Sequence of DPV Soybean chlorotic blotch virus
Soybean chlorotic blotch virus strain SbCBV1, complete genome.
ACC No: KC508642
Dated: 2013-05-01 | Length: 2722 | CRC: 728414517
ID KC508642; SV 1; circular; genomic DNA; STD; VRL; 2722 BP.
XX
AC KC508642;
XX
DT 28-APR-2013 (Rel. 116, Created)
DT 01-MAY-2013 (Rel. 116, Last updated, Version 2)
XX
DE Soybean chlorotic blotch virus strain SbCBV1, complete genome.
XX
KW .
XX
OS Soybean chlorotic blotch virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
XX
RN [1]
RP 1-2722
RA Kashina B., Nielsen S.L., Nicolaisen M.;
RT "Molecular identification of Strains of Soybean Chlorotic Blotch Virus from
RT Phaseolus lunatus L. in Nigeria";
RL Unpublished.
XX
RN [2]
RP 1-2722
RA Kashina B., Nielsen S.L., Nicolaisen M.;
RT ;
RL Submitted (21-JAN-2013) to the INSDC.
RL Department of Agroecology, Aarhus University, Forsogsvej 1, Slagelse 4200,
RL Denmark
XX
CC ##Assembly-Data-START##
CC Assembly Method :: CLC Main workbench v. 6.8
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
XX
FH Key Location/Qualifiers
FH
FT source 1. .2722
FT /organism="Soybean chlorotic blotch virus"
FT /host="Phaseolus lunatus L."
FT /strain="SbCBV1"
FT /mol_type="genomic DNA"
FT /country="Nigeria"
FT /collection_date="Oct-2011"
FT /note="genotype: B1"
FT /db_xref="taxon:761702"
FT CDS 114. .473
FT /codon_start=1
FT /product="V2"
FT /note="Pre-coat"
FT /protein_id="AGK24650.1"
FT /translation="MWNPLVEPLPCTPHGLRCVLALKFLKLFEETHELSATEISQLSLL
FT KSVIHARKYHEAKRRYRNFYTFVEGSEEVELRQSTCHAHCHPQVQQEEGLGEPAHVSEA
FT HDVQDVEESRCALRL"
FT CDS 277. .1038
FT /codon_start=1
FT /product="V1"
FT /note="Coat"
FT /protein_id="AGK24656.1"
FT /translation="MKRNADIVISTPLSKVRRRLNFDSPRAMPTVIPRSNKKRAWENRP
FT MYRKPMMYRMWRSPDVPFGCEGPCKVQSYDAKHDVSHTGTVLCCSDITRGSGLTHRVGK
FT RFTIKSILLMGKIWMDDNIKLKNHTNIVTFFLVRDRRPSDKPYAFGSVFNMFDNEPTTA
FT TVKQDNRDRFQVIRKFHATVTGGQYASKEQALVKKFFKINHKVVYNNQEGAEYKNHQEN
FT ALLLYMACSHASNPVYATIKARVYFYDSVTN"
FT CDS complement(682. .972)
FT /codon_start=1
FT /product="C5"
FT /protein_id="AGK24655.1"
FT /translation="MTTCHIEKQSILLVVLVLRTFLIVVDDLVVNFKKFLHQRLLLRSI
FT LATSNCGMKLTNNLESITVILFNCRCRGFIVEHVEHTAKCIWLVRWAPIAH"
FT CDS complement(1035. .1448)
FT /codon_start=1
FT /product="C3"
FT /protein_id="AGK24651.1"
FT /translation="MDLRTGEPITAVQAGNGVYIWTVPNPLHFKVMQHHMEIPGLPYNI
FT IKLRVQFNHNLRKALGLHKCWITLTILTRLTRSTNPSGIFLRVFKTQVLRYLNSIHVIS
FT INGVIRAINHCLYDVLVGTEEVRTKYEIKFNLY"
FT CDS complement(1180. .1596)
FT /codon_start=1
FT /product="C2"
FT /protein_id="AGK24652.1"
FT /translation="MRSSSASPSHSTQVPIKVRHRQAKKRQIRRRRVDLRCGCSYFVSI
FT NCANHGFTHRGTHHCSSSREWRLYLDGPKPSALQSDATSHGNPGVAIQHNQATSAVQPQ
FT PQESVRTPQVLDNLDDIDATDPLYESVWDFLEGL"
FT CDS complement(1496. .2584)
FT /codon_start=1
FT /product="C1"
FT /protein_id="AGK24653.1"
FT /translation="MPRSGAFRVHAKNIFLTYPRCSLSKDEALELLLGVTTPVNKKFIK
FT VARELHEDGQPHLHVLLQFEGKLQITNPRLFDLVSRTSAHVFHPNVQGAKSSSDVKSYI
FT DKDGDTVSWGEFQIDARSSRGGKQSANDAYAAAINTGSPTKALQLLKEQAPKDYVLQFH
FT NIKGNLERIFMKVSTPWTCPYDPRSFNNVPDVMLDWVSVNVKDPAARPNRPISIVVEGD
FT SRTGKTMWARSLGVHNYLCGHLDLSPKVYSNNAWYNVIDDVDPHYLKHFKEFMGAQHDW
FT QSNTKYGKPIQIKGGIPTIFLCNPGPSSSYKSYLDEERNSSLKQWALKNAIFVSIAFPL
FT YTSPDQSQTSTSEKEANPTTPC"
FT CDS complement(2134. .2427)
FT /codon_start=1
FT /product="C4"
FT /protein_id="AGK24654.1"
FT /translation="MGSHISMFCCNSKVNSRSQILDCSTLSRERLLMCSTQTYKELNPA
FT PTSSPTSTRTATPCHGESFKSMQDRVVEVNNLRTTLTPQQLTREVRLRLSSY"
XX
SQ Sequence 2722 BP; 696 A; 638 C; 623 G; 765 T; 0 other;
kc508642 Length: 2722 01-MAY-2013 Type: N Check: 4747 ..
1 acctgagggc cgcgcttttg gtgccccctt tcgaccaatc agaatgcgcg
51 ctgatagcta tcataagcct tgggccgcgt ataaagtagc ccactcctta
101 ttgggctaca aacatgtgga acccattggt cgaaccactc ccctgcaccc
151 cccacggtct tcgttgtgta ctcgctctca agtttctgaa attgtttgag
201 gaaacccacg agctctcggc caccgagatt tctcaactga gtttgttaaa
251 atcagttatc cacgcaagga agtatcatga agcgaaacgc cgatatcgta
301 atttctacac ctttgtcgaa ggttcggagg aggttgaact tcgacagtcc
351 acgtgccatg cccactgtca tccccaggtc caacaagaag agggcctggg
401 agaaccggcc catgtatcgg aagcccatga tgtacaggat gtggaggagt
451 ccagatgtgc ccttcggctg tgaagggcct tgtaaggtcc agtcgtatga
501 cgccaaacat gacgttagtc acacgggtac agttctctgc tgttccgata
551 ttactcgtgg gtccggattg acacatcgtg tcggcaaaag gtttaccatc
601 aagtccattc ttttgatggg caagatttgg atggacgaca atatcaaatt
651 aaagaaccac actaatatcg tcaccttttt cttagtgcgc gataggcgcc
701 catctgacaa gccatatgca tttggcagtg tgttcaacat gttcgacaat
751 gaacccacga cagcgacagt taaacaagat aaccgtgatc gattccaagt
801 tattcgtaag tttcatgcca cagttactgg tggccaatat gcttctaagg
851 agcaggcgtt ggtgaagaaa ttttttaaaa ttaaccacaa ggtcgtctac
901 aacaatcagg aaggtgcgga gtacaagaac caccaggaga atgctttgct
951 tctctatatg gcatgtagtc atgcttctaa cccagtttat gctactatta
1001 aggctcgtgt gtatttttat gattcagtca caaattaata aagattgaat
1051 tttatttcat atttagtacg cacttcttca gtgccaacaa gtacatcgta
1101 caaacaatga ttaatggctc ttataactcc attaatcgaa attacatgaa
1151 ttgaatttaa ataacgcaac acttgagtct taaagaccct caagaaaatc
1201 ccagacggat tcgtagagcg ggtcagtcgc gtcaatatcg tcaaggttat
1251 ccaacacttg tggagtccta acgctttcct gaggttgtgg ttgaactgca
1301 ctcgtagctt gattatgttg tatggcaacc ccgggatttc catgtgatgt
1351 tgcatcactt tgaagtgcag agggtttggg accgtccaga tatagacgcc
1401 attccctgct tgaactgcag tgatgggttc ccctgtgcgt aaatccatgg
1451 tttgcgcaat taattgagac gaaataggaa cagccacagc gaagatcaac
1501 acggcgtcgt cggatttgcc tctttttcgc ttgtcgatgt ctgactttga
1551 tcgggacttg tgtagagtgg gaaggcgatg ctgacgaaga tcgcattttt
1601 caatgcccac tgcttcaggg atgaatttct ttcttcatcc aaataactct
1651 tataagagct actgggtccc gggttgcata aaaagatggt gggaattccc
1701 cctttaattt gaatcggttt accgtatttc gtgttgctct gccaatcatg
1751 ctgggccccc atgaattcct tgaagtgctt taggtagtgc ggatctacgt
1801 catcgatgac gttataccat gcattattgc tgtaaacctt tggactcagg
1851 tctagatgac cgcataggta attgtgtacc cccaaagacc gcgcccacat
1901 cgtcttcccc gttctggaat caccttcaac gacgatacta atgggtctgt
1951 taggccgcgc agcgggatct ttcacattaa cagacaccca atcaagcata
2001 acgtccggga cgttgttaaa tgaacgggga tcataaggac aagtccaggg
2051 agtggacacc ttcatgaaaa tcctttctaa attaccttta atgttgtgga
2101 actgtaaaac ataatccttc ggagcttgtt cttttagtaa ctggagagcc
2151 ttagtcggac ttcccgtgtt aattgctgcg gcgtaagcgt cgttcgcaga
2201 ttgtttacct ccacgactcg atcttgcatc gatttgaaac tctccccatg
2251 acacggtgtc gccgtccttg tcgatgtagg acttgacgtc ggagctggat
2301 ttagctcctt gtacgtttgg gtggaacaca tgagcagacg ttctcgagac
2351 aaggtcgaac agtcgaggat ttgtgatctg gagtttacct tcgaattgca
2401 gcagaacatg gagatgtggc tgcccatcct cgtgtagctc tcgagctacc
2451 ttgatgaact tcttgttcac aggtgtggtt acacccaaga gtaactctag
2501 agcttcgtct ttcgataatg agcacctggg atatgtgagg aagatattct
2551 tggcatgtac tctaaatgct ccgctcctag gcatgcttgc ttccgtacat
2601 acaccaattg gtgtaaaact ctccccccct cctatcggtg tattggggta
2651 cctaatatac tactagtgtc tatcacaata tgacatacgt gtcacacatc
2701 tagcggccct cagtataata tt