Sequence of DPV Tomato yellow leaf curl Yunnan virus
Tomato yellow leaf curl Yunnan virus isolate YN2013 clone 2 segment DNA-A, complete sequence.
ACC No: KC686707
Dated: 2013-05-28 | Length: 2754 | CRC: 1158984283
ID KC686707; SV 1; circular; genomic DNA; STD; VRL; 2754 BP.
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AC KC686707;
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DT 28-MAY-2013 (Rel. 116, Created)
DT 28-MAY-2013 (Rel. 116, Last updated, Version 1)
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DE Tomato yellow leaf curl Yunnan virus isolate YN2013 clone 2 segment DNA-A,
DE complete sequence.
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KW .
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OS Tomato yellow leaf curl Yunnan virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RP 1-2754
RA Ding M., Li W.H., Zhang Z.K., Zhou X.P.;
RT ;
RL Submitted (22-FEB-2013) to the INSDC.
RL Institute of Biotechnology and Germplasm Resources, Yunnan Academy of
RL Agricultural Sciences, Xueyun Road No. 9, Kunming, Yunnan 650223, China
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CC ##Assembly-Data-START##
CC Assembly Method :: DNASTAR v. 6.0
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .2754
FT /organism="Tomato yellow leaf curl Yunnan virus"
FT /segment="DNA-A"
FT /host="Solanum lycopersicum"
FT /isolate="YN2013"
FT /mol_type="genomic DNA"
FT /country="China"
FT /collection_date="22-Jan-2011"
FT /clone="2"
FT /db_xref="taxon:1335768"
FT gene 104. .487
FT /gene="AV2"
FT CDS 104. .487
FT /codon_start=1
FT /gene="AV2"
FT /product="AV2 protein"
FT /protein_id="AGM20536.1"
FT /translation="MTCQTSGFRSAMWDPLLNEFPETVHGFRCMLAIKYLQLVENTYSP
FT DTLGYDLIRDLILVIRARDYVEASRRYSHFHTRFQGSSPSELRQPICQPCCCPHCPRHK
FT QKEVMGEQAHVPKAQDVQDVQKS"
FT gene 297. .1070
FT /gene="AV1"
FT CDS 297. .1070
FT /codon_start=1
FT /gene="AV1"
FT /product="CP protein"
FT /protein_id="AGM20537.1"
FT /translation="MSKRPADIVISTPASKVRRRLNFDSPYVSRAAAPTVLVTNKRRSW
FT VNRPMYRKPKMYRMYKSPDVPRGCEGPCKVQSYEQRHDVAHVGKVICVSDVTRGNGLTH
FT RVGKRFCVKSIYVLGKIWMDENIKTKNHTNTVMFFLVRDRRPFGTPQDFGQVFNMYDNE
FT PSTATVKNDNRDRFQVLRRFQATVTGGQYASKEQAIVRKFMKVNNHVTYNHQEAAKYDN
FT HTENALLLYMACTHASNPVYATLKIRIYFYDSVQN"
FT gene complement(1067. .1471)
FT /gene="AC3"
FT CDS complement(1067. .1471)
FT /codon_start=1
FT /gene="AC3"
FT /product="REn protein"
FT /protein_id="AGM20538.1"
FT /translation="MDSRTGELITATQAENGAYIWMVPNPLYFKIIKHDQRPFLMNHDI
FT ITIRIQFNHNLRKALGLHQCFLIFQIWTRLQPQTWRFLRVFRVQCMQYLNNLGIVSINN
FT VIRSVNHVLWDVLHGTIYVDHSNIIKFKLY"
FT gene complement(1212. .1616)
FT /gene="AC2"
FT CDS complement(1212. .1616)
FT /codon_start=1
FT /gene="AC2"
FT /product="TrAP protein"
FT /protein_id="AGM20539.1"
FT /translation="MQNSSPSRNHCTQVPIKVQHRIAKKSVRRRRVDLPCGCTYYYSIN
FT CANHGFSHRGTHHCNSSREWRVYLDGSKSPIFQNNQTRPATVLNEPRHNHDPNTVQPQP
FT EESVGTTPMFSDLPDLDSLTTSDLAFLKSI"
FT gene complement(1519. .2604)
FT /gene="AC1"
FT CDS complement(1519. .2604)
FT /codon_start=1
FT /gene="AC1"
FT /product="rep protein"
FT /protein_id="AGM20540.1"
FT /translation="MTPPKRFQIYAKNYFLTYPQCSLTKEEALSQLQNLQTPTNKKYIK
FT ICRELHEDGSPHLHVLIQFEGKYKCQNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYL
FT EKDGDTIEWGEFQIDARSARGGQQSANDAYAKALNSGSKSEALIVIKELAPKDFVLQFH
FT NLNANLDRIFAPPLEEFVCPFLSSSFDRVPEELECWAANNVRDAAARPWRPISIVIEGE
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVVDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEDKNSALKAWALKNAEFITLTEPL
FT YSSTNQGPTQNSEEERATPES"
FT gene complement(2157. .2447)
FT /gene="AC4"
FT CDS complement(2157. .2447)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4 protein"
FT /protein_id="AGM20541.1"
FT /translation="MGLLISTCLSNSKENTSAKITDSSIWYPQPGQHISIRTYRELNPA
FT PTSSPIWRRTETPSNGESFRSMQDLQEGDNNQPMTLTPRRLTAEVSQRLLS"
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SQ Sequence 2754 BP; 733 A; 550 C; 612 G; 859 T; 0 other;
kc686707 Length: 2754 28-MAY-2013 Type: N Check: 6522 ..
1 accggatggc cgcgattttt ttaaagtggt cccctccact aactcttgtc
51 gcccactaga aacgctccct catcgcttat ttaaatgttt ttgtcttata
101 tatatgactt gccaaacaag tgggtttcgt agtgcgatgt gggatccact
151 cttgaatgaa ttcccagaaa ccgtacatgg ttttaggtgt atgttagcaa
201 ttaagtattt acaattagta gaaaatacat attctcctga tacattaggg
251 tacgatttaa ttcgtgattt aatattagtt attcgtgcta gagattatgt
301 cgaagcgtcc cgccgatata gtcatttcca cacccgcttc caaggttcgt
351 cgccgtctga acttcgacag cccatatgtc agccgtgctg ctgcccccac
401 tgtcctcgtc acaaacaaaa ggaggtcatg ggtgaacagg cccatgtacc
451 gaaagcccaa gatgtacagg atgtacaaaa gtcctgatgt tcctcgtgga
501 tgcgaaggcc catgtaaggt ccagtcttat gaacaacgtc acgatgtggc
551 ccatgtaggt aaagtaattt gtgtgtcgga tgtcacccgt ggtaatgggt
601 tgacgcatag agtggggaag aggttctgtg tcaagtctat ttacgtttta
651 ggtaagatct ggatggatga gaacattaag accaagaatc acaccaatac
701 agtcatgttc tttttggttc gtgataggag accatttggt actcctcaag
751 attttggtca ggtttttaac atgtatgata acgagccaag tacagccact
801 gtgaagaacg acaacagaga tcgttttcag gtccttcgtc gattccaggc
851 gacggtgacg ggtggtcagt atgcaagcaa ggagcaagcc atagttagga
901 aattcatgaa ggttaataat catgttactt acaatcatca agaggctgcg
951 aagtatgata accatacaga gaatgctctt ttattgtata tggcatgtac
1001 tcatgctagt aacccagtgt atgctacttt gaagatcagg atctatttct
1051 atgattctgt tcaaaattaa taaagtttga attttattat atttgaatga
1101 tctacataaa ttgttccgtg caaaacatcc cataatacat gattcacaga
1151 tcgaattaca ttattaatgg atacaatccc taaattattt aagtattgca
1201 tacattgaac cctaaatact cttaagaaac gccaagtctg aggttgtaag
1251 cgagtccaga tctggaagat cagaaaacat tggtgtagtc ccaacgcttt
1301 cctcaggttg tggttgaact gtattcggat cgtgattatg tcgtggttca
1351 ttaagaacgg tcgctggtcg tgtttgatta ttttgaaata taggggattt
1401 ggaaccatcc aaatatacgc gccattctct gcttgagttg cagtgatgag
1451 ttccccggtg cgagaatcca tgattggcgc agtttattga gtaataatat
1501 gtgcagccac agggtagatc aactctccgg cgtcgcacgc tcttcttcgc
1551 tattctgtgt tggaccttga ttggtacttg agtacaatgg ttccgtgagg
1601 gtgatgaatt ctgcattctt tagagcccaa gcttttagtg cggaattctt
1651 atcctcgtcc aagtactctt tatatgatga tgttggtcca ggattgcata
1701 ggaagattgt cgggatacct cctttaattt gaattggttt cccgtacttt
1751 gtgttgcttt gccagtccct ttgggccccc atgaattctt tgaagtgctt
1801 taggtagtgg ggatctacgt catcaaccac gttgtaccac gcatcattgc
1851 tgtatacttt agggcttaga tcaaggtgcc cacataaata attatgtgga
1901 cccagtgacc gtgcccacat agtcttccct gtacgactct caccctctat
1951 gactatactt atgggtctcc atggccgcgc agcggcatcc cttacattat
2001 tggcagccca gcattcaagt tcttctggaa cccgatcgaa cgaagacgat
2051 aaaaatggac aaacaaattc ctctagagga ggtgcaaaaa tcctatctaa
2101 attagcattt aaattatgaa attgtaaaac gaaatctttg ggggctaatt
2151 ccttaattac gataagagcc tctgacttac ttccgctgtt aagcgccttg
2201 gcgtaagcgt cattggctga ttgttgtccc cctcttgcag atcttgcatc
2251 gatctgaaac tctccccatt cgatggtgtc tccgtccttc tccagatagg
2301 acttgacgtc ggagctggat ttagctccct gtatgttcgg atggaaatgt
2351 gctgacctgg ttggggatac caaatcgaag aatctgttat tttggcactt
2401 gtattttcct tcgaattgga taagcacgtg gagatgagga gacccatctt
2451 cgtgaagctc tctgcagatt tttatgtatt ttttatttgt aggggtttgt
2501 aggttttgta attgggaaag tgcttcttct tttgtaagtg agcactgtgg
2551 ataagtgagg aaataatttt tggcgtatat ttggaaacgt ttgggaggag
2601 tcatttgact ggtcaatcgg tactcaacaa actccgctat gcaatcggtg
2651 attggtactc aatatatagt tgagtaccaa atggcattat tgtaattccc
2701 aaaagaaatt caaaattaaa ttttgaaatc caaagcggcc atccgtataa
2751 tatt