Sequence of DPV Sri Lankan cassava mosaic virus
Sri Lankan cassava mosaic virus-India[Attur:2009] segment DNA-A, complete sequence.
ACC No: KC424490
Dated: 2013-04-02 | Length: 2758 | CRC: -242816451
ID KC424490; SV 1; circular; genomic DNA; STD; VRL; 2758 BP.
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AC KC424490;
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DT 02-APR-2013 (Rel. 116, Created)
DT 02-APR-2013 (Rel. 116, Last updated, Version 1)
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DE Sri Lankan cassava mosaic virus-India[Attur:2009] segment DNA-A, complete
DE sequence.
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KW .
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OS Sri Lankan cassava mosaic virus-India[Attur:2009]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2758
RA Kushawaha A.K., Dasgupta I.;
RT "Sequence analysis and phylogenetic relationship of DNA-A of a begomovirus
RT associated with the mosaic disease of cassava in India";
RL Unpublished.
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RN [2]
RP 1-2758
RA Kushawaha A.K., Dasgupta I.;
RT ;
RL Submitted (29-DEC-2012) to the INSDC.
RL Department of Plant Molecular Biology, University of Delhi South Campus,
RL Benito Juarez Road, New Delhi, Delhi 110021, India
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CC ##Assembly-Data-START##
CC Assembly Method :: Gene Runner v. 3.05
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .2758
FT /organism="Sri Lankan cassava mosaic
FT virus-India[Attur:2009]"
FT /segment="DNA-A"
FT /host="Manihot esculenta"
FT /isolate="Attur"
FT /mol_type="genomic DNA"
FT /country="India:Tamil Nadu, Attur"
FT /collected_by="Indranil Dasgupta"
FT /collection_date="09-Oct-2009"
FT /identified_by="Akhilesh Kumar Kushawaha and Indranil
FT Dasgupta"
FT /db_xref="taxon:1310383"
FT /altitude="212m."
FT gene 137. .493
FT /gene="AV2"
FT CDS 137. .493
FT /codon_start=1
FT /gene="AV2"
FT /product="AV2"
FT /note="AV2 protein"
FT /protein_id="AGI16833.1"
FT /translation="MWDPLVNEFPESVHGFRCMLAVKYLQLVEGTYSPDTLGYDLIRDL
FT ISVIRAKKYVEATSRYHHFNSRLEGSSPSELRQPIQQSCCCPHCPRHKKTSLDKQAHES
FT EAQVVQDVQKPRCS"
FT gene 297. .1067
FT /gene="AV1"
FT CDS 297. .1067
FT /codon_start=1
FT /gene="AV1"
FT /product="AV1"
FT /note="coat protein CP"
FT /protein_id="AGI16832.1"
FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYSSRAAVPTVRVTKRQAWT
FT NRPMNRKPRWYRMFKSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGVGLTHR
FT VGKRFCVKSVYILGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP
FT STATVKNMHRDRYQVLRKWSATVTGGQYASKEQALVRRFFRVNNYVVYNQQEAGKYENH
FT TENALMLYMACTHASNPVYATLKIRIYFYDSVSN"
FT gene complement(1064. .1468)
FT /gene="AC3"
FT CDS complement(1064. .1468)
FT /codon_start=1
FT /gene="AC3"
FT /product="AC3 protein"
FT /note="replication enhancer protein"
FT /protein_id="AGI16836.1"
FT /translation="MDSRTGELITAAQAMNGVYIWEVPNPLYFKIIQHDSRPFNRPWDI
FT ITIQIRFNHNLRKALGLHQCWMDFKVWTTLQPQTWRFLRVFKTQVLKYLDRLGIICINT
FT VVNAVEHVLYNVIAGTDSIEQSNLIKFNVY"
FT gene complement(1209. .1616)
FT /gene="AC2"
FT CDS complement(1209. .1616)
FT /codon_start=1
FT /gene="AC2"
FT /product="AC2"
FT /note="TrAP"
FT /protein_id="AGI16835.1"
FT /translation="MRPSSPSASRSTQVPIKVQHRAAKRKAIRRRRVDLNCGCSYYVHI
FT NCHNHGFTHRGTHHCSSGNEWRIYLGGSKSPLFQNHPARQPAVQQAVGHNNHPDTLQPQ
FT PEESVGTTSMLDGFQGLDDLTASDLAFLEGI"
FT gene complement(1546. .2601)
FT /gene="AC1"
FT CDS complement(1546. .2601)
FT /codon_start=1
FT /gene="AC1"
FT /product="AC1 protein"
FT /note="replication associated protein Rep"
FT /protein_id="AGI16834.1"
FT /translation="MRNPRFRIQSKNIFLTYPKCSLTKEHLLEFFRSLSLPTNIKFIKI
FT CRELHQNGEPHLHALLQFEGKLTITNNRQFDCVHPSSSTSFHPNIQSAKSSSDVKSYID
FT KDGDTIDWGEFQIDGRSARGGQQSANDAYAAALNTGSKPEALRVIKELAPKDYVLQFHN
FT LNANLDRIFTPPPEVYVSPFSASSFDQVPDELEEWVSENVMGASARPLRPNSIVIEGDS
FT RTGKTMWARSLGPHNYLCGHLDLSPRVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQ
FT SNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEAKNSALKAWALKNATFISLSEPLY
FT SGSNQGPTQGS"
FT gene complement(2145. .2447)
FT /gene="AC4"
FT CDS complement(2145. .2447)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4 protein"
FT /protein_id="AGI16837.1"
FT /translation="MGNLTSMLCFSSKGSSQSQTIGNSIVYTQAVAPVSTPTYRALSPA
FT QTSSPTSIRMETPSTGVSFRSMEDLQEEDSNQQTTLTPQHLTQAVSQRLLESLRS"
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SQ Sequence 2758 BP; 696 A; 607 C; 655 G; 800 T; 0 other;
kc424490 Length: 2758 02-APR-2013 Type: N Check: 9712 ..
1 accggatggc cgcgcccccc gctttgtggt ggaccccccc ccacgtggag
51 atgtccccca ctcagaacgc tccctcaaag cctgtatagt tgtggtccct
101 ctttaagtac ttgctcagca agttgtaatc tgcacaatgt gggacccttt
151 ggtaaacgag ttccctgaat cagttcacgg tttccggtgt atgcttgccg
201 tgaaatatct tcagctagtt gaaggtactt attcccccga tacactcggt
251 tacgatttaa tcagagattt gatctctgtc atcagggcca aaaaatatgt
301 cgaagcgacc agcagatatc atcatttcaa ctcccgcctc gaaggttcgt
351 cgccgtctga acttcgacag cccatacagc agtcgtgctg ctgtccccac
401 tgtccgcgtc acaaaaagac aagcctggac aaacaggccc atgaatcgga
451 agcccaggtg gtacaggatg ttcaaaagcc cagatgttcc taggggatgt
501 gaaggcccat gtaaggttca atcgtttgag tccagacacg atgtggtcca
551 tataggtaag gtcatgtgca tctctgatgt cactcgtgga gttgggctta
601 ctcatcgcgt gggtaagagg ttttgcgtta agtccgttta tatcctgggt
651 aagatatgga tggatgaaaa tattaagacc aagaatcata cgaatagtgt
701 gatgttcttc cttgtaaggg atcgtaggcc tgttgataag ccccaggatt
751 ttggtgaagt gtttaatatg ttcgataatg aacctagtac agctacggtg
801 aagaacatgc atcgtgatcg ttatcaagtc ctcaggaagt ggagtgccac
851 tgtcactggt ggtcagtatg cgagcaagga acaggcttta gttaggcgtt
901 tttttagagt taataattat gttgtgtata accagcaaga ggctggcaag
951 tatgaaaatc ataccgagaa tgcattgatg ctgtacatgg cgtgtactca
1001 tgcctctaac cctgtatacg ctacgctgaa gattagaatc tacttctacg
1051 attcggtcag caattaataa acattaaatt ttattaaatt agactgctca
1101 atactgtcag tcccagcgat tacattatat aatacatgtt ctacggcgtt
1151 tacaaccgta ttaatacata taatccctaa tctatcgagg tattttaata
1201 cttgggtctt aaataccctc aagaaacgcc aggtctgagg ctgtaaggtc
1251 gtccagacct tgaaatccat ccagcattga tgtagtccca acgctttcct
1301 caggttgtgg ttgaagcgta tctggatggt tattatgtcc cacggcctgt
1351 tgaacggccg gctgtcgtgc tggatgattt tgaaatagag gggatttgga
1401 acctcccaga tatatacgcc attcattgcc tgagctgcag tgatgagttc
1451 ccctgtgcgt gaatccatgg ttgtggcagt tgatgtgtac gtagtatgag
1501 cagccgcaat tgaggtctac tctccgtcgc cgaatggcct tacgcttagc
1551 tgccctgtgt tggaccttga ttggaacctg agtagagcgg ctcgctgagg
1601 gagatgaagg tcgcattctt cagagcccaa gccttcaatg cgctattctt
1651 cgcctcgtca aggaattctt tatagctgga attgggccca ggattgcaga
1701 ggaagatagt gggaattccc cctttaattt gaactggctt cccgtacttg
1751 gtgtttgact gccagtctct ttgggccccc atgaattcct taaagtgctt
1801 tagatagtgc ggatctacgt catcaattac gttgtaccat gcatcattgc
1851 tgtaaaccct aggactcaag tccagatgtc cacacagata attgtgtgga
1901 cctaatgacc tagcccacat tgttttgcct gtacgactat cgccctcgat
1951 gactatactg ttaggtctca aaggcctcgc agaggcaccc atgacgttct
2001 ctgacaccca ctcctcaagt tcatctggaa cttggtcaaa tgaagaggct
2051 gagaagggag acacatatac ctcgggagga ggtgtaaaaa tcctatctaa
2101 attagcattt agattatgaa attgtaaaac ataatccttg ggtgctaact
2151 ccttaatgac tctaagagcc tctggcttac tgcctgtgtt aagtgctgcg
2201 gcgtaagcgt cgtttgctga ttgctgtcct cctcttgcag atcttccatc
2251 gatctgaaac tcaccccagt cgatggtgtc tccatcctta tcgatgtagg
2301 acttgacgtc tgagctggac ttagcgctct gtatgttggg gtggaaactg
2351 gtgctactgc ttgggtgtac acaatcgaat tgccgattgt ttgtgattgt
2401 gagcttccct tcgaactgaa gcagagcatg gaggtgaggt tccccattct
2451 gatggagttc tctgcaaatt ttaataaatt tgatgtttgt cggaagactc
2501 aagcttcgga agaactcgag taagtgttct ttggtgagag aacacttagg
2551 gtatgtgagg aatatatttt tggactgaat tctgaaacgt gggtttctca
2601 tctttgactc ggtcaattgg agacacccct gagcaagtct ctagtgaatt
2651 ggagacaata tatatgtgtc tccaaatggc attcttgtaa ttctcaaaag
2701 ttacaatcaa atttcaaatt tgaatttgag atccaaaagc ggccatccgt
2751 ataatatt