Sequence of DPV Cucumber mosaic virus
Cucumber mosaic virus isolate RP2 segment RNA2, complete sequence.
ACC No: KC527686
Dated: 2013-06-13 | Length: 3051 | CRC: -299691793
ID KC527686; SV 1; linear; genomic RNA; STD; VRL; 3051 BP.
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AC KC527686;
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DT 13-JUN-2013 (Rel. 117, Created)
DT 13-JUN-2013 (Rel. 117, Last updated, Version 1)
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DE Cucumber mosaic virus isolate RP2 segment RNA2, complete sequence.
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KW .
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OS Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Bromoviridae;
OC Cucumovirus.
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RN [1]
RP 1-3051
RA Kim M.K., Seo J.K., Kwak H.R., Kim J.S., Kim K.H., Cha B.J., Choi H.S.;
RT "Molecular population genetics of Cucumber mosaic virus infecting pepper in
RT Korea based on analyses of complete genome sequences";
RL Unpublished.
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RN [2]
RP 1-3051
RA Kim M.K., Seo J.K., Kwak H.R., Kim J.S., Kim K.H., Cha B.J., Choi H.S.;
RT ;
RL Submitted (20-JAN-2013) to the INSDC.
RL Crop Life Safety, Crop Protection Division, National Academy of
RL Agricultural Science, 150 Suin-Ro, Gwonseon-Gu, Suwon, Gyeonggi 441-707,
RL Republic of Korea
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FH Key Location/Qualifiers
FH
FT source 1. .3051
FT /organism="Cucumber mosaic virus"
FT /segment="RNA2"
FT /host="Capsicum annuum L. (pepper)"
FT /isolate="RP2"
FT /mol_type="genomic RNA"
FT /country="South Korea"
FT /collection_date="2007"
FT /db_xref="taxon:12305"
FT CDS 86. .2659
FT /codon_start=1
FT /product="2a protein"
FT /protein_id="AGN55935.1"
FT /translation="MAFPAPTFSLANLLNGSYGVDTPEDVERLRSEQREEAAAACRNYR
FT PLPAVDVSESVTEDAHSLRTPDGAPAEAVSDEFVTYGAEDYLEKSDDELLVAFETMVKP
FT MRIGQLWCPAFNKCSFISSIAMARALLLAPRTSHRTMKCFEDLVAAIYTKSDFYYGEEC
FT EADDVQIDISSRDVPGYSFEPWSRTSGFEPPPICEACDMIMYQCPCFDFNALKKSCAER
FT TFADDYVIEGLDGVVDNATLLSNLGPFLVPVKCQYEKCPTPTLATPPDLNRATDRVDIN
FT LVQSICDSTLPTHSNYDDSFHQVFVESADYSIDLDHVRLRQSDLIAKIPDSGHMIPVLN
FT TGSGHKRVGTTKEVLTAIKKRNADVPELGDSVNLSRLSKAVAERFFISYINGNSLASSN
FT FVNVVSNFHDYMEKWKSSGLSYDDLPDLHAENLQFYDHMIKSDVKPVVSDTLNIDRPVP
FT ATITYHKKSITSQFSPLFTALFERFQRCLRERIILPVGKISSLEMAGFDVKNKHCLEID
FT LSKFDKSQGEFHLLIQEHILNGLGCPAPITKWWCDFHRFSYIRDRRAGVGMPISFQRRT
FT GDAFTYFGNTIVTMAEFAWCYDTDQFEKLLFSGDDSLGFSLLPPVGDPSKFTTLFNMEA
FT KVMEPAVPYICSKFLLSDEFGNTFSVPDPLREVQRLGTKKIPYSDNDEFLFAHFMSFVD
FT RLKFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYKELYYSDRRQC
FT ELINSFCSTEFRVERINSNKQRKKYGIERRCNDKRRTPTGSYGGGEEAETKVSQAESTG
FT TRSQKSQRESAFKSQTVPLPTVLSSRWFGTDRDVPPRERGGIVRV"
FT CDS 2418. .2753
FT /codon_start=1
FT /product="2b protein"
FT /protein_id="AGN55936.1"
FT /translation="MELNVGAMTNVELQLARMVEAKKRRRRSHKQNRRERGHKSPSERA
FT RSNLRLFRFLPFYQVDGSELIEMYRHVNVAELSESEAPCFTLPAEDDHDFDDTDWFAGN
FT EWAEGAF"
XX
SQ Sequence 3051 BP; 765 A; 680 C; 714 G; 892 T; 0 other;
kc527686 Length: 3051 13-JUN-2013 Type: N Check: 682 ..
1 gtttatttac aagagcgtac ggttcaaccc ctgcctcccc tgtaaaactc
51 cctagacttt aaaacttctt tctagtatct ttcttatggc tttccctgcc
101 cccacattct cactagccaa tcttttgaac ggtagttacg gtgtcgacac
151 tcccgaggat gtggaacgtt tgcgatctga gcaacgtgaa gaggctgctg
201 cggcctgtcg taattacagg cccctacccg ctgtggatgt cagcgagagt
251 gtcacagagg atgcgcattc cctccgaact cctgacggag ctcccgctga
301 ggcggtgtct gatgagtttg taacttatgg tgctgaagat taccttgaaa
351 aatctgatga tgagctcctt gtcgcttttg agacgatggt caaacccatg
401 cgtatcggac aactatggtg ccccgcgttt aataaatgtt cttttatttc
451 cagcattgct atggccagag ctttgttgtt ggcacctaga acatcccacc
501 gaaccatgaa gtgttttgaa gacctggtcg cggctattta cactaaatcc
551 gatttctatt acggtgaaga gtgtgaagcc gacgacgttc agatagatat
601 ctcgtctcgc gatgtacccg gttattcttt cgaaccgtgg tcccgaacgt
651 ctggatttga accgccgcct atttgtgaag cgtgcgacat gatcatgtac
701 cagtgcccgt gttttgattt caatgcttta aagaaatcgt gcgctgagag
751 gactttcgct gatgattatg ttattgaagg tttagatggt gttgttgata
801 acgcgactct gttgtcgaat ttgggtccat tcttggtgcc cgtgaaatgt
851 caatatgaaa aatgtccaac accgaccctc gcgactcctc cggatttaaa
901 ccgtgctact gatcgtgttg atattaactt ggttcaatcc atttgtgact
951 cgactctgcc cactcatagt aattacgacg actcttttca tcaagtgttc
1001 gtcgaaagtg cagattactc catagatctg gatcacgtta gacttcggca
1051 gtctgatctt atcgcaaaaa ttccagattc agggcatatg ataccggttc
1101 tgaataccgg gagcggtcac aagagagtag gtacaacgaa ggaggtcctt
1151 acagcaatta agaaacgtaa tgctgacgtt ccagagctag gtgattccgt
1201 taatctgtct agattgagta aggctgtggc tgagagattc ttcatttcat
1251 acatcaatgg taactctcta gcatccagta attttgtcaa tgtcgttagt
1301 aatttccacg attacatgga aaagtggaag tcctcaggtc tttcttacga
1351 tgatcttcca gatcttcatg ctgagaattt acagttttat gatcacatga
1401 taaaatctga tgtgaaacct gtggtgagcg acacactcaa tatcgacaga
1451 ccggttccag ctactataac gtatcataag aagagtataa cctcccagtt
1501 ctcaccgtta ttcacagcgc tattcgagcg cttccagaga tgccttcgag
1551 aacgtattat tcttcctgtt ggtaagattt catcccttga gatggcagga
1601 tttgatgtca aaaacaagca ctgcctcgag attgatctgt ctaagtttga
1651 taagtctcag ggtgaatttc atttgctaat tcaggaacat attttgaatg
1701 gtctaggatg tccagctccg ataaccaagt ggtggtgtga tttccaccga
1751 ttctcttaca ttagagaccg tagagctggt gttggtatgc ccatcagttt
1801 ccagagacga actggtgatg cgttcactta ttttggcaat accatcgtta
1851 ccatggctga gtttgcctgg tgttatgata ccgaccaatt cgaaaagctt
1901 ttattctcag gcgatgactc tcttggattt tcattgcttc cccctgttgg
1951 tgacccgagt aaattcacaa ctcttttcaa catggaagct aaggtgatgg
2001 aacccgcagt accatatatt tgttcgaagt tcttactctc tgacgagttc
2051 ggtaatacat tttccgttcc agatccattg cgcgaggttc agcggttagg
2101 aacaaagaaa attccctatt ctgacaatga tgaattcttg ttcgctcact
2151 tcatgagctt cgttgatcga ttgaagtttt tggaccgaat gtctcagtcg
2201 tgtatcgatc aactttcgat tttctttgaa ttgaaataca agaagtctgg
2251 ggaagaggct gctttaatgt taggcgcctt taagaagtac accgctaatt
2301 tccagtccta caaagaactc tattattcag atcgtcgtca gtgcgaattg
2351 atcaattcgt tttgtagtac agagttcagg gttgagcgta taaattccaa
2401 taaacagcga aagaaatatg gaattgaacg taggtgcaat gacaaacgtc
2451 gaactccaac tggctcgtat ggtggaggcg aagaagcgga gacgaaggtc
2501 tcacaagcag aatcgacggg aacgaggtca caaaagtccc agcgagagag
2551 cgcgttcaaa tctcagactg ttccgcttcc taccgttcta tcaagtagat
2601 ggttcggaac tgatagagat gtaccgccac gtgaacgtgg cggaattgtc
2651 cgagtctgag gctccttgtt ttacgttacc agcggaagat gaccatgatt
2701 ttgacgatac agattggttc gctggtaacg agtgggcgga aggtgcgttc
2751 tgaacccctc cttcctttct ccctccagtt ttctgaggcg ggagctgagt
2801 tggcagtatt gctacaaact gtctgaagtc actaaacgtt ttacggtgaa
2851 cgggttgtcc atccagctaa cggctaaaat ggtcagtcgc ggagaaatct
2901 acgccggaga cttacaagtc tctgaggcac ctttgaaacc atctcctagg
2951 tttcttcgga aggacttcgg tccgtgtact tctagcacaa gatgctagtt
3001 tagggtacgg gtgtcccccc ccgcttcggg ggggcttcct gaaggagacc
3051 a