Sequence of DPV Blainvillea yellow spot virus
Blainvillea yellow spot virus isolate BR:Vic13:10 segment DNA-A, complete sequence.
ACC No: KC706521
Dated: 2013-05-12 | Length: 2663 | CRC: 2056847885
ID KC706521; SV 1; circular; genomic DNA; STD; VRL; 2663 BP.
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AC KC706521;
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DT 24-MAR-2013 (Rel. 116, Created)
DT 12-MAY-2013 (Rel. 116, Last updated, Version 2)
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DE Blainvillea yellow spot virus isolate BR:Vic13:10 segment DNA-A, complete
DE sequence.
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KW .
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OS Blainvillea yellow spot virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RP 1-2663
RX PUBMED; 23487451.
RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T., Silva F.N., Xavier C.A.,
RA Hora-Junior B.T., Beserra-Junior J.E., Malta A.W., Martin D.P., Varsani A.,
RA Alfenas-Zerbini P., Mizubuti E.S., Zerbini F.M.;
RT "Brazilian begomovirus populations are highly recombinant, rapidly
RT evolving, and segregated based on geographical location";
RL J. Virol. 87(10):5784-5799(2013).
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RN [2]
RP 1-2663
RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T.M., Silva F.N., Xavier C.A.D.,
RA Hora-Junior B.T., Beserra-Junior J.E.A., Malta A.W.O., Martin D.P.,
RA Varsani A., Alfenas-Zerbini P., Mizubuti E.S.G., Zerbini F.M.;
RT ;
RL Submitted (26-FEB-2013) to the INSDC.
RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n,
RL Vicosa, MG 36570-000, Brazil
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CC ##Assembly-Data-START##
CC Assembly Method :: DNAman v. 7
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .2663
FT /organism="Blainvillea yellow spot virus"
FT /segment="DNA-A"
FT /host="Blainvillea rhomboidea"
FT /isolate="BR:Vic13:10"
FT /mol_type="genomic DNA"
FT /country="Brazil"
FT /collection_date="2010"
FT /db_xref="taxon:536081"
FT CDS 232. .987
FT /codon_start=1
FT /product="coat protein"
FT /note="CP"
FT /protein_id="AGH29563.1"
FT /translation="MPKRDAPWRHMTGTSKISRSVNFSPRSTVGPRSNKANDWVNRPMY
FT RKPKIYRMYRNPDVPRGCEGPCKVQSYEQRHDVSHVGKVMCVSDVTRGNGITHRVGKRF
FT CVKSVYIIGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV
FT KNDLRDRFQVMHKFYGKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENAL
FT LLYMACTHASNPVYATLKIRIYFYDSISN"
FT CDS complement(984. .1382)
FT /codon_start=1
FT /product="replication-enhancer protein"
FT /note="REN"
FT /protein_id="AGH29564.1"
FT /translation="MDSRTGELITAPQAENGVYIWETPNPLYFKIYQVEDLRYTTTRVY
FT HIQIRFNHNVRKALDLHKAYLNFQVWTTSLTASGTAYLSRFQYLVMLYLNRLGVISINN
FT VIRAVRFATDKAYIHHVLEQHSIKFKIY"
FT CDS complement(1129. .1524)
FT /codon_start=1
FT /product="transactivating protein"
FT /note="TRAP"
FT /protein_id="AGH29566.1"
FT /translation="MRNSSFSTPPSIKAQHRAAKQRQRAIRRRRIDLPCGCSIFLHINC
FT RGHGFTHRGTHHCTSGGEWRLYLGDTKSPLFQDIPSRGPEIHNDKSISHSDQVQPQRAE
FT SVGSPQGLSELPSLDDFPDSFWNGVLE"
FT CDS complement(1445. .2521)
FT /codon_start=1
FT /product="replication-associated protein"
FT /note="REP"
FT /protein_id="AGH29565.1"
FT /translation="MSKPGRFRIQSKNYFLTYPKCSVTKEEALAQLLALDTPTNKKYIR
FT VCRELHENGEPHLHALLQFEGKFTCTNCRFFDLRHPRNSNVCHGKYESCRSSADAKSYV
FT EKDGDYIEWGNFQIDGRSARGGKQTANDSYAKALNTSSIDQALDIIKEEQPQHFFLQYH
FT NLVSNAQRIFKSVPEPWVPPFPLSSFTNVPEEMQAWADDYFGRSAAARPERPISIIIEG
FT DSRTGKTMWARALGVHNYLSGHLDFNPKCYSNEAHYNIIDDVDPKYLKMKHWKELIGAQ
FT KDWQSNCKYGKPVQIKGGIPCIVLCNPGEGASYKRFLDKEENSGLNNWTKHNAKFVFLN
FT TPLYQSAASSSETTSTCD"
FT CDS complement(2107. .2364)
FT /codon_start=1
FT /product="AC4 protein"
FT /note="AC4"
FT /protein_id="AGH29562.1"
FT /translation="MGSLISMLCCNSKGSSRARIADSSIYDIQEIPMFVMASTNLAGHP
FT PTPNHMLRRTEITSNGVIFRSTEDLLEEVNRQLTIHTQRR"
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SQ Sequence 2663 BP; 684 A; 548 C; 610 G; 821 T; 0 other;
kc706521 Length: 2663 12-MAY-2013 Type: N Check: 6084 ..
1 acctgagggc cgccccgccc tggagactct acttttgacg tggcgcctga
51 tgtccgtttg tttaagttat gttggagatt gggcctgtcc ctttgcccca
101 cttgctttaa ttaaagttgt ctaggcccaa tcattttgcg tttcccgagc
151 ttagatatta ttaaagacgt gggcgccaag ttcgataaag gctataaatg
201 tatggtgacc ggacggtcac tttaattcaa aatgcctaag cgcgatgccc
251 catggcgcca tatgacaggg acgtccaaaa ttagccggtc tgttaatttt
301 tcacctcgtt caactgttgg gccacgatcc aacaaggcca atgactgggt
351 taacaggcct atgtacagga agcccaagat atatcgtatg tataggaacc
401 ccgatgttcc aaggggttgt gaaggtcctt gtaaagtcca atcttatgag
451 caacgtcatg atgtgtcgca tgtcggcaag gtgatgtgtg tttcggacgt
501 tacacgtggt aatggtatca ctcatcgagt tggaaaacgt ttttgtgtta
551 agtctgtata tattataggt aagatatgga tggacgagaa tattaagctg
601 aagaaccaca ccaacagtgt tatgttttgg ttggtgagag atcgtagacc
651 gtatggaacg cctatggact ttggccaagt gtttaacatg tttgataatg
701 agcctagtac ggctacagtt aagaacgatc ttcgtgatcg cttccaagtt
751 atgcacaagt tttatggcaa agtcactgga ggacagtatg caagtaatga
801 acaggcgctt gttaagcgct tttggaaggt gaacaaccat gtggtgtaca
851 atcatcaaga agctgggaaa tatgagaatc acacggagaa tgcattattg
901 ttgtatatgg catgtactca tgcctctaat cctgtgtatg ctacgttaaa
951 gatacggatc tatttttacg attcgatatc caattaataa attttgaatt
1001 ttattgaatg ttgttcaagt acatgatgga tatatgcttt gtctgttgca
1051 aagcgaactg ctctaattac attgttaatc gaaattacac ctaaacgatt
1101 aagatacaac ataactaagt actgaaatct actcaagtac gccgttccag
1151 aagctgtcag ggaagtcgtc cagacttgga agttcagata agccttgtgg
1201 agatccaacg ctttccgcac gttgtggttg aacctgatct gaatgtgata
1251 tactcttgtc gttgtgtatc tcaggtcctc tacttggtat atcttgaaat
1301 agaggggatt tggtgtctcc cagatataga cgccattctc cgcctgaggt
1351 gcagtgatga gttcccctgt gcgtgaatcc atgacctctg cagttaatgt
1401 gaagaaaaat ggaacagcca cacggtagat ctattcgtct tctcctaatc
1451 gcacgttgac gttgtttcgc tgctcgatgc tgcgctttga tagagggggg
1501 tgttgagaaa gacgaatttc gcattgtgct ttgtccagtt atttaatcct
1551 gagttttctt ctttgtccag gaacctttta tagctggccc cctcgccagg
1601 attgcaaagc acgatgcatg ggataccacc tttaatttga actggtttac
1651 cgtatttaca gtttgactgc cagtcctttt gggccccaat taactctttc
1701 caatgtttca tctttaaata tttggggtcc acgtcatcaa taatgttgta
1751 gtgtgcttcg ttggaatagc acttagggtt aaagtctagg tgaccactta
1801 aataattgtg gacccccaaa gcacgtgccc acattgtctt ccctgttcta
1851 gaatcacctt caattattat actaataggt ctctccggcc gcgcagcggc
1901 acttcttccg aagtaatcgt ctgcccaagc ttgcatctcc tctggcacgt
1951 tagtgaatga tgacaatgga aacggaggaa cccatggttc tggaactgat
2001 ttgaatatac gttgagcatt agatactagg ttgtgatatt gaaggaagaa
2051 gtgttgtggc tgttcttcct ttattatgtc cagagcctga tctatggacg
2101 atgtgtttaa cgcctttgcg tatgaatcgt tagctgtctg tttacctcct
2151 cgagcagatc ttccgtcgat ctgaaaatta ccccattcga tgtaatctcc
2201 gtccttctca acatatgatt tggcgtcggc ggatgacctg caagattcgt
2251 acttgccatg acaaacattg gaatttcttg gatgtcgtag atcgaagaat
2301 ctgcaattcg tgcacgtgaa cttcccttcg aattgcagca aagcatggag
2351 atgaggctcc ccattttcgt gtaactctct acatacacga atgtatttct
2401 tgttcgtcgg tgtatctaac gcgagaagct gagcgagagc ttcttctttg
2451 gttacggaac actttggata tgtgaggaaa taatttttag actgaattct
2501 aaaacgccca ggcttgctca tatttgactc caaatgagtg tctctcaaac
2551 ccccccttga aactgggctt atagtattgg agattgggga caatatatat
2601 gctagaagat atttaggtta gattgtggtc cctacaccct tgcggccctc
2651 agtatataat att