Sequence of DPV Actinidia virus X
Actinidia virus X isolate L5 RNA dependent RNA polymerase gene, partial cds; and triple gene block protein 1, triple gene block 2, triple gene block protein 3, and coat protein genes, complete cds.
ACC No: KC568202
Dated: 2013-06-27 | Length: 6851 | CRC: 666176199
ID KC568202; SV 1; linear; genomic RNA; STD; VRL; 6851 BP.
XX
AC KC568202;
XX
DT 27-JUN-2013 (Rel. 117, Created)
DT 27-JUN-2013 (Rel. 117, Last updated, Version 1)
XX
DE Actinidia virus X isolate L5 RNA dependent RNA polymerase gene, partial
DE cds; and triple gene block protein 1, triple gene block 2, triple gene
DE block protein 3, and coat protein genes, complete cds.
XX
KW .
XX
OS Actinidia virus X
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales;
OC Alphaflexiviridae; Potexvirus; unclassified Potexvirus.
XX
RN [1]
RP 1-6851
RA Blouin A.G., Cohen D., Chavan R.R., Pearson M.N., MacDiarmid R.M.;
RT "A novel potexvirus isolated from Actinidia";
RL Unpublished.
XX
RN [2]
RP 1-6851
RA Blouin A.G., Cohen D., Chavan R.R., Pearson M.N., MacDiarmid R.M.;
RT "Viruses of kiwifruit (Actinidia species)";
RL Unpublished.
XX
RN [3]
RP 1-6851
RA Blouin A.G., Cohen D., Chavan R.R., Pearson M.N., MacDiarmid R.M.;
RT ;
RL Submitted (31-JAN-2013) to the INSDC.
RL Bioprotection, The New Zealand Institute for Plant & Food Research Limited,
RL 120 Mt Albert Road, Sandringham, Auckland 1025, New Zealand
XX
CC ##Assembly-Data-START##
CC Assembly Method :: Geneious Pro v. 5.6.5
CC Sequencing Technology :: Sanger dideoxy sequencing; Solexa sRNA
CC ##Assembly-Data-END##
XX
FH Key Location/Qualifiers
FH
FT source 1. .6851
FT /organism="Actinidia virus X"
FT /host="Actinidia chinensis 'Hort16A'"
FT /lab_host="Nicotiana occidentalis"
FT /isolate="L5"
FT /mol_type="genomic RNA"
FT /country="New Zealand"
FT /collection_date="2005"
FT /db_xref="taxon:1331744"
FT CDS <1. .4825
FT /codon_start=2
FT /product="RNA dependent RNA polymerase"
FT /protein_id="AGO03686.1"
FT /translation="LSEAAYTHMRPVLKEALVNCPYALTDAEADSLENLGITINPSATQ
FT THTHAACKAIENRMLEIVGSHLPKEACTMLFLKRSKLRYMRRAAALKDTFVNKDVEPKD
FT LFRYDSDTIRSKLQGIEHRIAYISDTLHFMSRQELVQLFVDSPNLETLLATVVLPVEAL
FT HRRTTLYPTLYSVNYSPKGFEYIPGNHGGGAYFHPYSTLEWLKVRQIHAYDYYALDPQI
FT TLTFQMVESLGANHLFIIRRADMKTPAMRTFCRDSLVTLPKVFCPDSMNANRPLEKKRA
FT MQLMLYCKSVKQVTERDALWRERAMQLMLYCKSVKQVTERDIYAKIRQLIPTQELELYE
FT PDEIVHLANYFYFMAHLDSITCFEDMLSNNVWRRLTLPIRTNFRQLVEFFKGKSDFDKL
FT LQALKWETFTYSLEPEDYAEKFSSHRAREFAEMTDTTVGKAAETLRYVARHPELVQPED
FT FASQPIPDPLENCSHYIQIDPATPKLEVENSPVSPRADAPPPVNQAPPQSLATRPCTGT
FT PSTHNSDWQVATIEYLMEQAGGTTSDGRTRVIFHKSTPAAHTLGTTPTTADWPEMLDDI
FT AISLPAQPDVCIIEAFHTSRPGRLLPDIPLWAAQQSTVLCFGDLTWSFPCPHEIRTKNG
FT DHFTLVDTHLGPHAPTIENCGLRSIVAHFITMGTNLPQTDTPTVWYTTGSDEASTSHPP
FT PPTNAPTPAPALHRTVNNNVAPADQSRSVPWVSRVPLLKNHGLDGDQEQLQHDGQIILP
FT IQDVHKLPHAAYPREVPHAIQDTMNNIKRYPVAIKLDKHRASSYASDIKNNRTGRLLLQ
FT MDQKWKASFANKMQHEDQEVVALHPRGAHEVVGTVIHGCAGSGKSYSVQKWMRTLKEDQ
FT NVITVVTPTVLLRNDWHTKLPILTADTFKTFEKAIVQPCNPIVVFDDYTKLPPGMIEAM
FT VMHHXNISFIILTGDSRQSTYHELNDEAYISALPEAVEVFAPYCEFYLNATHRNVRDLA
FT NKLGVYSERPGKCKINFTSCHLKASKIPILVPSTFKKNAMAEMGHNSMTYAGCQGLTAA
FT KVQIVLDNHTSQCSERVIYTCLSRAVDGIHFINTGPTSGDYWEKLGSTPYLKAFIDSYR
FT DERTEVYNSQPADDSPTEPDAPLTHFPMAPKPLLEPLVAELPVKEDREIYSATHGFSNA
FT IQTEDGVVQLFQHQQAKDETLYWATIETRLAISTPEANLREFNLKKDVGDILFLNYAKL
FT MGLPAEPVPFEERLWEISAAEVRNTYLSKAVGNLVNAAARQSPDFPINRISLFLKSQWV
FT KKVEKLGAIKVKPGQTIAAFMQETVMLYGTMARYLRKMRQRFQPDNIFINCETTPEDLD
FT RFIKTKWNFKRPAHTNDFTAFDQSHDGAMLQFEVIKAKFFNVPPEIIEGYIFIKLNAAI
FT FLGTLGIMRLSGEGPTFDANTECSIAYNATRFHIQPDTAQVYAGDDMALDRISIEKATF
FT YTLEKQLKLTSKPLFPTQTKGDYAEFCGWVLTPDGLIKQPLKMHASIMLQKKIQNISQS
FT ARSYALDLRYAYKMGDTLQEHLTEDEANYHQDSVRQMHLLHQQDVLARGSASPPRETGQ
FT EGTSTRTQRRNQTKRRAKVRVATIEEAA"
FT CDS 4878. .5585
FT /codon_start=1
FT /product="triple gene block protein 1"
FT /protein_id="AGO03687.1"
FT /translation="MELEYLVNLLDFYGFSRTSRSFSLPLVVHGVAGCGKSTIISKVSC
FT AYPKLISASFSPQLIDPDSGRRQSAVDGSAVDLLDEYLAGSNPTVRLAKFCDPLQYDCQ
FT SPEEPHYRALHSHRFCPATAQLLNKIFGCHITSKLTISATIRFADAFAEDPEGQVITFE
FT PELESLLTAHGCPTTPVADLWGRNIPYVSVYTSSINYALENYRSSLFLALTRHQKQLLI
FT FDLDARANTPHEL"
FT CDS 5554. .5916
FT /codon_start=1
FT /product="triple gene block 2"
FT /protein_id="AGO03688.1"
FT /translation="MPGLTPPTNFEQVWKIAAIGLLTCGSIYALRANHQPHVGDNLHAL
FT PHGGLYRDGTKQITYCSPQKTHAYNHKWTAAAAIAILSLLIFAQSRFAFSNRPDPVRVC
FT RHCPQAGADVHGHNHG"
FT CDS 5753. .6022
FT /codon_start=1
FT /product="triple gene block protein 3"
FT /protein_id="AGO03689.1"
FT /translation="MPTTTSGQQQQPSPFFLFLSSHKVDLLLATVLILFVYAVTAPKQA
FT PTCTVIITGEAIKVIGCPDPGSVFTNLNIAPWNGVKFPILDFEN"
FT CDS 6041. .6784
FT /codon_start=1
FT /product="coat protein"
FT /protein_id="AGO03690.1"
FT /translation="MTDPSKNVSGGPTNPPPKVAAGATPPQGKTPEPTPADTSDPTRGP
FT SLSQLRQVKYVSATTSVATPEEIKLLGSLYERMGIDKNDVAPAMWDLARAYADVQSSQS
FT AVLVGTTPSNPAITRQALSRQVLTINVTPRQFCSYFAKVVWNMCIDSGIAPANWVKMGL
FT QEPERFAGFDFFEAVLSPAALEPEGGLVRQPTMREIQAHALTKAGALARQKIQNGNYIS
FT NLAEVTRGRVGGVNTMYAIEEPPEL"
XX
SQ Sequence 6851 BP; 1830 A; 2059 C; 1515 G; 1446 T; 1 other;
kc568202 Length: 6851 27-JUN-2013 Type: N Check: 3753 ..
1 actctctgag gcagcataca cccatatgcg tcccgtccta aaagaagctt
51 tggttaactg cccttacgca cttaccgacg cggaagcaga tagtttagaa
101 aacctgggta ttaccatcaa ccccagcgcc acgcagaccc atacccacgc
151 cgcctgtaaa gctatagaga accgtatgct agaaatagta ggcagccacc
201 tacccaaaga agcatgcacc atgttgtttc taaagaggtc taaactaagg
251 tatatgcgcc gggcagccgc tctgaaagac actttcgtca ataaagacgt
301 cgagcctaaa gaccttttca gatatgatag tgacaccatt cgtagcaagc
351 ttcaaggtat agagcatagg atagcgtaca tttcagacac cctacatttt
401 atgtctaggc aggaactagt tcagcttttt gttgattctc caaatttaga
451 aaccctatta gccacagtag tacttcccgt agaagcactc caccgtagga
501 ccaccctcta ccccaccctt tactctgtta attacagccc aaagggtttt
551 gagtacatac ccggcaacca tggcggcgga gcctacttcc atccgtactc
601 cactctggag tggctaaaag tgcgtcagat acacgcttat gattactacg
651 cacttgatcc gcaaatcaca cttaccttcc agatggtcga gagtttgggc
701 gctaaccacc tgttcattat ccgcagggct gacatgaaga cacctgccat
751 gcggaccttt tgccgtgact cactagtcac tctacccaag gttttctgcc
801 cagactcaat gaacgctaac cgccctctgg aaaagaaacg ggccatgcag
851 ttgatgctct actgcaagtc tgtgaagcag gttacggaaa gggatgccct
901 ctggagagag cgggccatgc agttgatgct ttactgcaag tcggtgaaac
951 aggtcacgga gagggacatt tacgctaaaa ttcgacaact catccccacc
1001 caagaacttg agttgtatga gcctgacgaa atagtgcacc ttgccaacta
1051 cttctatttt atggcccatc tcgactccat cacctgcttc gaagacatgt
1101 tgtccaacaa tgtctggaga cggctcacct tacccatccg caccaatttc
1151 cgccagctgg tggagttctt caagggtaag tccgacttcg acaagctgct
1201 gcaggcactc aagtgggaga ccttcaccta ctctctggag cctgaagatt
1251 acgcagagaa attctcaagt caccgcgcca gagagtttgc tgaaatgacc
1301 gacacgaccg tggggaaagc ggctgaaaca ctgcgctacg tcgcacgaca
1351 cccggagctc gtgcagcctg aggacttcgc cagccaaccc atacccgacc
1401 ccttagaaaa ctgctcccac tacatccaaa ttgacccagc cacacccaaa
1451 ctggaagtcg aaaacagccc cgtttcccct cgcgcagacg cccctccacc
1501 agtaaatcag gccccaccac aatcacttgc cactcgacct tgcaccggga
1551 ccccttccac acacaacagc gactggcagg tggccactat tgagtaccta
1601 atggagcagg ctggtggaac cacatccgat ggccgcacac gcgtcatatt
1651 ccataagtct acccctgccg ctcataccct aggtaccacc ccgaccaccg
1701 cggactggcc tgaaatgctg gacgacattg ctatctcact gccagctcag
1751 cctgatgtat gtatcattga ggcatttcac acttcaagac ctggccgact
1801 actcccagac atacccctct gggcggcaca gcaatccact gtcctctgct
1851 ttggtgatct aacttggtca ttcccttgcc cgcacgaaat ccgaaccaaa
1901 aacggggatc acttcacact cgtggacacg cacttgggac cccacgcccc
1951 tacgatcgaa aactgcgggc tccggagcat cgttgcgcac ttcatcacca
2001 tgggcacgaa cctcccacag acggacactc ccaccgtttg gtacacgact
2051 ggcagtgatg aagcatccac atcccaccca cctccgccca caaacgcacc
2101 aaccccagca cccgccctgc accgaactgt caacaacaat gtcgcaccgg
2151 cggatcaatc aaggtctgtg ccctgggttt cacgggttcc acttctgaag
2201 aaccatggtt tagacggaga ccaggagcag ctacagcatg acggacaaat
2251 cattttgccc atccaagacg tgcacaaact accccacgca gcttatccaa
2301 gggaggtgcc acacgctatt caagacacaa tgaacaacat caagaggtac
2351 cccgtcgcta tcaagttgga caaacataga gcatcatcct acgcctcgga
2401 catcaagaat aacaggactg ggagactctt gctacaaatg gaccagaagt
2451 ggaaagcgtc tttcgcgaac aagatgcagc atgaagatca agaagtggtt
2501 gcacttcatc cacggggcgc ccacgaggtt gttggtaccg tcatccatgg
2551 gtgcgccggc tcaggcaaat catactctgt gcagaagtgg atgaggacgt
2601 taaaagaaga ccagaatgtg attacagttg tcacgccaac agttttgcta
2651 agaaacgact ggcacactaa actgcccatc ttgacagctg acactttcaa
2701 aaccttcgag aaagccatcg tccagccttg caacccgatt gtggtttttg
2751 acgactacac caaactcccc ccaggcatga tagaggcgat ggttatgcac
2801 cacangaaca tcagcttcat cattttaact ggtgatagcc gtcagtccac
2851 ctaccatgaa ctgaacgatg aggcttacat ctcggcccta cctgaagctg
2901 tagaagtgtt cgcaccttac tgtgagttct acctcaacgc tactcaccgg
2951 aacgttcggg acttagccaa caaactgggc gtctattctg aaaggcctgg
3001 caagtgtaaa attaacttca catcctgcca cctcaaggcc tccaaaatcc
3051 ccatcctggt cccatctact tttaaaaaaa acgctatggc cgagatgggg
3101 cacaactcca tgacttatgc gggctgccaa ggactcacag cggcaaaagt
3151 ccaaattgtt ctcgacaatc acaccagcca atgctccgaa agagtcatat
3201 acacatgttt gtcgagggct gtggacggca ttcacttcat aaacaccggg
3251 cccacttcag gggattactg ggagaagctc ggctccacac cgtacctcaa
3301 agctttcatc gactcttaca gagacgagcg gacggaagtg tacaattcgc
3351 aaccagctga cgacagccct accgaacctg atgctccact cactcacttc
3401 ccaatggccc ctaaaccact cctcgagcct ctcgttgctg agctgccagt
3451 gaaagaagat agggaaatct actccgccac ccacgggttc tccaacgcga
3501 tccaaactga agatggagtg gtgcaactct tccaacacca gcaagccaaa
3551 gatgagacac tctactgggc cactatagag accaggctcg ccatatctac
3601 gcccgaagct aacctgcgtg agtttaacct caaaaaagat gtcggcgaca
3651 tcctcttcct caactacgcg aaactgatgg gccttcctgc tgaaccagtt
3701 ccctttgagg agagactttg ggaaatctcc gccgctgaag tccgcaacac
3751 ctacctgagc aaagcagtgg gcaacctggt caacgccgcc gcacgccaaa
3801 gcccagactt ccccatcaac cgaatatcgc tcttcctgaa gtcccagtgg
3851 gtgaagaaag tggagaaatt gggcgccatc aaggtcaaac caggacagac
3901 gatagcagcc ttcatgcagg aaactgtcat gctatacggc actatggcac
3951 gctatctacg caagatgagg caacggttcc aacctgacaa catcttcatc
4001 aattgtgaga caacacctga agacttggac cgcttcatca agactaagtg
4051 gaatttcaaa cgccctgctc acaccaacga cttcacggca tttgaccagt
4101 ctcacgacgg cgcgatgctg cagtttgaag tgatcaaagc caagtttttc
4151 aacgtcccgc cagagatcat tgaaggatac atattcatca agctgaacgc
4201 ggcaattttc ttggggaccc ttgggatcat gcgtctgtca ggagaggggc
4251 ccacatttga tgccaacact gaatgctcca tcgcctacaa cgccactaga
4301 ttccacatac agccagacac agcccaggtc tatgcgggag acgacatggc
4351 actggaccga atcagcattg agaaagctac attttacaca ctggaaaagc
4401 aactcaagct cacatccaag cccctcttcc caacccagac taaaggtgat
4451 tacgctgagt tttgcggctg ggtgctgact ccggacggtc tcattaagca
4501 gcctttgaag atgcatgcca gtatcatgct ccagaagaaa atccaaaaca
4551 tctcccagag tgcccgatca tacgcactgg accttaggta cgcctacaaa
4601 atgggagata cactccagga gcatttaact gaagatgaag ccaattacca
4651 ccaggattca gtgcgacaaa tgcatctcct gcaccagcaa gacgtcttgg
4701 cacgaggtag cgcttcaccc ccgagagaga ctggacaaga aggcaccagc
4751 acccgaacgc agagacgcaa tcaaacaaag agaagggcaa aggtgcgtgt
4801 agccaccatc gaggaagcgg cttaagcact ctacccggca actctctaat
4851 gccgggttaa gtttcctaga tagtgaaatg gaattagagt acttagttaa
4901 tttgttagac ttttacggtt tcagtagaac gtctaggtct ttctcactcc
4951 ctttagtagt acacggcgta gctggctgcg gcaagtctac catcataagt
5001 aaagtctcct gtgcctaccc caagctcatc tccgccagct tctcaccaca
5051 actcattgac ccagactccg ggcgccgtca aagtgctgtg gacggttcag
5101 cagtcgacct ccttgacgag tacttggctg gaagcaatcc cactgttcgc
5151 ctagcgaaat tttgcgaccc tctgcaatac gactgtcaga gccccgaaga
5201 gccacactat cgagcactac actcccacag gttctgcccg gccaccgcac
5251 agcttctcaa caaaattttc ggctgtcaca tcacttccaa gctgaccatc
5301 tcagctacca tacgattcgc cgacgcattt gctgaagatc cagagggcca
5351 ggttatcacg tttgaaccag agttagaaag cctcctcaca gcacacggct
5401 gccccaccac ccccgtggct gacctgtggg gacgtaacat accatacgtg
5451 agcgtttaca cctcatccat caactacgcg cttgaaaact accggagctc
5501 actattcctg gcactgacac gacaccagaa gcagttgctc atctttgatc
5551 tggatgccag ggctaacacc ccccacgaac tttgagcagg tgtggaagat
5601 cgcggctatt ggtctgctca cgtgtggctc catttacgcg ctacgggcca
5651 atcatcagcc ccacgttggt gacaacttac acgcactacc acacggaggc
5701 ctgtaccgag acggaaccaa gcagataaca tactgtagtc cacagaagac
5751 ccatgcctac aaccacaagt ggacagcagc agcagccatc gccattcttt
5801 ctcttcttat cttcgcacaa agtagatttg cttttagcaa ccgtcctgat
5851 cctgttcgtg tatgccgtca ctgcccccaa gcaggcgccg acgtgcacgg
5901 tcataatcac gggtgaagct attaaagtca taggttgccc cgatcccggt
5951 tctgtgttta ctaacctaaa catagcccca tggaacgggg ttaagtttcc
6001 tattttagat tttgaaaatt aattaagttt ctaattaagt atgactgatc
6051 ctagcaagaa tgtctccggt ggccccacca acccgccccc aaaagttgcc
6101 gccggcgcta ccccgcctca gggcaagact cccgaaccaa cgcccgccga
6151 cacttccgac cccacccgtg gcccctcctt gagccagctc cgccaagtca
6201 aatacgtgtc agccaccacg tctgtggcaa cacctgaaga gatcaagctc
6251 cttggcagcc tgtacgagcg catgggtatc gacaagaacg atgtggcccc
6301 tgcgatgtgg gacctggcta gagcctacgc cgacgtgcaa tccagccaat
6351 ccgctgtttt agttggaacc acaccatcta acccagccat cacacgccag
6401 gccctcagca ggcaggtgct caccatcaat gtcacaccac gccaattctg
6451 cagctacttc gctaaggttg tctggaacat gtgcattgac tctggcattg
6501 caccggccaa ttgggttaag atgggtttac aggagccgga acgtttcgcc
6551 ggatttgact tcttcgaggc cgtgctttcc cccgctgctt tagagccaga
6601 aggaggactt gtgaggcagc ccactatgcg cgaaattcaa gcccatgctc
6651 ttaccaaggc tggcgctctc gcccgtcaga agatccagaa tggcaactac
6701 atatccaact tggccgaagt cacacgcgga cgcgtcggcg gagtcaacac
6751 catgtacgcc atcgaagagc caccggagct ttaaataaca cttgcaaact
6801 taaataagtg tgtggttttc tacagtttat tttccaccta cctagtagtc
6851 a