Sequence of DPV Cucumber mosaic virus

Cucumber mosaic virus isolate RP44 segment RNA3, complete sequence.

ACC No: KC527768

Dated: 2013-06-13 | Length: 2211 | CRC: 828596679

                
ID   KC527768; SV 1; linear; genomic RNA; STD; VRL; 2211 BP.
XX
AC   KC527768;
XX
DT   13-JUN-2013 (Rel. 117, Created)
DT   13-JUN-2013 (Rel. 117, Last updated, Version 1)
XX
DE   Cucumber mosaic virus isolate RP44 segment RNA3, complete sequence.
XX
KW   .
XX
OS   Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Bromoviridae;
OC   Cucumovirus.
XX
RN   [1]
RP   1-2211
RA   Kim M.K., Seo J.K., Kwak H.R., Kim J.S., Kim K.H., Cha B.J., Choi H.S.;
RT   "Molecular population genetics of Cucumber mosaic virus infecting pepper in
RT   Korea based on analyses of complete genome sequences";
RL   Unpublished.
XX
RN   [2]
RP   1-2211
RA   Kim M.K., Seo J.K., Kwak H.R., Kim J.S., Kim K.H., Cha B.J., Choi H.S.;
RT   ;
RL   Submitted (20-JAN-2013) to the INSDC.
RL   Crop Life Safety, Crop Protection Division, National Academy of
RL   Agricultural Science, 150 Suin-Ro, Gwonseon-Gu, Suwon, Gyeonggi 441-707,
RL   Republic of Korea
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2211
FT                   /organism="Cucumber mosaic virus"
FT                   /segment="RNA3"
FT                   /host="Capsicum annuum L. (pepper)"
FT                   /isolate="RP44"
FT                   /mol_type="genomic RNA"
FT                   /country="South Korea"
FT                   /collection_date="2007"
FT                   /db_xref="taxon:12305"
FT   CDS             120. .959
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /note="3a; MP"
FT                   /protein_id="AGN56099.1"
FT                   /translation="MAFQGTSRTLTQQSSAATSDELQKILFSPEAIKKMAAECDLGRHH
FT                   WMRADNAISVRPLVPEVTHGRIVSFFKSGYDAGELCSKGYMSVPQVLCAVTRTVSTDAE
FT                   GSLRIYLADLGDKELSPIDKQCVTLHNHDLPALVSFQPTYDCPMETVGNRKRCFAVVIE
FT                   RHGYVGYTGTTASVCSNWQARFSSKNNNYTHIAAGKTLVLPFNRLAEQTKPSAVARLLK
FT                   SQLNNIEASQYVLTDSKINQNARSESEELNVESPPAAIGSSSASRFETFRPQVVNGL"
FT   CDS             1255. .1911
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="CP"
FT                   /protein_id="AGN56100.1"
FT                   /translation="MDKSESTSAGRNRRRRPRRGSRSASSSADANFRVLSQQLSRLNKT
FT                   LATGRPTINHPTFVGSERCKPGYTFTSITLKPPKIDKGSYYGRRLVLPDSVTEFDKKLV
FT                   SRIQIRVNPLPKFDSTVWVTVRKVPASSDLSVTAISAMFADGASPVLVYQYAASGVQAN
FT                   NKLLYDLSAMRADIGDMRKYAVLVYSKDDALETDELVLHVDIEHQRIPTSGVLPV"
XX
SQ   Sequence 2211 BP; 517 A; 514 C; 532 G; 648 T; 0 other;

kc527768 Length: 2211  13-JUN-2013  Type: N  Check: 5034  ..

       1  gtaatcttac cactgtgtgt gtgcgtgtgt gtgtgtcgcg tcgtgtcgtg
      51  tcgtgttgtc cgcacatttg agtcgtgctg tccgcacctt ttctttcagt
     101  gtgttagaat acccgaggca tggctttcca aggtaccagc aggactttaa
     151  ctcaacagtc ctcagcggct acgtctgacg aacttcaaaa gatattattt
     201  agccctgaag ccattaagaa aatggctgct gagtgtgacc taggccggca
     251  tcattggatg cgagctgata atgctatttc agtccggccc ctcgttcccg
     301  aagtaaccca cggtcgcatt gtttctttct ttaagtctgg gtatgatgct
     351  ggtgaattgt gctctaaagg atacatgagc gtccctcaag tgttgtgtgc
     401  tgttactcga acagtttcca ctgatgctga agggtctctg agaatttacc
     451  tagctgactt aggcgacaag gaattatctc ccatagataa gcaatgtgtc
     501  acattacata accatgatct ccccgcttta gtgtctttcc aaccgacgta
     551  tgattgtcct atggagacag ttgggaatcg gaagcggtgt tttgctgtcg
     601  ttattgagag acatggttac gttgggtata ccggcaccac agctagcgtg
     651  tgtagtaatt ggcaagcacg gttttcttct aagaataaca actacactca
     701  tatcgcagct gggaagactc tagtactgcc cttcaataga ttagctgagc
     751  aaacgaaacc gtcagccgtc gctcgcctat tgaagtcgca attgaataac
     801  atagaagctt cgcaatacgt tttgacggat tcgaagatca atcagaatgc
     851  gcgcagtgag tccgaggaat taaatgttga gagccctccc gccgcaatcg
     901  ggagttcttc cgcgtcccgc ttcgaaacct tcagaccgca ggtggttaac
     951  ggtctttaga ttttcgtcgc gtattagtat ataagtatgt gtgagtctgt
    1001  acataatact atatctatag tgtcctgtgt gagttgatac agtagacaac
    1051  tgtgacgcga tgtcgtgttg agaagggaac acatctggtt ctagtaagcc
    1101  acatcattag ttttgaggtt caattcctct tactccctgt tgtgcccctt
    1151  actttttcat ggatgcttct ccacgaaatt gcgtttcgtc tactagatca
    1201  aggagtgttt gtgttgtgat tttctctttg tgttgtagat atttgagtcg
    1251  agtcatggac aaatctgaat caaccagtgc tggtcgtaac cgtcggcgtc
    1301  gtccgcgtcg tggttcccgc tccgcctcct cctccgcgga tgctaacttt
    1351  agagtcttgt cgcagcaact ttcgcgactt aacaagacgt tagcaactgg
    1401  tcgtccaact attaaccacc caaccttcgt gggtagtgag cgttgtaaac
    1451  ctggatacac gttcacttcg attaccttga agccaccgaa aatagacaaa
    1501  gggtcttatt atggtagaag gttggttctt cctgattcag tcacagagtt
    1551  cgataagaag cttgtttcgc gtattcaaat tcgagttaat cctttgccga
    1601  aatttgattc taccgtgtgg gtgacagtcc gtaaagttcc tgcctcctcg
    1651  gacttatccg ttaccgccat ctctgctatg ttcgcggacg gagcctcacc
    1701  ggtactggtt tatcagtatg cagcatctgg agtccaagcc aacaataaat
    1751  tgttgtatga tctttcggcg atgcgcgctg atattggtga catgagaaag
    1801  tacgccgtgc tcgtgtattc aaaagacgat gcgctcgaga cggacgaatt
    1851  ggtacttcat gtcgacattg agcaccaacg cattcccaca tctggggtgc
    1901  tcccagtttg aacctgtgtt ttccagaacc ctccctccga tttctgtggc
    1951  gggagctgag ttggtagtgt tgctataaac tacctgaagt cactaaacgc
    2001  tatgcggtga acgggttgtc catccagctt acggctaaaa tggtcagtcg
    2051  tggagaaatc cacgccagta gacttacaag tctctgaggt gcctttgaaa
    2101  ccatctccta ggtttcttcg gaaggacttc ggtccgtgta cttctagcac
    2151  aagatgctag tttagagtac gggcatcccc cattttaaat ggggtctctc
    2201  aaaggagacc a