Sequence of DPV Barley yellow dwarf virus Ker-II
Barley yellow dwarf virus Ker-II isolate K465, complete genome.
ACC No: KC572000
Dated: 2013-06-13 | Length: 5763 | CRC: -1464981985
ID KC572000; SV 1; linear; genomic RNA; STD; VRL; 5763 BP.
XX
AC KC572000;
XX
DT 13-JUN-2013 (Rel. 117, Created)
DT 13-JUN-2013 (Rel. 117, Last updated, Version 1)
XX
DE Barley yellow dwarf virus Ker-II isolate K465, complete genome.
XX
KW .
XX
OS Barley yellow dwarf virus Ker-II
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Luteovirus; unclassified Luteovirus.
XX
RN [1]
RP 1-5763
RA Svanella-Dumas L., Candresse T., Hulle M., Marais A.;
RT "Distribution of Barley yellow dwarf virus-PAV in the sub-Antarctic
RT Kerguelen Islands and characterization of two new Luteovirus species";
RL Unpublished.
XX
RN [2]
RP 1-5763
RA Svanella-Dumas L., Candresse T., Hulle M., Marais A.;
RT ;
RL Submitted (01-FEB-2013) to the INSDC.
RL UMR 1332 Biologie du Fruit et Pathologie, INRA, 71 Avenue Edouard
RL Bourleaux, Villenave d'Ornon Cedex, CS 20032 33883, France
XX
CC ##Assembly-Data-START##
CC Assembly Method :: Mega v. 5.02
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
XX
FH Key Location/Qualifiers
FH
FT source 1. .5763
FT /organism="Barley yellow dwarf virus Ker-II"
FT /host="Poa cookii"
FT /isolate="K465"
FT /mol_type="genomic RNA"
FT /country="France:Kerguelen Islands Chionis"
FT /collection_date="2009"
FT /PCR_primers="fwd_seq: gaaagggtccggcactttgacaggag, rev_seq:
FT gaaagggtccggcactttgacaggag"
FT /db_xref="taxon:1304863"
FT 5'UTR 1. .154
FT gene 155. .2757
FT /gene="ORF1"
FT CDS join(155. .1171,1171. .2757)
FT /codon_start=1
FT /ribosomal_slippage
FT /gene="ORF1"
FT /product="RNA-dependent RNA polymerase P1-P2 fusion"
FT /protein_id="AGN54066.1"
FT /translation="MVFFELLIGASVKAVKDFISHCYSRLKSIYYSLKRWLWEIQGKFK
FT AHDAFVNMCYGHMADIEDFEIPLADEFVASEEELAMAQAKLKYMVALEAESGVEDAYTQ
FT LCIKKGYHSLTTMAKPTKGELAASTEALEAKISSHYSLIANTNREYIKNKGKGYINTFN
FT SLFNRLHFVKKEADLAKENEDAAWKMQQQLFSVENIQELHDFTEVAREENGCKKMITKL
FT VNNEEIQEEVPVKVEVRRIKCSEQAREKAAIWIRAYIKVKNSTLTADELSMATISKYVE
FT NLCEKHSMSAESRTYLTKCACLMVPLPTREEIDIKMTIQSPAARSRREQIEILDAQGFL
FT NGLCTESGFESPFSILGLPEISVTDGARLRKQSSRIRFLSQTSLGLVFQAPNASLHNAL
FT VAIERRVLTVGKGSEITLPPRPEQEIFTESMKYFSDEIVNHVGYCKVYSPEALAMSYHA
FT GKRSQYFKAIESLKVRPYEEKDARVTAFLKKEKHWMIKPIAPRLICPRSKRYNIILGTH
FT LKFNEKKIMHAIDGVFGSPTVLSGFDSFQQGRVIAKKWQKFTNPVAIGVDASRFDQHVS
FT EQALKWEHSIYKDIFNNPILELALSHQLKNDISMFVEDKMLRFKVEGHRMSGDINTSMG
FT NKLIMCGMMHAYFKSLNVEAELCNNGDDCVIICERKDEAKFSGMYDFFLRYGFNLVTEH
FT PVYELEQLEFCQSKPVCVNGRYRMVRRPDCMSKDSHTLLSMLGPEDVKSYMSAVAQCGL
FT VLNSGVPILESFYECLYRSSGYKKVSEAFIKNVISYGTEERLQGRRARQIEPITLGTRL
FT SYWESFGVDPRTQEIVERYFNGLQISTQLQRVKVTTPHLQSILLSIPEKPPPATQ"
FT CDS 155. .1174
FT /codon_start=1
FT /gene="ORF1"
FT /product="RNA-dependent RNA polymerase P1"
FT /protein_id="AGN54065.1"
FT /translation="MVFFELLIGASVKAVKDFISHCYSRLKSIYYSLKRWLWEIQGKFK
FT AHDAFVNMCYGHMADIEDFEIPLADEFVASEEELAMAQAKLKYMVALEAESGVEDAYTQ
FT LCIKKGYHSLTTMAKPTKGELAASTEALEAKISSHYSLIANTNREYIKNKGKGYINTFN
FT SLFNRLHFVKKEADLAKENEDAAWKMQQQLFSVENIQELHDFTEVAREENGCKKMITKL
FT VNNEEIQEEVPVKVEVRRIKCSEQAREKAAIWIRAYIKVKNSTLTADELSMATISKYVE
FT NLCEKHSMSAESRTYLTKCACLMVPLPTREEIDIKMTIQSPAARSRREQIEILDAQGF"
FT gene 2872. .4893
FT /gene="ORF3"
FT CDS 2872. .4893
FT /codon_start=1
FT /transl_except=(pos:3460. .3462,aa:OTHER)
FT /gene="ORF3"
FT /product="aphid transmission protein P5"
FT /note="created by ribosomal read-through of the ORF3 stop
FT codon"
FT /protein_id="AGN54067.1"
FT /translation="MNSVGRRRASKNVRARRNRTVRPVVVVRTNPNGRRRRAARPARRG
FT RPNPILGPAGRSEIFVFSINDIKANSSGVIKFGPDLSQCPALSNGILKSYHRYKISNVK
FT IEFKSHASSTTVGAMFIELDTACTQSTLGSYINSFTLSKSGTKTFNAQQIAGKEFRETS
FT VNQFYVLYKANGVSSDTAGQFIITLRVSNMTPKXVDSSTPEPGPKPKPDPTPTPAPKAP
FT MRFFEYIGTPTGTIQSRETSDSISVSKLGDQAFQKIENERSNDVFLSSYWQYSNSVYAQ
FT AAFVIPIYKGSYSVNISCEGMQSVDHIGGEQDGFWIGLVAYSNSTDDVWGVGNYKGCTI
FT SNYLLTNSWRPGHKDLKLNDCAFDQGQVVERDAVISFHVEAVGENPSFYLLAPKTQKTD
FT KYNYIVSYGGYTNKKMEFGTISITCDESDVEALRIARHANQAVKENHQQISYGLGNLLP
FT PYSPDRVEVYPDITSSERTVETRPSEKTTFQHFTQEEIEEIDLYNLATSEIPDAEQDVL
FT PTKQELSRKPIDSLGTQIPRPRSMSPEYPRPRSLSPENPRPMSRSPEYSRPKSRSPEPI
FT GTYNSQNIYDDDLPPAMARRLREVADLPSTMLYNQKPKNTRSSMLSRFIEKNKTPDATA
FT PSEATTSRMTRDQLKEYTRIRNQFGLTRAKEYKASLGL"
FT CDS 2872. .3462
FT /codon_start=1
FT /gene="ORF3"
FT /product="coat protein P3"
FT /protein_id="AGN54068.1"
FT /translation="MNSVGRRRASKNVRARRNRTVRPVVVVRTNPNGRRRRAARPARRG
FT RPNPILGPAGRSEIFVFSINDIKANSSGVIKFGPDLSQCPALSNGILKSYHRYKISNVK
FT IEFKSHASSTTVGAMFIELDTACTQSTLGSYINSFTLSKSGTKTFNAQQIAGKEFRETS
FT VNQFYVLYKANGVSSDTAGQFIITLRVSNMTPK"
FT gene 2906. .3364
FT /gene="ORF4"
FT CDS 2906. .3364
FT /codon_start=1
FT /gene="ORF4"
FT /product="movement protein P4"
FT /protein_id="AGN54069.1"
FT /translation="MSEPGAIEQFGQWLWSGPIQMDDDAEPLDQQEEEGQILYLDQQAG
FT LRYSYSQSTILKPTPQGSSNSAPIFHNVQRFQTEFLSPTTVTRSQMSRSSLSHTRPPLQ
FT SAQCLLNSTLRAHNQPWVATLTHSPSPSREPKRLMPSKSRAKNSGRLR"
FT gene 5023. .5133
FT /gene="ORF6"
FT CDS 5023. .5133
FT /codon_start=1
FT /gene="ORF6"
FT /product="P6"
FT /protein_id="AGN54070.1"
FT /translation="MGGLEVIATCLVANVFLQAVNTIVNTCICVGAIVAT"
FT 3'UTR 5131. .5763
XX
SQ Sequence 5763 BP; 1733 A; 1414 C; 1266 G; 1350 T; 0 other;
kc572000 Length: 5763 13-JUN-2013 Type: N Check: 6436 ..
1 agtgaagatt gacccttcac taaagttctc ttgtgctaga gagacgcggc
51 tcaccctttt tgtcttaggg aagtcgtttg caaaggtcac agcgtcgcct
101 gactcgccgc tgccgccccg ccctctcacc tttctacccc ttccacctcc
151 catcatggtt ttctttgaac ttctgatagg tgctagtgta aaggccgtca
201 aggatttcat ctcccactgc tatagccgtc ttaaatcaat atactactct
251 ttgaagagat ggctttggga gatacagggc aaatttaagg cccacgacgc
301 attcgtcaac atgtgttatg gacacatggc ggatatagag gacttcgaaa
351 ttcctctagc tgacgaattt gttgcgtcag aagaagagct agccatggct
401 caagcaaaac ttaagtatat ggtagccctg gaagctgaat ccggtgtaga
451 agatgcctac acccaactat gcatcaagaa agggtaccat tcactcacca
501 ccatggctaa gccgacaaaa ggcgaactag cagcctctac tgaggcccta
551 gaagcaaaga tttcaagtca ctactccctc atcgccaaca ccaataggga
601 gtacatcaag aacaaaggga agggatacat caataccttc aattcccttt
651 ttaaccgcct gcactttgtc aagaaggaag ctgacttggc aaaggaaaac
701 gaagatgcag catggaagat gcagcagcag ctcttttctg tagaaaacat
751 acaggagctg catgacttca ccgaggttgc tcgtgaagaa aatggctgca
801 aaaaaatgat caccaagctc gtcaacaacg aggagataca ggaggaggtt
851 cctgtaaaag ttgaagttcg cagaatcaag tgctctgagc aagccagaga
901 aaaagctgcc atctggatta gggcctacat caaggtcaaa aattcaactt
951 taactgcaga cgaactttcc atggcaacaa tctccaaata tgttgaaaat
1001 ttatgtgaga agcatagcat gtctgctgaa agccgcacat acctcacgaa
1051 gtgcgcctgc ctgatggtcc ccctgcccac acgcgaggaa atcgacataa
1101 aaatgaccat ccaatcccct gctgctcgtt ctagacgcga gcagattgaa
1151 attcttgatg ctcagggttt ttgaatgggc tctgtaccga gtcaggtttt
1201 gaaagcccct tttcaatact tggcttgcct gaaatctcgg tcacagacgg
1251 agcccgccta cgtaagcagt ctagtagaat tcgtttctta tcgcaaacta
1301 gtttaggatt agtttttcaa gcccccaacg caagcctaca caatgcactc
1351 gtagcaattg aaaggagagt tctcaccgtt ggaaaaggaa gcgagataac
1401 cctccctccg agaccagagc aagaaatttt cactgaatct atgaaatact
1451 tctcggatga aattgtaaat catgtgggtt attgtaaggt ttactctccc
1501 gaagctcttg ccatgagcta ccatgccgga aaaaggtcac aatattttaa
1551 ggcaattgag tccctcaaag ttcgaccata tgaagagaag gacgcccgag
1601 ttactgcctt tctcaagaag gagaaacatt ggatgatcaa gcccattgcc
1651 cccagactca tatgccccag aagcaaacga tacaatatca tcctggggac
1701 tcacctcaaa ttcaatgaaa agaagatcat gcacgccatt gatggtgtgt
1751 ttggatcccc cacagtactt tcaggtttcg actcatttca acaaggaagg
1801 gtgattgcca aaaagtggca gaaattcacc aaccctgttg ctatcggagt
1851 tgacgccagc cggtttgacc aacacgtgtc tgaacaggct ctgaagtggg
1901 aacatagcat ctacaaagat atattcaaca atccaattct cgaattggca
1951 ctgtcacatc aattgaaaaa tgatatatct atgtttgtag aagacaaaat
2001 gttgaggttc aaagttgaag ggcatcgcat gtccggcgat attaacacaa
2051 gcatggggaa taagcttatt atgtgtggaa tgatgcatgc ttatttcaaa
2101 tccctaaacg tcgaagcaga actttgtaac aacggagacg attgtgtcat
2151 aatctgtgag aggaaagacg aagccaaatt ttctggcatg tacgacttct
2201 ttctcaggta tggattcaat ctggttactg aacaccccgt ttacgaactt
2251 gaacagctag agttctgcca atcaaaacct gtttgtgtca atggaagata
2301 tagaatggta cgaagacctg actgcatgtc aaaagacagc cacaccttgt
2351 tgagtatgct cggcccagag gacgtcaagt cctacatgtc agccgttgct
2401 cagtgtgggc ttgtcttgaa ttcaggcgta cccattcttg aaagttttta
2451 cgagtgcttg taccgaagta gcggttataa gaaagtatct gaggcgttca
2501 tcaaaaacgt catatcctat ggtacggagg aaaggcttca gggtagacgt
2551 gcccgccaaa tcgagcctat taccttagga acaagactca gctactggga
2601 atcatttgga gttgatccga ggacacaaga aatcgttgag aggtacttta
2651 acggtcttca gatcagtact cagctccaaa gagtgaaggt gacaactcca
2701 catctgcaat caatccttct ctcaatccca gagaaaccac cacccgctac
2751 acaatagatt ttcatttcct taccggctta ggaataggtt tcattttagc
2801 aataccttgt acattagctc tcgtgtattt catttacaat aaagtttcag
2851 acaccactag agaggtggtg aatgaattca gtaggccgta gaagagcaag
2901 caaaaatgtc agagccaggc gcaatagaac agttcggcca gtggttgtgg
2951 tccggaccaa tccaaatgga cgacgacgcc gagccgctcg accagcaaga
3001 agaggaaggc caaatcctat acttggacca gcaggcaggt ctgagatatt
3051 cgtattctca atcaacgata ttaaagccaa ctcctcaggg gtcatcaaat
3101 tcggccccga tctttcacaa tgtccagcgc tttcaaacgg aattcttaag
3151 tcctaccacc gttacaagat ctcaaatgtc aagatcgagt ttaagtcaca
3201 cgcgtcctcc actacagtcg gcgcaatgtt tattgaactc gacactgcgt
3251 gcacacaatc aaccttgggt agctacatta actcattcac cctctccaag
3301 tcgggaacca aaacgtttaa tgcccagcaa atcgcgggca aagaattccg
3351 ggagacttcg gtgaaccagt tttatgtgtt gtataaagct aacggtgtgt
3401 catcggacac agcaggacaa ttcatcatca ccttgcgggt ttcaaacatg
3451 actcccaaat aggtagactc ctcaacacca gaacccggcc caaagcctaa
3501 accagacccc acacctaccc cagcaccaaa agcacccatg agatttttcg
3551 agtacatcgg aacaccaaca ggaacaatcc aatctcggga aacatcggac
3601 agcatttctg tgtccaagct gggagatcag gcattccaaa agatcgagaa
3651 cgagaggtcc aatgacgtct ttctctcgtc ttactggcaa tacagtaaca
3701 gtgtctacgc tcaagcagcc tttgtgattc ccatctacaa aggtagttac
3751 agtgtaaaca tatcatgtga aggaatgcaa tctgttgatc atataggagg
3801 ggaacaagat ggattttgga taggtttagt agcctattcc aattccactg
3851 atgacgtctg gggcgtcggg aattacaaag gttgcacaat ctccaattac
3901 ctcctcacca actcatggag gccaggtcac aaggacctca agcttaatga
3951 ttgtgcattc gaccaaggcc aagtcgtaga aagagacgca gtcatatcgt
4001 tccatgtgga agctgtcggt gaaaacccca gtttctactt actagcacca
4051 aaaacgcaaa agactgacaa atataattat atcgtctcct acggtggcta
4101 caccaacaag aaaatggaat ttggaacaat atccattact tgtgatgaat
4151 ctgatgttga ggcactccga attgcaaggc acgcaaatca agccgtaaag
4201 gaaaaccatc aacaaatttc ctacggtttg ggtaacctgc taccccccta
4251 ctctcctgat agagtagaag tctatcctga tatcactagc tctgagcgaa
4301 cggttgaaac ccgtcctagt gagaagacca cattccaaca ttttactcag
4351 gaagaaatag aagagatcga cctgtacaat ctcgccacct ctgaaatacc
4401 tgacgcagaa caagatgttt tgcccaccaa gcaagaattg agcagaaagc
4451 caattgatag cttgggcact caaattccac gtcctaggtc catgtctccg
4501 gagtaccccc ggccacggtc cttgtctcca gagaatcctc gaccaatgtc
4551 gcggtctccg gagtatagcc gaccaaaatc acggtctccc gaaccaattg
4601 gaacctacaa tagccaaaac atctatgatg acgacctccc ccctgcaatg
4651 gcccggaggc tcagagaggt tgcagattta ccatccacca tgctctacaa
4701 ccaaaaaccc aaaaatacta ggtctagcat gctttctcga tttatagaga
4751 aaaataaaac accagatgct accgcccctt ccgaggccac aacctcgcga
4801 atgacccgag accaattgaa agaatacact cgtattagaa accaatttgg
4851 tctgacccgg gctaaggaat acaaggcttc actcggattg tgaaggtgaa
4901 agactgcacc ctttcacact acccaccact ggcaaaagac ggatcctggg
4951 aaacaggcag tgcctaggca cgtaagctcg gggatactag tcatatcccg
5001 acgtatcact tttgtctggt cgatgggtgg cctggaggtc attgctacct
5051 gtttggtagc aaatgtattt cttcaagcgg tcaataccat tgtaaataca
5101 tgcatctgtg ttggcgctat tgtcgccaca taaaccaaaa acgccactgt
5151 gctgtgagca gaggcactac aaaaacaaag aagggagcca ttggctcagg
5201 aaagaggcta atcacctcat gacaggctgg tctaggtgga cttaaataac
5251 ccaccgcaag acaactggaa accaaccagc gatcaaataa ggtagcttgc
5301 ttctgagtta tacactgccc cagtaacgcc tgggtaaaca aagcttcaca
5351 ccactccgat gagaagagga gagagtgtgc ggggttaggg atcccgtgac
5401 ataccctaga tcgtcgtggc ttggggacgt taaaacgcac gaccttatca
5451 tgtcgttaaa ccgattaaga ccttatcaag tcgttaaact gatagtcatc
5501 tcccgagtga tgacccccac taatgactta taggaacgat acgaaacgtt
5551 ctactacccg atgccggaac cccctcgcgg tcggcctgga tgagaaacca
5601 ggattacatc cggtagttgg ctcgaatggc catagcacaa gtcaggttca
5651 gggaaagata cttcggaagc gcgcctatgc aggcctctga gttgccaacc
5701 ggcaagacaa ctcatgagta ttttcactgg taacagtgaa agggtccggc
5751 actttgacag gag