Sequence of DPV Tomato chlorotic mottle virus
Tomato chlorotic mottle virus isolate BR:Flo211:08 segment DNA-A, complete sequence.
ACC No: KC706561
Dated: 2013-05-12 | Length: 2623 | CRC: 948230002
ID KC706561; SV 1; circular; genomic DNA; STD; VRL; 2623 BP.
XX
AC KC706561;
XX
DT 24-MAR-2013 (Rel. 116, Created)
DT 12-MAY-2013 (Rel. 116, Last updated, Version 2)
XX
DE Tomato chlorotic mottle virus isolate BR:Flo211:08 segment DNA-A, complete
DE sequence.
XX
KW .
XX
OS Tomato chlorotic mottle virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2623
RX PUBMED; 23487451.
RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T., Silva F.N., Xavier C.A.,
RA Hora-Junior B.T., Beserra-Junior J.E., Malta A.W., Martin D.P., Varsani A.,
RA Alfenas-Zerbini P., Mizubuti E.S., Zerbini F.M.;
RT "Brazilian begomovirus populations are highly recombinant, rapidly
RT evolving, and segregated based on geographical location";
RL J. Virol. 87(10):5784-5799(2013).
XX
RN [2]
RP 1-2623
RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T.M., Silva F.N., Xavier C.A.D.,
RA Hora-Junior B.T., Beserra-Junior J.E.A., Malta A.W.O., Martin D.P.,
RA Varsani A., Alfenas-Zerbini P., Mizubuti E.S.G., Zerbini F.M.;
RT ;
RL Submitted (26-FEB-2013) to the INSDC.
RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n,
RL Vicosa, MG 36570-000, Brazil
XX
CC ##Assembly-Data-START##
CC Assembly Method :: DNAman v. 7
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
XX
FH Key Location/Qualifiers
FH
FT source 1. .2623
FT /organism="Tomato chlorotic mottle virus"
FT /segment="DNA-A"
FT /host="Solanum lycopersicum"
FT /isolate="BR:Flo211:08"
FT /mol_type="genomic DNA"
FT /country="Brazil"
FT /collection_date="2008"
FT /db_xref="taxon:172391"
FT CDS 199. .954
FT /codon_start=1
FT /product="coat protein"
FT /note="CP"
FT /protein_id="AGH29733.1"
FT /translation="MPKRDAPWRHMASTVKISRGVNSSPRAGVGPRSNKASDWVNRPMY
FT RKPKIYRMYRTPDVPRGCEGPCKVQSFEQRHDISHTGKVMCVSDVTRGNGITHRVGKRF
FT CVKSVYILGKIWMDENIKLKNHTNSAMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV
FT KNDLRDRFQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENAL
FT LLYMACTHASNPVYATLKIRIYFYDSITN"
FT CDS complement(951. .1349)
FT /codon_start=1
FT /product="replication-enhancer protein"
FT /note="REN"
FT /protein_id="AGH29734.1"
FT /translation="MDSRTGELITAHQAENGVYTWEISNPLYFKMYNVEDILYTRTRVY
FT HVQIRFNHNLRRVLGLHKAYLNFQIWTTSLRASGMTYLNRFKYLVMLYIDQLGVISVNN
FT VIRAVRFATDKQYVNAVLENHSIKFKIY"
FT CDS complement(1096. .1485)
FT /codon_start=1
FT /product="transactivating protein"
FT /note="TRAP"
FT /protein_id="AGH29736.1"
FT /translation="MHNSSSSTPPSIKVQHRAAKKRAIRRRRIDLQCGCSIFVHIDCAG
FT HGFTHRGTHHCTSGREWRVYLGNIKSPLFQDVQRRGHTIHEDQSLPRPNTVQPQPEEST
FT GSPQGLSQLPNLDDIPESFWDDIFK"
FT CDS complement(1427. .2482)
FT /codon_start=1
FT /product="replication-associated protein"
FT /note="REP"
FT /protein_id="AGH29735.1"
FT /translation="MPPPRHFRVNSKNYFLTYPHCSLSKEEALSQLLALNTPTNKLFIR
FT VSRELHEDGQPHLHVLIQFEGKYNCKNNKFFDLVSPSRSAHFHPNIQGAKSSSDVKSYV
FT EKDGDFVDHGVFQIDGRSTRGGQQSANDTYAKVLNAGSVMEALNILREEQPKDFVLQHH
FT NIRSNLERIFAKAPEPWVPPFPLSSFTNVPVEMQDWADVYFGRDAAARPERPISIIIEG
FT DSRSGKTMWSRALGSHNYLSGHLDFNSKVYSNDVQYNVIDDVAPHYLKLKHWKELIGAQ
FT KDWQSNCKYGKPVQIKGGIPCIVLCNPGEGASYKCFLDKDENSALSSWTKHNAQFIFLN
FT SPLYQSSTSGC"
FT CDS complement(2032. .2325)
FT /codon_start=1
FT /product="AC4 protein"
FT /note="AC4"
FT /protein_id="AGH29732.1"
FT /translation="MGNLISTCSSNSKENTTAKITSSSTSSPQVGQHISIQTYRELRAR
FT QMSNHTWKKTETSLIMEFSRSMADQLEEVSNLPTTRTPRFSTQDLSWKHSIY"
XX
SQ Sequence 2623 BP; 689 A; 553 C; 602 G; 779 T; 0 other;
kc706561 Length: 2623 12-MAY-2013 Type: N Check: 6093 ..
1 accggatggc cgcgcgattt tttttaaggc ccattcagtt tgggccgctc
51 ttttgggcct tcacctttaa ttttaatgaa agtaaatttg gcccaatcat
101 gatgcatctg acaagctaag atatttacaa ctacttaacg cccaagttgc
151 ataacggcta taaattaaac gtgcatatgt cgttaacttt aattcaaaat
201 gcctaagcgc gatgccccat ggcgccacat ggctagtaca gttaagatta
251 gccggggcgt taatagttct cctcgagcag gagttgggcc acggtctaac
301 aaggcctctg actgggtaaa caggcccatg tacaggaagc ccaagatata
351 tcggatgtat agaacacccg atgttccaag aggttgtgaa ggcccatgta
401 aagtccaatc gtttgaacag cgtcacgata tctcccatac tggtaaggtg
451 atgtgcgtct ccgatgtcac ccgtggtaac ggtattacac atcgtgtggg
501 taagcgtttc tgtgttaagt ctgtgtatat tctgggtaag atatggatgg
551 atgagaacat caagttgaag aaccacacga acagtgccat gttttggttg
601 gtcagggacc gtagaccgta tggcacccct atggactttg gccaggtgtt
651 taacatgttc gacaacgagc ctagcaccgc cactgtgaaa aacgatctcc
701 gtgatcgttt tcaagttatg cacaagttct atgctaaggt cacaggtgga
751 caatacgcaa gcaacgagca ggcgcttgtc aagcggttct ggaaggtcaa
801 caatcatgtc gtctataacc atcaagaagc cggaaagtac gagaatcata
851 cggagaacgc cctgttattg tatatggcat gtactcatgc ctcaaacccc
901 gtgtatgcaa ctttaaaaat tcggatctat ttttatgatt cgataacaaa
951 ttaataaatt ttgaatttta ttgaatgatt ctcgagtaca gcatttacat
1001 attgtttgtc tgtggcgaag cgtacagctc taattacatt attaactgaa
1051 ataacgccta gctgatcaat gtacaacata actaaatatt taaatctatt
1101 taaatatgtc atcccagaag ctctcaggga tgtcgtccag atttggaagt
1151 tgagataagc cttgtggaga cccagtactc tcctcaggtt gtggttgaac
1201 cgtatttgga cgtggtagac tctggtcctc gtgtatagta tgtcctcgac
1251 gttgtacatc ttgaaataaa ggggatttga tatttcccaa gtatacacgc
1301 cattctctgc ctgatgtgca gtgatgagtt cccctgtgcg tgaatccatg
1351 tcctgcgcaa tctatgtgta cgaaaatgga gcagccgcac tgtaaatcaa
1401 ttcgtcttct tcgtatagct ctcttcttag cagcccgatg ttgaactttg
1451 atagaggggg gagttgagga agatgaattg tgcattgtgc tttgtccaac
1501 tacttaatgc tgagttttca tccttgtcga ggaaacattt atagctggcc
1551 ccctcgccag gattgcagag cacgatgcat gggataccac ctttaatttg
1601 aactggcttt ccgtatttac agtttgattg ccaatccttt tgggccccaa
1651 tcaattcttt ccagtgcttt aactttagat agtgcggtgc gacatcatca
1701 atgacgttat actgcacatc gtttgagtag acctttgaat tgaaatcgag
1751 gtgaccactc aagtaattat gggaccctaa tgcacgtgac cacatcgttt
1801 tgccacttcg agaatcaccc tcgattatta tactgatagg tctctccggc
1851 cgcgcagcgg catctctccc gaaatagaca tctgcccaat cttgcatctc
1901 gacaggcacg ttagtgaacg acgagagtgg aaacggagga acccaaggtt
1951 ctggagcctt tgcgaaaata cgctctaaat ttgacctaat gttatgatgt
2001 tgaagcacga aatctttggg ttgttcctcc cttaatatat tgagtgcttc
2051 catgacagat cctgcgttga gaaccttggc gtacgtgtcg ttggcagatt
2101 gctgacctcc tctagttgat ctgccatcga tctggaaaac tccatgatca
2151 acgaagtctc cgtctttttc cacgtatgat ttgacatctg acgagctctt
2201 agctccctgt atgtttggat ggaaatgtgc tgacctactt ggggagacga
2251 ggtcgaagaa cttgttattt ttgcagttgt attttccttc gaattggatg
2301 agcacgtgga gatgaggttg cccatcttcg tgtagttctc tcgagacacg
2351 aatgaataat ttattagttg gtgtgtttag ggctaataat tgggaaagtg
2401 cttcttcttt ggaaagagaa cagtgtggat atgtcagaaa ataatttttg
2451 gaatttactc ggaaatgtct gggcggtggc atatttgtaa taatagttgg
2501 gcaccgattg gggactctct aaacttgctc tagcaattgg ggactggggt
2551 cctatatata ctagaaccct ctatagaact ttcaatctcg ttcacacacg
2601 tggcggccat cctatataat att