHISIRTYRELNPA
FT PTSSPILTKTVTHSNGENSKSTAEVLEEAAKLLTTLPQKP"
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SQ Sequence 921 BP; 232 A; 171 C; 211 G; 307 T; 0 other;
kc237111 Length: 921 14-MAY-2013 Type: N Check: 4172 ..
1 ccaaaataat catcagccca ttcttgcatc tcctccggga cgttagtgaa
51 ggaggagagt ggaaacggag gagaccatgg ctctggagcc ttcgaaaaaa
101 ttctttctaa attacaattt aaattatgat attgaaataa atatttttca
151 gggagtttct cccttattat ttggagggct gcctctttgc taccgctatt
201 taaggcttct gcggcagcgt cgttagcagt ttggcagcct cctctagcac
251 ttctgccgtc gacttggaat tctccccatt cgagtgtgtc accgtctttg
301 tcaatatagg acttgacgtc ggagctggat ttagctccct gtatgttcgg
351 atggaaatgt gttgacctgg ttggggatac caggtcgaag aatcgttgat
401 tcttgcagtt gtattttcct tcgaactgga taagcacgtg gagatgatat
451 tccccatttt cgtggagttc tctgcagatt ttgatgtatt tcttgttaat
501 tggtgtttct aggttttgga tttgggaaag tgcttcttct tttgttaacg
551 agcagtgagg atatgtgagg aaatagtttt ttgcagatat ttgaaagcgt
601 ttaggcgggg gcattttggt aattattgga ttggttacca attgatgtct
651 ctccaaaact ctatatgaat tggtagaacg gtaaccaatt tatagtagga
701 gttcctaaag gatctatcaa cacgtggcgg ccatccgtta taatattacc
751 ggatggccgc gcgatttttt taccccctta ttaagtttgg gaccacacat
801 atacggacaa aaccttttgt ccaatcatgg agcgtctgac gagcttaatt
851 attaattcct ttagactgag tggtctataa agacccagac aaactgtaat
901 aattgatatc tttaactgaa a