Sequence of DPV Tomato yellow leaf curl virus
Tomato yellow leaf curl virus isolate SD-LC, complete genome.
ACC No: KC312664
Dated: 2013-03-24 | Length: 2781 | CRC: 1489855136
ID KC312664; SV 1; circular; genomic DNA; STD; VRL; 2781 BP.
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AC KC312664;
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DT 24-MAR-2013 (Rel. 116, Created)
DT 24-MAR-2013 (Rel. 116, Last updated, Version 1)
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DE Tomato yellow leaf curl virus isolate SD-LC, complete genome.
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KW .
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OS Tomato yellow leaf curl virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2781
RA Xue D., Li J., Xu X.;
RT "Phylogenetic analysis and application of multiplex PCR in detection of
RT Tomato yellow leaf curl virus in China";
RL Unpublished.
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RN [2]
RP 1-2781
RA Xue D., Li J., Xu X.;
RT ;
RL Submitted (07-DEC-2012) to the INSDC.
RL College of Horticulture, Northeast Agricultural University, No. 59, MuCai
RL Road, Harbin, Hei Longjiang 150030, China
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FH Key Location/Qualifiers
FH
FT source 1. .2781
FT /organism="Tomato yellow leaf curl virus"
FT /host="Solanum lycopersicum"
FT /isolate="SD-LC"
FT /mol_type="genomic DNA"
FT /country="China:ShanDong, liaoCheng"
FT /collection_date="07-Aug-2012"
FT /db_xref="taxon:10832"
FT gene 148. .498
FT /gene="AV2"
FT CDS 148. .498
FT /codon_start=1
FT /gene="AV2"
FT /product="AV2 protein"
FT /protein_id="AGH27803.1"
FT /translation="MWDPLLNQFPESVHGFRCMLAIKYLQSVEQTYEPNTLGHDLIRDL
FT ISVVRARDYVEATRRYNHLHARLEGSPKAELRQPIQQPSCCPHCPRHKQATILDVQAHV
FT PDAQNIQNVSKP"
FT gene 308. .1084
FT /gene="AV1"
FT CDS 308. .1084
FT /codon_start=1
FT /gene="AV1"
FT /product="AV1 protein"
FT /protein_id="AGH27804.1"
FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAVPIVQGTNKRRSW
FT TYRPMYRMPRIYRMYRSPDVPRGCEGPCKVQTYEQRDDIKHTGIVRCVSDVTRGSGITH
FT RVGKRFCVRSIYFLGKVWMDENTKKQNHTNQVMFFLVRDRRPYGNSPMDFGQVFNMFDT
FT EPSTATVKNDLRDRFQVMRKFHATVIGEPSGMKEQALVKRFFRINCHVTYNHQEAAKYE
FT NHTENALLLYMPCTHASNPVYATLKIRIYFYDSISN"
FT gene complement(1081. .1485)
FT /gene="AC3"
FT CDS complement(1081. .1485)
FT /codon_start=1
FT /gene="AC3"
FT /product="AC3 protein"
FT /protein_id="AGH27805.1"
FT /translation="MDSRTGELITAPQAENGVFIWEIINPLYFKITEHSQSPFLMNHDI
FT ISIQIRFNHNIRKILGIHTCFLNFRIWTTLQPQTGRFLRVCRYQVLKYLDSLGVISINN
FT VIRAVDHVESAVLENTINVTQTHDIKYKFY"
FT gene complement(1226. .1633)
FT /gene="AC2"
FT CDS complement(1226. .1633)
FT /codon_start=1
FT /gene="AC2"
FT /product="AC2 protein"
FT /protein_id="AGH27806.1"
FT /translation="MQPSSPSTSHCSQVSIKVQLKIAKKKPIRRKRVDLACGCSYYLHI
FT NCNNHGFTHRGTHHCSSSREWRFYLGDNQSPLFQDNRTQPESISNEPRHHFHSDKIQPQ
FT HQEDIGDSHMFSQLPNLDDITASDWSFLKSM"
FT gene complement(1542. .2615)
FT /gene="AC1"
FT CDS complement(1542. .2615)
FT /codon_start=1
FT /gene="AC1"
FT /product="AC1 protein"
FT /protein_id="AGH27807.1"
FT /translation="MPRLFKIYAKNYFLTYPNCSLSTEEALSQLKNLETPTNKKYINVC
FT RELHENGEPHLHVLIQFEGKYQCKNQRFFDLVSPNRSADFQQSIQAAKSSTDVKTYVEK
FT DGDFIDFGVFQIDGRSARGGQQSANDAYAEALNSGSKSEALNILKEKAPKDYILQFHNL
FT SSNLDRIFSPPLEVYVSPFLSSSFNQVPDELEEWVAEKVVSSAARPWRPISIVIEGDSR
FT TGKTMWARSLGPHNNLCGHLDLSPKVYSNDAWNNVIDDVDPHYLKHFKEFMGAQRDWHS
FT NTKYGKPIQIKGGIPTIFLCNRGPTSSFREYLDEEKNISLKNWALKNATFITLYEPLFA
FT SINQGPTQDSQEETNKA"
FT gene complement(2171. .2464)
FT /gene="AC4"
FT CDS complement(2171. .2464)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4 protein"
FT /protein_id="AGH27808.1"
FT /translation="MGNHISMCLSNSKASTNARTNGSSTWYPQTGQQISNRAFRQLRAQ
FT QMSRPTWRKTETSLISEFSKSMADQLEEVSNLPTTHMRRHSIQAVNPRPSIY"
XX
SQ Sequence 2781 BP; 750 A; 543 C; 613 G; 875 T; 0 other;
kc312664 Length: 2781 24-MAR-2013 Type: N Check: 5851 ..
1 accggatggc cgcgcctttt ctttttatgt ggtcctcacg agggttcccc
51 agacgtcact gtcaaccaat caaattgcat cctcaaacgt tagataagtg
101 ttcatttgtc tttatatact tggtccccaa gtagtttgtc ttgcactatg
151 tgggatccac ttctaaatca atttcctgaa tctgttcacg gatttcgttg
201 tatgttagct attaaatatt tgcagtccgt tgagcaaact tacgagccca
251 atacattggg ccacgattta attagagatc ttatatctgt tgtaagggcc
301 cgtgactatg tcgaagcgac caggcgatat aatcatctcc acgcccgtct
351 cgaaggttcg ccgaaggctg aacttcgaca gcccatacag cagccgagct
401 gctgtcccca ttgtccaagg cacaaacaag cgacgatcct ggacgtacag
451 gcccatgtac cggatgccca gaatatacag aatgtatcga agccctgatg
501 ttcctcgtgg atgtgaaggc ccgtgtaaag tccagactta tgagcaacgg
551 gacgatatta agcatactgg tattgttcgt tgtgttagtg atgttactcg
601 tggatctgga attactcaca gagtgggtaa gaggttctgt gttagatcga
651 tatatttttt aggtaaagtc tggatggatg aaaatactaa gaagcagaat
701 cacactaatc aggtcatgtt cttcttggtt cgtgacagaa ggccttatgg
751 aaacagccca atggattttg gacaggtttt taacatgttc gatactgagc
801 ccagtacggc aaccgtgaag aatgatttgc gggataggtt tcaagtgatg
851 aggaaatttc atgctacagt tattggtgag ccctctggaa tgaaggaaca
901 ggcattagtt aagagatttt ttagaattaa ctgtcatgta acttataatc
951 atcaggaggc agccaagtat gagaaccata ctgaaaacgc cttgttattg
1001 tatatgccat gtacgcatgc ctctaatcca gtgtatgcaa ctctgaaaat
1051 acgcatctat ttctatgatt caatatcaaa ttaataaaat ttatatttta
1101 tatcatgagt ttgtgttaca tttattgtgt tttcaagtac agcagattct
1151 acatgatcaa ctgctctgat tacattgtta attgaaatta caccaagact
1201 atctaaatac ttaagaactt gatatctaca tactcttaag aaacgaccag
1251 tctgaggctg taatgtcgtc caaattcgga agttgagaaa acatgtgtga
1301 atccccaata tcttcctgat gttgtggttg aatcttatct gaatggaaat
1351 gatgtcgtgg ttcattagaa atggactctg gctgtgttct gttatcttga
1401 aatagagggg attgattatc tcccagataa aaacgccatt ctctgcttga
1451 ggagcagtga tgagttcccc tgtgcgtgaa tccatgattg ttgcagttga
1501 tgtggaggta gtatgagcag ccacaggcta ggtctacacg cttacgcctt
1551 attggtttct tcttggctat cttgagttgg accttgattg atacttgcga
1601 acagtggctc gtagagggtg atgaaggttg cattcttgag agcccaattt
1651 ttcaaggata tgtttttttc ttcgtctaga tattccctaa atgaggaggt
1701 aggtcctcga ttgcagagga agatagtggg aattccccct ttaatttgaa
1751 tgggcttccc gtactttgtg ttgctatgcc agtccctctg ggcccccatg
1801 aattccttga agtgctttaa ataatgcggg tctacgtcat caatgacgtt
1851 gttccacgca tcattactgt acacctttgg gcttaggtct agatgtccac
1901 ataaattatt atgtgggcct agagacctgg cccacattgt cttgcctgtt
1951 ctgctatcac cctcaatgac aatacttatg ggtctccatg gacgcgcagc
2001 ggaagatacg accttctcgg cgacccactc ttcaagttca tctggaactt
2051 gattaaaaga agaagaaaga aatggagaaa cataaacttc taaaggagga
2101 ctaaaaatcc tatctaaatt tgaacttaaa ttatgaaatt gtaaaatata
2151 gtcctttggg gccttctctt ttaatatatt gagggcctcg gatttactgc
2201 ctgaattgag tgcctccgca tatgcgtcgt tggcagattg ctgacctcct
2251 ctagctgatc tgccatcgat ttggaaaact ccgaaatcaa tgaagtctcc
2301 gtctttctcc acgtaggtct tgacatctgt tgagctctta gctgcctgaa
2351 tgctctgttg gaaatctgct gacctgtttg gggataccag gtcgaagaac
2401 cgttggttct tgcattggta cttgccttcg aattggataa gcacatggag
2451 atgtggttcc ccattctcgt ggagttctct gcaaacgttg atgtattttt
2501 tatttgttgg ggtttctagg ttttttaatt gggaaagtgc ttcctctgta
2551 gagagagaac aattgggata tgttaggaaa taatttttgg catatatttt
2601 aaataaacga ggcatgttga aatgaattgg tgtccctcaa agctctatgg
2651 caatcggtgt atcggtgtct tacttatacc tggacaccta atggctattt
2701 ggtaattttg taaaagtaca ttgcaataca aaattcaaaa ttcaaaaatc
2751 aaatcattaa agcggccatc cgtataatat t