Sequence of DPV Boa arenavirus NL
Boa arenavirus NL isolate 3 segment S, complete sequence.
ACC No: KC508669
Dated: 2013-05-24 | Length: 3351 | CRC: 828821709
ID KC508669; SV 1; linear; genomic RNA; STD; VRL; 3351 BP.
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AC KC508669;
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DT 24-MAR-2013 (Rel. 116, Created)
DT 24-MAY-2013 (Rel. 116, Last updated, Version 2)
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DE Boa arenavirus NL isolate 3 segment S, complete sequence.
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KW .
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OS Boa arenavirus NL
OC Viruses; ssRNA negative-strand viruses; Arenaviridae;
OC unclassified Arenaviridae.
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RN [1]
RP 1-3351
RX PUBMED; 23468423.
RA Bodewes R., Kik M., Stalin Raj V., Schapendonk C., Haagmans B., Smits S.L.,
RA Osterhaus A.;
RT "Detection of novel divergent arenaviruses in boid snakes with inclusion
RT body disease in the Netherlands";
RL J. Gen. Virol. 94(6):1206-1210(2013).
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RN [2]
RP 1-3351
RA Bodewes R., Kik M.L., Raj V.S., Schapendonk C.M., Haagmans B.L.,
RA Smits S.L., Osterhaus A.D.;
RT ;
RL Submitted (21-JAN-2013) to the INSDC.
RL Department of Viroscience, Erasmus Medical Centre, Dr Molewaterplein 50,
RL Rotterdam 3015GE, Netherlands
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CC ##Assembly-Data-START##
CC Assembly Method :: Seqman v. 9
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .3351
FT /organism="Boa arenavirus NL"
FT /segment="S"
FT /host="Boa constrictor"
FT /isolate="3"
FT /mol_type="genomic RNA"
FT /country="Netherlands"
FT /collection_date="05-Jun-2012"
FT /db_xref="taxon:1303019"
FT CDS 135. .1418
FT /codon_start=1
FT /product="glycoprotein"
FT /note="GP protein"
FT /protein_id="AGH06039.1"
FT /translation="MAGWTQLPLFSILLLMVPQLTLGTIGEMLSLAASGNSSICHGMQF
FT TEPTQSFMGILPNESRPMFIFSIMHSETVPKVGKTLKISHDMKLFGEEALNYMIFVNRI
FT VFEPMKYHNISGSCRQQGFKACVRVYSDLVNNSRGFPSVKLGFTANELNKTHRANPNNM
FT GFKICISCRDHNGVRLVVYSKINRTAQLMMCPNELIYGFDFTVNSTSTKTDEETVLPLL
FT NVTGYSCVALHNKNMLTHHNLALSSGSKVDNTLEPGCDSNVGLFGHSTGTDYGWGLANF
FT FSAGITNSLQISQLEHVTDAIACKIAKTSNYTTTALFLLNKEEGEIRDHVIEHEIALNY
FT LLAHQGGLCNIVKGPMCCSDIDDFRRNVSDMIDRVHEEMKKFYHEPDPFGGLGTWGFYG
FT TMFGHILQWIPIMIMVIIVCFVCNWVRR"
FT CDS complement(1568. .3322)
FT /codon_start=1
FT /product="nucleocapsid protein"
FT /note="NP protein"
FT /protein_id="AGH06040.1"
FT /translation="MAALQRAAVNQLALKKKLNRVLTPYQGDLNQQIFIDIKALKQGLD
FT PKKVNDVLRRLRKETKGAKDLEKLRDLNEEVAGWSSMVAKQTTVEIDSTMLTDEEIMQC
FT VENIEIIKKKAEYKGGLRPKLSEFERDTGMSSDEHEQFNKLFSRFVPKKEENKRNEVLK
FT PRSWVGINPKDLANQFGTSPAVTITLMMMRTNSPFKDILEALNDISILDSGMFVNSAVI
FT KAMAISHACLECVEFSVPKNSSGYNVTVKSVVKAANAISGLPKLEKIVLDDENRVKVLQ
FT SLLEVQKEFGIKIVVDEERSLFEDLFYKVCVSPNGPCVISVRSELTGRGWENTIFRLRR
FT PPPYAPRLYPDLMDLDMDAIAPIKPIPASSDPSSNEMDEFIKGEKTNEEPEVEVIDPRT
FT PFLLKACEKIFRBKKPVFLDIEGSPQDPVEIAFLNTDSSEFIHIFRMPKDKENFKKSSK
FT HCHGLLLDDISNHPNLYSDKNIEALFAKLPSDSQILSQGSDIEECLKFFGRKDITVNDC
FT KWKKEDYLIYHEDLLDNYADSLPCVHSGAVKDKKGALMAPHCALLDCMMFSRKYSGKSI
FT KHPEPATI"
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SQ Sequence 3351 BP; 871 A; 728 C; 705 G; 1045 T; 2 other;
kc508669 Length: 3351 24-MAY-2013 Type: N Check: 908 ..
1 cgagttttcc agtatcgaac aaaataaata ttcaaaaggg attcatctta
51 aactagcaat cacaagggag aagacacgaa agagccagca agagatacaa
101 agaatcaggg cccttgccca caagagcagc ccccatggct ggctggactc
151 aacttccact cttctcaatt ctgttgctca tggtgcccca attgacactt
201 gggacaattg gtgagatgct ttctctagca gcatctggta actctagcat
251 ctgtcacggc atgcagttca cagagccaac tcaatcattc atgggaatct
301 taccaaatga atcccggcca atgttcatct tctcaatcat gcatagtgaa
351 acagtaccaa aggtggggaa aactttgaaa atcagccatg atatgaaact
401 ctttggtgaa gaagccctca attatatgat ctttgttaat aggattgtct
451 ttgaaccaat gaagtatcac aacatatctg gttcttgcag acagcaaggg
501 ttcaaagctt gtgtgagggt ctactctgat ttggtcaaca attccagggg
551 atttccatca gtgaaattgg ggtttacagc caatgaactc aacaagaccc
601 atagggccaa ccctaataac atgggattca agatctgcat atcctgtaga
651 gatcacaacg gggtgagatt agttgtttat agcaagatta accgtactgc
701 acaattgatg atgtgcccca atgagttaat ctacggattt gatttcaccg
751 tgaattcgac atcgacaaaa acagatgaag agactgtctt accattgctg
801 aatgtgacag gctattcctg tgtcgctctg cacaacaaga acatgctcac
851 ccaccacaat cttgctctct ccagtggttc caaagtggac aacacactag
901 agccaggttg tgattccaat gtggggcttt tcggtcatag cacaggaaca
951 gactatggct ggggtcttgc aaatttcttc agtgcaggca taactaactc
1001 acttcaaata tcacaattag aacatgtaac tgatgctatt gcatgcaaaa
1051 ttgctaaaac atccaattat acaaccacag ctctgttctt actaaacaag
1101 gaagagggtg aaatcagaga tcatgttatt gagcatgaaa tagctttaaa
1151 ctatctgcta gctcaccaag gtggactttg caatattgtg aagggtccta
1201 tgtgttgttc agacattgat gactttagga ggaatgtttc tgatatgata
1251 gacagagttc atgaagaaat gaagaagttt tatcatgagc cagatccttt
1301 tggtggtctt ggcacttggg ggttttatgg caccatgttc ggacatatct
1351 tacaatggat tccaataatg attatggtca tcatagtttg ctttgtgtgc
1401 aactgggtga gaaggtaagg caacaggacc accctccggt tctttggtgc
1451 cccgtctgcc cgccctgggt gctttgttcg ccggggggtt cttgttcttt
1501 ggttggttgg ggtccttgtt cggtcgcccg ctttgggtgc tctgtttgcc
1551 gggctgttgt tggctgccta gattgtggcg ggttctgggt gtttgatgct
1601 cttcccagag tactttctgg aaaacatcat acagtccaga agggcacagt
1651 gaggtgccat cagtgcaccc ttcttatctt taacagcccc tgaatgcaca
1701 catggtaaac tatctgcata attgtcgagc agatcttcat gataaatgag
1751 atagtcctcc tttttccatt tacaatcatt cacagttata tccttcctgc
1801 caaagaattt gaggcactct tctatgtctg aaccttgtga aagtatttga
1851 gaatcggaag gtagctttgc gaacaaggct tcaatgtttt tgtcagagta
1901 aagattagga tgattagata tgtcatccaa caacaaacca tgacaatgtt
1951 ttgatgattt tttgaaattc tccttgtcct taggcattct gaatatgtgg
2001 atgaactcac tggagtctgt gttgagaaag gcaatctcga caggatcctg
2051 aggtgatcct tcaatgtcaa ggaagactgg tttcttatyt ctgaagatct
2101 tttcacaggc cttcaaaaga aaaggtgttc tggggtctat gacttcaact
2151 tctggttctt cattggtttt ttcacccttg atgaactcat ccatttcatt
2201 ggacgatggg tccgatgatg ctgggatggg tttgataggt gctatggcat
2251 ccatatcaag atccatcaag tcaggataaa gcctgggtgc atatggtggt
2301 ggccttctca atctgaaaat tgtgttctcc cagcctctcc ctgttaactc
2351 agatctgact gaaatgacac atggcccatt tggagataca cacaccttgt
2401 agaaaagatc ttcaaacagg cttctctcct catcaacgac aatctttatt
2451 ccgaactctt tttggacttc aagaagggat tgcaggacct tgaccctgtt
2501 ctcatcatcc agtactatct tttccagttt gggtagtccc gagatggcat
2551 ttgcagcctt gactactgat tttactgtca cattgtagcc tgatgaattt
2601 tttggaacag aaaattcaac acactccara catgcatgag agattgccat
2651 cgctttgatt acagcagagt taacaaacat accagagtcc aggatggaga
2701 tatcattcag tgcctctagt atgtctttga agggtgaatt tgtcctcatc
2751 atcattaacg ttatagtgac agcaggtgag gtgccaaact gattcgctaa
2801 gtcttttggg ttgataccaa cccaggatct gggcttaagt acttcattcc
2851 tcttgttttc ttctttttta gggacaaatc tgctgaagag tttgttgaat
2901 tgttcgtgtt catcactgct cattcctgta tctctttcga actcacttaa
2951 ttttggtctt aaaccacctt tatattctgc ctttttcttt attatctcta
3001 tgttctcaac acattgcatt atttcttcat ctgtcagcat tgttgagtct
3051 atctcaactg tggtttgttt ggcaaccata cttgaccacc cagccacttc
3101 ttcatttaaa tcccttaact tctcaaggtc cttagctccc tttgtctcct
3151 ttctcaatcg tctcagtaca tcatttacct tctttggatc tagcccttgc
3201 ttcagggctt tgatgtctat gaaaatctgc tgattcaggt ccccctgata
3251 aggagtcaac actctgttta gttttttctt caatgctagc tggttgacag
3301 ccgctctttg gagagccgcc attgtgtagt cctggcttgt ctgttcgctc
3351 a