Sequence of DPV Cucumber mosaic virus
Cucumber mosaic virus isolate RP13 segment RNA2, complete sequence.
ACC No: KC527697
Dated: 2013-06-13 | Length: 3047 | CRC: 979147672
ID KC527697; SV 1; linear; genomic RNA; STD; VRL; 3047 BP.
XX
AC KC527697;
XX
DT 13-JUN-2013 (Rel. 117, Created)
DT 13-JUN-2013 (Rel. 117, Last updated, Version 1)
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DE Cucumber mosaic virus isolate RP13 segment RNA2, complete sequence.
XX
KW .
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OS Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Bromoviridae;
OC Cucumovirus.
XX
RN [1]
RP 1-3047
RA Kim M.K., Seo J.K., Kwak H.R., Kim J.S., Kim K.H., Cha B.J., Choi H.S.;
RT "Molecular population genetics of Cucumber mosaic virus infecting pepper in
RT Korea based on analyses of complete genome sequences";
RL Unpublished.
XX
RN [2]
RP 1-3047
RA Kim M.K., Seo J.K., Kwak H.R., Kim J.S., Kim K.H., Cha B.J., Choi H.S.;
RT ;
RL Submitted (20-JAN-2013) to the INSDC.
RL Crop Life Safety, Crop Protection Division, National Academy of
RL Agricultural Science, 150 Suin-Ro, Gwonseon-Gu, Suwon, Gyeonggi 441-707,
RL Republic of Korea
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FH Key Location/Qualifiers
FH
FT source 1. .3047
FT /organism="Cucumber mosaic virus"
FT /segment="RNA2"
FT /host="Capsicum annuum L. (pepper)"
FT /isolate="RP13"
FT /mol_type="genomic RNA"
FT /country="South Korea"
FT /collection_date="2007"
FT /db_xref="taxon:12305"
FT CDS 79. .2655
FT /codon_start=1
FT /product="2a protein"
FT /protein_id="AGN55957.1"
FT /translation="MASPAPAFSLANLLNGTYGVDTPEEVERVRFEQREEAAAACRNYK
FT PLPAVDVSESVTEDAHSLRIPDGAPSEEVSVEFVTYGAEDYLEKSDDELLVAFETMVKP
FT MRIGQLWCPAFNKCLFISSIAMARALLMVPSTSNRTMKCFEDLVAAIYTKSDFYYDDEC
FT EADDVQINISSRDVPGYSFEPWSRTSGFEPPPICEACDMIMYQCPCFDFNALKKSCAER
FT TFADDYVIEGLDGVVDNATLLSNLGPFLVPVKCQYEKCPTPTVANPPSLNRATDRVDIN
FT LVQSICDSTLPTHSNYDDSFHQVFVESADYSIDLDHVRLRQSDLIAKIPDSGHMIPVLN
FT TGSGHKRVGTTKEVLTAIKKRNADVPELGDSVNLSRLSKAVAERFFISYINGNSLATSN
FT FINVVSNFHDYMEKWKSSGLSYDDLPDLHAENLQFYDHMIKSDVKPVVSDTLNIDRPVP
FT ATITYHKKGITSQFSPLFTALFERFQRCLRERIILPVGKISSLEMSGFDVKNKHCLEID
FT LSKFDKSQGEFHLMIQEHILNGLGCPAPITKWWCDFHRFSYIRDRRAGVGMPISFQRRT
FT GDAFTYFGNTIVTMAEFAWCYDTDQFEKLLFSGDDSLGFSVLPPVGDPSKFTTLFNMEA
FT KVMEPAVPYICSKFLLSDEFGNTFSVPDPLREVQRLGTKKIPYSDNDEFLFAHFMSFVD
FT RLKFLDRMTQSCIDQLSLFFELKYKKSGAEAALMLGAFKKYTANFQSYKELYYSDRRQC
FT ELINSFSCVELRIERSSFIKQRKKKDGIERRRNDKRRTPTGPHGGGEETETKVSQEEST
FT GTMSQKSQREGAFKSQTIPLPTVLSSRWFGTDRDVPPRDRGGIVRV"
FT CDS 2414. .2749
FT /codon_start=1
FT /product="2b protein"
FT /protein_id="AGN55958.1"
FT /translation="MELNEGAMTNVELQLARMVEAKRQRRRSHKKNRRERCHKSPSERA
FT RSNLRLFRFLPFYQVDGSELIEMYRHVIVAELSESEAPCFTLPAEDDHDFDDTDWFAGN
FT EWAEGAF"
XX
SQ Sequence 3047 BP; 768 A; 672 C; 716 G; 891 T; 0 other;
kc527697 Length: 3047 13-JUN-2013 Type: N Check: 2296 ..
1 gtttatttac aagagcgtac ggttcaaccc ctgcctcccc tgtaaaactc
51 cctagacttt ctagtttctt tcttttctat ggcttcccct gcccccgctt
101 tctcactggc caatcttttg aatggtactt acggtgtaga cactcccgag
151 gaagtggaac gtgtgcgatt tgagcaacgc gaagaggctg ctgcggcttg
201 tcgtaattac aagcccctac ccgctgtgga tgtcagcgag agtgtcacag
251 aggatgcgca ttccctccga attccagacg gagctccctc tgaagaggtg
301 tctgttgaat ttgttactta tggtgctgaa gattaccttg aaaaatctga
351 tgatgagctc cttgtcgctt ttgagacgat ggtcaaaccc atgcgtatcg
401 gacagttatg gtgccctgcg tttaataaat gtttatttat ttccagcata
451 gctatggcta gagctttgct tatggtacct agcacatcta accgaaccat
501 gaagtgtttt gaagacctgg tcgcggccat ttacactaaa tccgacttct
551 attacgatga tgagtgtgaa gccgatgatg ttcagataaa tatctcgtct
601 cgcgatgtac ccggttattc tttcgaaccg tggtcccgaa cgtctggatt
651 tgaaccaccg cctatctgtg aggcgtgtga catgatcatg taccagtgcc
701 catgctttga cttcaatgct ttaaagaaat cgtgcgctga gaggactttc
751 gctgatgatt atgttattga aggtttagat ggtgttgttg acaacgcaac
801 tttgttgtct aatttaggcc cgttcttggt gcctgtgaag tgtcagtacg
851 agaaatgtcc aacacccacc gtcgcgaatc ctccgagctt aaatcgtgct
901 actgatcgtg ttgatattaa tttagttcaa tccatttgtg attccactct
951 gcccacgcat agcaattatg acgactcttt tcatcaagtg ttcgtcgaaa
1001 gtgcagatta ttccattgat ctggatcatg ttagacttcg acaatctgat
1051 ctcattgcga agatcccaga ttcagggcat atgataccgg ttttgaatac
1101 cgggagtggt cacaagagag taggtacaac gaaggaggtc cttacagcaa
1151 tcaagaaacg taatgctgac gttccagagc taggtgattc cgttaatctg
1201 tccaggttga gtaaggctgt ggctgagaga ttcttcatct cgtacatcaa
1251 tggtaactct ttagccacca gcaactttat taatgtcgtt agtaacttcc
1301 acgattacat ggaaaagtgg aagtcttcag gcctctcgta tgatgatctc
1351 ccagatcttc atgctgagaa tttgcagttt tacgaccaca tgataaaatc
1401 tgatgtgaag cctgttgtta gcgacacatt gaacatcgac agaccggttc
1451 cagctactat aacgtatcat aagaagggta taacctccca gttctcaccg
1501 ttattcacag ctctatttga gcgtttccag agatgccttc gagaacgtat
1551 tattcttcct gttggaaaga tttcatccct tgagatgtca ggatttgatg
1601 ttaagaacaa acattgtctt gagatcgact tgtccaaatt cgataagtct
1651 caaggtgaat ttcatttgat gattcaggaa cacattttga atggtctagg
1701 gtgcccggct ccgataacaa agtggtggtg tgacttccac cgattttctt
1751 acattagaga tcgtagagct ggtgttggca tgcctatcag tttccagaga
1801 cgaactggtg atgccttcac ttattttggt aacaccattg tcaccatggc
1851 tgaatttgca tggtgttacg acaccgacca attcgaaaag cttttattct
1901 caggcgatga ttctctagga ttttctgtgc ttccccctgt tggtgatccg
1951 agtaaattca cgactctttt caacatggaa gctaaggtga tggagccagc
2001 agtaccatat atttgttcga agttcttact ctctgacgag ttcggtaata
2051 ctttttccgt tccagatcca ttgcgcgagg ttcagcggtt aggaacaaag
2101 aaaatcccct attctgacaa tgatgaattc ttgtttgctc acttcatgag
2151 ctttgttgat cgattgaagt ttttggaccg aatgactcag tcttgtatcg
2201 atcagctttc actcttcttc gagttgaaat acaagaagtc tggggcagag
2251 gccgctctaa tgttaggcgc ctttaagaaa tataccgcta attttcagtc
2301 ctacaaagaa ctctattatt cagatcgtcg tcagtgcgaa ttgatcaatt
2351 cgtttagttg tgtagagttg aggattgagc gttcgagttt cattaagcag
2401 cgaaagaaga aagatggaat tgaacgaagg cgcaatgaca aacgtcgaac
2451 tccaactggc ccgcatggtg gaggcgaaga gacagagacg aaggtctcac
2501 aagaagaatc gacgggaacg atgtcacaaa agtcccagcg agagggcgcg
2551 ttcaaatctc agactattcc gcttcctacc gttttatcaa gtagatggtt
2601 cggaactgat agagatgtac cgccacgtga tcgtggcgga attgtccgag
2651 tctgaggccc cttgttttac gttgccagcg gaagatgacc atgatttcga
2701 cgatacagat tggttcgctg gtaacgagtg ggcggaaggg gcattctgaa
2751 aaaacccccc ttcctttctc cctccagttt tctgaggcgg gagctgagtt
2801 ggcagtattg ctataaactg tctgaggtca ctaaacgttt tacggtgaac
2851 gggttgtcca tccagctaac ggctaaaatg gtcagtcgtg gagaaatcca
2901 cgccggagac ttacaagtct ctgaggtgcc tttgaaacca tctcctaggt
2951 ttcttcggaa ggacttcggt ccgtgtaccg ctagtacaag ggctagcttc
3001 agggtacggg catcccccca tttaatgggg gcctcaaaag gagacca