Sequence of DPV Boa arenavirus NL
Boa arenavirus NL isolate 3 segment L, complete sequence.
ACC No: KC508670
Dated: 2013-05-24 | Length: 6932 | CRC: 2133517351
ID KC508670; SV 1; linear; genomic RNA; STD; VRL; 6932 BP.
XX
AC KC508670;
XX
DT 24-MAR-2013 (Rel. 116, Created)
DT 24-MAY-2013 (Rel. 116, Last updated, Version 2)
XX
DE Boa arenavirus NL isolate 3 segment L, complete sequence.
XX
KW .
XX
OS Boa arenavirus NL
OC Viruses; ssRNA negative-strand viruses; Arenaviridae;
OC unclassified Arenaviridae.
XX
RN [1]
RP 1-6932
RX PUBMED; 23468423.
RA Bodewes R., Kik M., Stalin Raj V., Schapendonk C., Haagmans B., Smits S.L.,
RA Osterhaus A.;
RT "Detection of novel divergent arenaviruses in boid snakes with inclusion
RT body disease in the Netherlands";
RL J. Gen. Virol. 94(6):1206-1210(2013).
XX
RN [2]
RP 1-6932
RA Bodewes R., Kik M.L., Raj V.S., Schapendonk C.M., Haagmans B.L.,
RA Smits S.L., Osterhaus A.D.;
RT ;
RL Submitted (21-JAN-2013) to the INSDC.
RL Department of Viroscience, Erasmus Medical Centre, Dr Molewaterplein 50,
RL Rotterdam 3015GE, Netherlands
XX
CC ##Assembly-Data-START##
CC Assembly Method :: Seqman v. 9
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
XX
FH Key Location/Qualifiers
FH
FT source 1. .6932
FT /organism="Boa arenavirus NL"
FT /segment="L"
FT /host="Boa constrictor"
FT /isolate="3"
FT /mol_type="genomic RNA"
FT /country="Netherlands"
FT /collection_date="05-Jun-2012"
FT /db_xref="taxon:1303019"
FT CDS 119. .469
FT /codon_start=1
FT /product="Z protein"
FT /note="Z"
FT /protein_id="AGH06041.1"
FT /translation="MSESTAIGLTTEVISIITFILVVIIFIVVIVNCVAMMTLKAITLK
FT KRLMFCQGCGKNASLVILPCKNKVCMECALKMRCPVCYEACLWCENPDGSLSSLALINK
FT ERNKHRDNPPEP"
FT CDS complement(622. .6819)
FT /codon_start=1
FT /product="L polymerase"
FT /protein_id="AGH06042.1"
FT /translation="MGTISPEDAELNRLKELMLRVLSYERDLYKPNILSESAGQLAVNS
FT LKLRSTIHELNCCRDTGLKFNGEVLDMNEILDRAIGPHETVKIVVPDGYLIDRENNVIS
FT VLEASTRSDISDRNVKVELDRLKYEGMEQVTRGLGWTLNVIVISESRPRIGNIPESLMF
FT KLLSTSLSILSYFVNTSGWISEEEYIELKKSMTSYDFKTLTEEFSGQNLLFDIESDSDP
FT YYSLLQWFDTNKSSAPFSSKWDGPEITKRIEGFPRKGRQLRLLEILRNSFDGLNFESGH
FT LSSLNKLKSLNLLNTRRQQNKVYDYLSLQLFVNSVTSTDFPNGWFPSVNDRLVKVESVV
FT HGDVKCRHQLNKMIDSLTALQKESGSKTRAQDFIMLKEFLRDQLAVLKSPDELESSYGL
FT IKRNSSVPDPSISLKIVDDYPTDGGDYTKYLSPSDCQIIEKVALNLILSQKTRSTPRSS
FT HHEEFFYQSINGCLLLYKCSGEGQKAFSLLCRSNPKPKFFSFNINPSRLFPLIFSCDAI
FT DGLIDQMMMLINPILEDNDRLQPSILKQKSVNEFLVAKPFAEDKIETLSQELRYLIYGI
FT LTTPTKRLQLELQSQRYYIMDCLSLIHHVDLADKVVGKCLTYDEWFLRSLAHTLINNIL
FT ECSNIGLFLKVTWCLNISYLCHLITKETPDRLSDLRDCYEKFFKPKHQFMTNVIFNCKS
FT VDELVERMELEVNDFITRDEPTYESKPHLYEPILADFLNWLSREKFNGLDGEQLLDPKD
FT YLTSGIDVLDLTSNKSTFKRCKGMTEDLDPTYNTDKLLKRVICERLHKRVVTKRSEEAS
FT EIKDRQNGPSEKKSKSGWSPTGKPAKRTRMIYDEFSTIIQGLITELECTDTMDDFLVNI
FT GKLLKEIELDLENLSRNVREEDPKLNNKFKKYDLVLESIESLLGSEIRDLIRSTCYRTK
FT LSDFPSDLIKEDSCKSVVEDVMSKVPTDFSEADTVDVTNITAGMVRARYDSQEYFSSFK
FT FLLLWAGFNDFQGTYDHRSGPQSSFLSISNKYRGESMLSTRVTNSEALQDRLLAIKYGA
FT PTLRNILFSTLNLEMKDSEIGPNNKPLQFGLAIKEQVGGPRELYVGDSDTKLITRVLEE
FT TSRNIGNKLNNSCLNSDKKFSSFMKRIARSFFENEIVLSMDHSKWGPFNSPLQYHLMFE
FT AMEGINDIDGKRLDFSFAKTILKWHLFKAVETPQILAEDVILSSLDISLGRRDRQIGKE
FT RTFETFMVDAVLSNKPVPSQVHSWFDMGQGILHHTSDLYGSLASEYITKKIKDIFGVRS
FT STMNTSDDMVLLFHMKYKDRDDDQKDKLLLITNFLCLVSNCLNKHISPKFCCSPLVGEF
FT KSHFEVEATMVPLFTKFFAASINNFRCKTPMELFNTCDAIVEQGICNGMSLKLADSLKG
FT RMVEMLGWLGYVGDPLMKPVVSRQQDWLEGCLSYRKLRSLESWLMDVGIEKVKLEVLKL
FT ELLKVIKELRESSIAPSVAYKKMVEISRSQLGEITLWFPTLNGEFKLIVRSKLNLGTTI
FT NETCENLLIKKLINHYSRYSKQGLGLLIAEGLERSAFQSSVVTGFIGLSISLSGPCVRK
FT GDGTFLTLRESKTVIKPVAEVFPSLVMQSVCAVGDWVCGVEDELSKQANKSIYMRTSLV
FT NTAEFRFGLDELTAAIEMTMPDLFDKYLKDIVPPDKRLLMRHSWKVRPEMELLIECANE
FT GLSIFDGRIDRQEEAVVLVDYYDPSRLLRRVMRLEKRGSERTARKGLQAIINRMILDSI
FT LEPKIIDKVMVMDATKLAPYEGSMEELKTHGESGVRRYIQQVLLGRESHYRQKEDEPSE
FT ITSNNVVVYGRGTPETPLEDGTWIKGAKLGTSNPIKLQCCFQQVSSDIKIQATLITHTG
FT RAHYQDFMFLKRVIISDSDFDEPEMLDTLDFREVIIVENSKPNGKPCFLFMGCVIPLES
FT DLVGSIMTHMSETEWEELWKLVRTYFITRMKGEISCLPKARFDALWGMVSRIFGYSTVE
FT KVVDMGFHQLDSFAEFLTFTNRVFTTKGPTLVFHRLKGILVSYPAGPLLYKGHRLMLYE
FT DWVSGTPEPEALED"
XX
SQ Sequence 6932 BP; 1942 A; 1541 C; 1244 G; 2205 T; 0 other;
kc508670 Length: 6932 24-MAY-2013 Type: N Check: 726 ..
1 ctgtgtgggg atccgcgttt tacagtatct attcaaagag gcaaatccaa
51 agcgacaaga cctgaggagt gaaatcttga agggcgacat ctgtgtgtag
101 ctggctttgg gacacagcat gtcagaaagc acagctatag gtcttacaac
151 agaggtcatc tcgattataa cattcatcct tgttgtcatc atctttatag
201 tggtcatagt gaactgcgtt gccatgatga ccctcaaggc tataactctg
251 aagaaaaggc tcatgttttg tcaaggctgt ggaaaaaatg caagtcttgt
301 tattcttcca tgcaagaaca aagtctgtat ggaatgtgcc ctcaagatga
351 gatgccctgt ttgctatgag gcatgtcttt ggtgtgagaa ccccgatggg
401 tctctctcct cattagccct gatcaacaaa gaaagaaaca aacacaggga
451 caatcccccc gaaccataga gatccgacaa gcaactccac cagacaggaa
501 caaggggaga caaccaaaac aacaacaaag caacaaccca gaccaccgga
551 ggcggctctg ccgcctccgg tggtctgggg ggttcccgtg tctgtgtccg
601 ctcccgtggg cccgtgcatc tctagtcctc cagggcctca ggctctggag
651 ttcccgatac ccaatcctca tagagcatga gtctatgtcc tttatacaat
701 agtggtcctg ctggatagct cacaagtatc cccttcaatc tatgaaacac
751 caaagtggga ccttttgtgg tgaaaactct atttgtgaat gtcaggaatt
801 cggcaaagga gtcgagctga tgaaagccca tatcgaccac tttctccact
851 gttgagtaac caaaaatcct gcttaccatt ccccataaag catcaaatct
901 agcctttggg agacatgata tttctccttt catccttgtt atgaaatatg
951 ttctaactaa cttccaaagt tcttcccatt cagtttctga catatgggtc
1001 attattgacc ccactaggtc tgactccagt ggaatcacac aacccatgaa
1051 cagaaagcat ggcttcccat ttggctttga attttctaca attataacct
1101 ctctaaaatc tagtgtgtcc aacatctcag gttcatcaaa atctgagtca
1151 gagataatca ctctcttaag aaacatgaaa tcctgataat gagcacgtcc
1201 tgtgtgtgtg attaatgttg cctgaatttt tatatcactg ctgacttgtt
1251 gaaagcagca ttgtagtttt attggattag atgttcctaa cttggcacct
1301 ttgatccatg taccatcttc tagaggggtt tctggagtcc ctctcccata
1351 cacaaccaca ttgttggatg tgatttcact tggttcatcc tctttttgtc
1401 tataatgcga ctccctacct aataaaacct gttgtatgta tcttctaaca
1451 ccagattccc catgggtttt caactcttcc atagaacctt catatggggc
1501 aagttttgtc gcatccatga ccatgacctt atcaataatt ttaggctcca
1551 atattgaatc cagaatcatc ctattaatta tcgcttgtaa accctttctt
1601 gcagtccttt cagatcctct tttctcaagc ctcataactc gtctgagcaa
1651 cctacttgga tcataatagt ctactagcac gactgcctct tcctgtctgt
1701 caattctacc gtcaaaaatg gatagccctt cattggcaca ctctattagc
1751 aattccattt caggtctaac tttccaagaa tgcctcataa gcagcctctt
1801 atctggtggt acaatgtcct tcaaatattt atcaaaaaga tcaggcattg
1851 tcatctcaat agcagcagtt aattcatcta atccaaacct gaactctgcg
1901 gtgttaacaa gtgatgttct catataaatg cttttgtttg cttgtttact
1951 caactcatct tcaactccac agacccaatc accaaccgca caaaccgact
2001 gcatgactaa ggaagggaaa acttcagcga ctggtttgat tacagttttg
2051 gattctctca gagttaagaa tgtgccatca cccttcctaa cacatggacc
2101 tgacaagctt atgctcaaac caataaatcc agtcactact gaactttgga
2151 aagcagacct ctcaagcccc tctgcaatca acaagccaag accttgcttt
2201 gaatatctgg agtaatgatt gattaacttt ttgatcagca agttctcaca
2251 cgtctcattt attgttgtac ctagattgag tttgctcctg acaatcaatt
2301 tgaactctcc attgagtgtg gggaaccaca aggtaatctc tcctaattgc
2351 gatcgactta tttccaccat ctttttatat gcaacagatg gcgctattga
2401 tgattctctt aactccttaa tcacctttaa tagctcaagc ttcaacacct
2451 caagtttaac tttctctatc cccacatcca tcaaccaact ctccagtgac
2501 cgaagctttc tataagaaag acagccttcc aaccagtctt gttgtcttga
2551 cactacaggc ttcattaaag gatcaccaac ataccccaac cagcctaaca
2601 tttcaaccat ccttcctttc aatgagtcag ctaactttag agacatgcca
2651 ttgcaaattc cctgttcaac tatagcatcg cacgtgttaa agagctccat
2701 cggtgtttta catctgaaat tgttgattga ggctgcaaag aactttgtga
2751 atagaggaac cattgtggcc tcaacttcaa aatgtgactt gaattcccca
2801 acaagtggac tgcaacaaaa cttgggtgag atgtgtttat tcaaacagtt
2851 cgacaccaag cacaagaaat tagtgattag aagcagtttg tctttttgat
2901 catcatctct gtccttgtat ttcatatgga acagtaggac catatcatca
2951 gatgtattca ttgtgcttga tctaacccca aaaatatcct ttatcttttt
3001 tgttatatac tccgatgcta gagaaccata aaggtctgat gtgtgatgta
3051 gaattccttg acccatgtca aaccatgagt ggacctgtga aggcacaggt
3101 ttgttagata aaacagcatc caccatgaat gtttcaaagg ttctttcttt
3151 ccctatttgt ctatccctcc ttcccaaact tatatcaaga gatgaaagga
3201 taacatcctc agccaaaatt tggggtgttt ctaccgcctt gaataggtgc
3251 cattttagaa ttgtcttggc aaatgaaaaa tctagccgtt ttccatctat
3301 atcattgata ccctccatgg cctcaaacat caagtggtac tgaagaggac
3351 tgttaaaagg accccatttc gaatgatcca tgctcagcac tatctcattc
3401 tcaaaaaagg atctcgcaat ccttttcata aagctagaga actttttgtc
3451 tgagttgagg caactattat tgagtttatt gccaatgttt cttgaggtct
3501 cttctaggac tcttgttatt aattttgtat cagaatcccc gacatacagt
3551 tctctgggcc caccaacctg ctcctttatt gcgagtccaa attgaagtgg
3601 tttattgttt ggcccaattt cagaatcttt catttccaaa tttaatgtgg
3651 aaaaaaggat atttcttaat gtaggtgctc catactttat tgccaaaagc
3701 ctatcctgca atgcttctga attcgtgacc cttgttgaga gcatactttc
3751 tcctctatat ttattggaaa tcgataagaa ggagctttgg gggcctgatc
3801 tgtgatcata tgtcccttgg aaatcgttga atccagccca cagtaataaa
3851 aatttaaaac tggagaaata ttcttgagag tcatatctag ctctcaccat
3901 acctgctgtg atgtttgtca catccacagt atcagcttca gaaaagtctg
3951 ttggaacttt tgacatgaca tcttccacca ccgatttaca gctgtcttct
4001 ttgatcaagt ctgagggaaa gtctgacagt tttgtcctgt aacaggttga
4051 tcgtattaga tctctgattt cactacctaa tagtgattca attgattcta
4101 ggactaaatc atatttcttg aatttgttgt tcagcttagg atcttcctct
4151 ctcacattcc tagaaaggtt ctccaagtct agctcaatct ctttcaatag
4201 tttcccaata tttacaagaa agtcatccat tgtgtctgtg cattccaact
4251 ctgtgattag tccctgaatg attgtggaaa attcatcata aatcatccta
4301 gttctttttg ctggtttgcc agttggagac caacccgatt ttgatttttt
4351 ctcactggga ccattctgac gatccttgat ttcacttgcc tcttctgaac
4401 gtttagtcac aactcttttg tgcagtcttt cgcaaataac cctctttagc
4451 aatttatctg tgttgtaagt tggatcaaga tcttctgtca tccctttaca
4501 tcttttaaaa gtacttttat ttgaagttaa gtctaagacg tcaatgcctg
4551 atgtcaaata atccttaggg tccagaagtt gttcaccatc taatccattg
4601 aatttctctc ttgatagcca attcagaaag tctgctagta tcggctcata
4651 caggtgtggt tttgattcgt aagtaggctc atctcttgtt atgaaatcat
4701 tcacctcaag ctccatcctt tcaaccaatt catctactga tttgcagttg
4751 aaaatgacat tagtcatgaa ttgatgcttt ggtttaaaga atttctcgta
4801 gcagtctctt aaatccgaca gtctatcagg agtttctttt gtgatgaggt
4851 gacaaagata ggaaatgttt agacaccaag tcaccttgag gaacagacct
4901 atgttggaac attccagaat gttattaata agtgtatgag caagtgacct
4951 caggaaccac tcatcatatg tcaagcactt tccaacaact ttatctgcca
5001 aatcaacatg atgtatcagt gataagcaat ccatgatgta ataacgttga
5051 gactgaagtt ccaactgcaa ccttttggta ggggttgtca agatcccata
5101 aatcaaatac cttaactctt ggctcagggt ttctatttta tcttcagcaa
5151 aaggtttagc tactaaaaat tcattcacag acttctgctt gagaatggaa
5201 ggttgaagtc tgtcattatc ctctaatata gggttgatta gcatcatcat
5251 ttgatcaatg agtccatcaa tcgcatcaca actaaaaata agagggaata
5301 gccttgatgg attgatgtta aatgaaaaga acttgggttt tggattcgat
5351 ctacagagca aactaaatgc cttctgacct tcacctgaac acttatacaa
5401 caagaggcaa ccattaattg actggtaaaa gaattcctca tgatgacttg
5451 atcttggtgt gcttctagtt ttttgagaca atatcaaatt taatgcaact
5501 ttttcaatta tctgacaatc agatggtgat aagtattttg tgtaatcacc
5551 accatcagtt ggataatcat cgacaatctt cagactgatg cttggatctg
5601 ggacacttga atttcgtttt atcaacccgt aagatgattc caattcatca
5651 ggactcttca acactgctaa ttggtctcta aggaattcct tcagcatgat
5701 gaagtcctga gctctcgttt tacttcctga ctctttctgt aaagctgtta
5751 aagagtctat catcttgttt aactgatgtc tacatttaac atcaccatgg
5801 accactgatt caaccttaac taatctgtca ttgacacttg ggaaccaacc
5851 attgggaaag tctgttgatg tgacagaatt gacaaacaac tgcagcgaaa
5901 ggtaatcata cactttattc tgttgtcttc gtgtgttaag aagatttagg
5951 gatttcagtt tgttcagcga gctcagatgg ccagattcaa agttaagtcc
6001 atcaaaagaa tttctgagga tttctaggag tctaagttgc ctaccctttc
6051 ttggaaagcc ttcgattctc ttagtgattt ctggaccatc ccactttgag
6101 ctaaatggtg cagagctttt gtttgtatca aaccattgca gtagactgta
6151 atatgggtct gaatcagatt caatatcaaa taacagattt tgaccagaaa
6201 attcttcagt caaagtcttg aagtcgtagc tagtcattga tttctttagt
6251 tctatgtact cctcctcaga gatccagcct gacgtattga cgaaataaga
6301 taggattgaa agagatgtag acaacaactt gaacataagg gactcaggta
6351 tgttcccgat cctaggcctt gattcagata taacaattac attcagtgtc
6401 caaccgagac ccctagtgac ctgttccatt ccctcatatt tcaatctatc
6451 caactctact ttgacattgc gatcactaat atcagatctt gtgcttgctt
6501 ctagaacact aattacattg ttttctctat caataagata accatcaggt
6551 actacaattt tcactgtctc atggggacct atagctctat ctaggatctc
6601 attcatgtca agaacttcac cattgaactt caaacctgtg tctctgcaac
6651 aattcagttc gtgaatggtt gatctcagtt ttaacgagtt aactgcaagt
6701 tgtcctgcag actctgaaag tatgtttggt ttatagaggt ctcgttcata
6751 tgataggacc ctgagcatca gttctttgag tctgttgagc tctgcatctt
6801 caggactgat ggttcccatt gtggggcttg gcctggtttg gctgcgttgg
6851 ggtgtctctg ctgctgtgct tcgatgcact tctcttcaat aaagtataac
6901 tattgaagat tctcatatac gcggatcctc ag