Sequence of DPV Tomato chlorotic mottle virus
Tomato chlorotic mottle virus isolate BR:Flo197:08 segment DNA-B, complete sequence.
ACC No: KC706563
Dated: 2013-05-12 | Length: 2565 | CRC: 1374014268
ID KC706563; SV 1; circular; genomic DNA; STD; VRL; 2565 BP.
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AC KC706563;
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DT 24-MAR-2013 (Rel. 116, Created)
DT 12-MAY-2013 (Rel. 116, Last updated, Version 2)
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DE Tomato chlorotic mottle virus isolate BR:Flo197:08 segment DNA-B, complete
DE sequence.
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KW .
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OS Tomato chlorotic mottle virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2565
RX PUBMED; 23487451.
RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T., Silva F.N., Xavier C.A.,
RA Hora-Junior B.T., Beserra-Junior J.E., Malta A.W., Martin D.P., Varsani A.,
RA Alfenas-Zerbini P., Mizubuti E.S., Zerbini F.M.;
RT "Brazilian begomovirus populations are highly recombinant, rapidly
RT evolving, and segregated based on geographical location";
RL J. Virol. 87(10):5784-5799(2013).
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RN [2]
RP 1-2565
RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T.M., Silva F.N., Xavier C.A.D.,
RA Hora-Junior B.T., Beserra-Junior J.E.A., Malta A.W.O., Martin D.P.,
RA Varsani A., Alfenas-Zerbini P., Mizubuti E.S.G., Zerbini F.M.;
RT ;
RL Submitted (26-FEB-2013) to the INSDC.
RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n,
RL Vicosa, MG 36570-000, Brazil
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CC ##Assembly-Data-START##
CC Assembly Method :: DNAman v. 7
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .2565
FT /organism="Tomato chlorotic mottle virus"
FT /segment="DNA-B"
FT /host="Solanum lycopersicum"
FT /isolate="BR:Flo197:08"
FT /mol_type="genomic DNA"
FT /country="Brazil"
FT /collection_date="2008"
FT /db_xref="taxon:172391"
FT CDS 403. .1221
FT /codon_start=1
FT /product="nuclear shuttle protein"
FT /note="NSP"
FT /protein_id="AGH29740.1"
FT /translation="MRLIWIIIKRPVRILNMYFNTNKRRWLSTNRRNYVRYPTFKKSHS
FT VVRNDGKRRLGISNKPHDDSKMSSHTIHENQYGPDFVLGHNTAISTFITYPSLGKSEPN
FT RIKSYIKLKRLRFKGTVKIERVPTDLNMNGLPAKIEGVFSLVIVVDRKPHLSPSGSLYT
FT FDELFGARIHSHGNLAIIPSLKDRFYIRHVAKRVLSVEKDSNMIDVAGTTTLSSRRYNC
FT WANFRDFDHESCNGVYANISNNALLVYYCWMSETVSKASTFVSFDLDYIG"
FT CDS complement(1312. .2193)
FT /codon_start=1
FT /product="movement protein"
FT /note="MP"
FT /protein_id="AGH29739.1"
FT /translation="MSSQLVIPPNAFNYVESQRDEYQLSHDLTEIVLQFPSTASQISAK
FT LSRSCMKIDHCVIEYRQQVPINATGTVIVEIHDKRMTDNESLQASWTFPIRCNIDLHYF
FT SSSFFSLKDPIPWKLYYRVSDTNVHQRTHFAKFKGKLKLSTAKHSVDIPFRAPTVKILS
FT KQFSDKDIDFVHVGYGTWERKLVRCASTSRFGLNCPIEIKPGESWASRSTIGLSNSCVD
FT SERRNDLYPYKDLNRLDTLILDPGESASIVAAQRTQSNITLSLAQLNEIVKSTVQECIN
FT TNCTPSEPKSLK"
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SQ Sequence 2565 BP; 740 A; 472 C; 519 G; 834 T; 0 other;
kc706563 Length: 2565 12-MAY-2013 Type: N Check: 8310 ..
1 accggatggc cgcgcgattt ttctccctct tttaatcctg tccgtccacg
51 tgtttaatga atttagttga gcgcgaattt gaagtccgtg aattgtgttg
101 agcgctttat ttgagttccg ctaacggatg accgccacgt gtattaatat
151 aagaccgttg aattaaatat gataagcgga actttctcga atttcgcatt
201 gggtttttta ttgctgatta gttatgaaat tcgaccgtca gattgcacat
251 gatattgacg tgttgatatc gtgattgaat aatgtgtcat ttgtacaagt
301 atttgttctg ggtgcaatca taaaacatat gtaacgtgga ccaattaaat
351 atttactata taaccaagat aacccattga tgcagtcaca gctatctata
401 taatgcgatt gatatggata attataaaac gtccagtaag aattttgaac
451 atgtatttta atactaataa gcgtcgttgg ttatccacca accgtcgtaa
501 ttacgtgcga tatcctacgt ttaaaaagtc acattctgtg gtacgcaatg
551 atgggaaacg tcgactgggt atttcaaaca agccccacga cgatagtaag
601 atgtcttcgc atacgattca tgaaaaccaa tatgggcctg actttgtatt
651 gggccataat acagcgatat ccacgtttat aacttacccc tctcttggta
701 aaagtgagcc caatcgtatt aagtcataca ttaagctgaa acgtctgcgt
751 tttaaaggta ctgttaagat tgaacgtgtt cccaccgatt tgaacatgaa
801 tggattacct gctaagattg aaggagtatt ttctttggtt attgttgtcg
851 atcgtaaacc tcatttgagt ccttctggaa gtctctacac cttcgatgag
901 ttatttggtg ctaggatcca tagccatgga aatttagcga taatcccgtc
951 tctgaaggat cgtttttaca tacgtcatgt tgctaaacgt gtcttgtcag
1001 tggagaagga tagtaatatg attgacgttg ctgggactac aacactctct
1051 agtaggcgtt ataattgctg ggcaaatttt agagatttcg atcatgaatc
1101 ctgtaacggt gtatatgcta acataagcaa taacgcccta ctagtttatt
1151 attgttggat gtcggaaaca gtttccaaag catctacatt tgtatcattt
1201 gatcttgatt atattggata attatataga ttaactcgca aattatatat
1251 ttgataagtt aaaatatgat aataaattgt acattctgtt aaacactcag
1301 caaagcttaa tttattttaa agactttggt tcagatggag tacaattggt
1351 attaatacat tcttggactg tcgacttaac aatctcgttt aattgggcca
1401 acgataatgt aatgttggac tgcgtcctct gtgccgcaac gattgacgct
1451 gattctccgg ggtctagaat taacgtgtcc aatctgttca agtccttata
1501 tggatataga tcgttgcgcc gttcggagtc cacacatgaa ttgctgagac
1551 caattgtact tctggaggcc caggactctc caggtttaat ttctattggg
1601 cagttaagcc caaatctgga cgtcgaagcg catctgacta atttcctctc
1651 ccacgtcccg taacccacgt gaacaaaatc gatatcctta tctgaaaatt
1701 gcttcgacaa tattttaact gtcggtgccc ggaaagggat atctactgag
1751 tgttttgctg tggatagttt taacttgccc ttgaacttgg cgaaatgtgt
1801 cctttggtgc acattcgtat cgctaacccg gtagtacaat ttccaaggaa
1851 ttgggtcctt cagggaaaag aatgacgacg agaaataatg taagtctatg
1901 ttacatctaa ttgggaaggt ccatgacgcc tgcaatgact cgttgtccgt
1951 cattctcttg tcatgtattt ctactatgac ggttcctgtg gcgtttatcg
2001 ggacttgctg tctgtattcg atgacgcaat gatctatttt catgcagctc
2051 cgactgagtt tagcactaat ttgagatgcc gtagatggaa attgtaaaac
2101 aatttcagtt agatcatgag acaattgata ttcatctctt tgagactcaa
2151 cataattaaa agcatttgga gggataacca actgagaact cattataata
2201 aaaaaaggct gcgcagctga atcgataact ggaattgata agcgtaattg
2251 atatgaaccc actaagaaca atgtcaaaag acaatataat ttgtttatga
2301 tgatagtcag tactaactgg tttgtattta tagacgattt gaatcctcgg
2351 tatatacgag gaaacacttc ttagcgacgt cgttttttaa ctgaatgtat
2401 ccctatgtat tttagcaatg gcatatctgt aataatagtt gggcaccgat
2451 tggggtcttc tcaaacttac taaagcaatt ggggactggg gtcttatata
2501 tactagaacc ctctatagaa ctttcaatct cgttcacaca cgtggcggcc
2551 atccgatata atatt