Sequence of DPV Tomato chlorotic mottle virus
Tomato chlorotic mottle virus isolate BR:Car217.1:08 segment DNA-B, complete sequence.
ACC No: KC706564
Dated: 2013-05-12 | Length: 2557 | CRC: -1098989357
ID KC706564; SV 1; circular; genomic DNA; STD; VRL; 2557 BP.
XX
AC KC706564;
XX
DT 24-MAR-2013 (Rel. 116, Created)
DT 12-MAY-2013 (Rel. 116, Last updated, Version 2)
XX
DE Tomato chlorotic mottle virus isolate BR:Car217.1:08 segment DNA-B,
DE complete sequence.
XX
KW .
XX
OS Tomato chlorotic mottle virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2557
RX PUBMED; 23487451.
RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T., Silva F.N., Xavier C.A.,
RA Hora-Junior B.T., Beserra-Junior J.E., Malta A.W., Martin D.P., Varsani A.,
RA Alfenas-Zerbini P., Mizubuti E.S., Zerbini F.M.;
RT "Brazilian begomovirus populations are highly recombinant, rapidly
RT evolving, and segregated based on geographical location";
RL J. Virol. 87(10):5784-5799(2013).
XX
RN [2]
RP 1-2557
RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T.M., Silva F.N., Xavier C.A.D.,
RA Hora-Junior B.T., Beserra-Junior J.E.A., Malta A.W.O., Martin D.P.,
RA Varsani A., Alfenas-Zerbini P., Mizubuti E.S.G., Zerbini F.M.;
RT ;
RL Submitted (26-FEB-2013) to the INSDC.
RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n,
RL Vicosa, MG 36570-000, Brazil
XX
CC ##Assembly-Data-START##
CC Assembly Method :: DNAman v. 7
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
XX
FH Key Location/Qualifiers
FH
FT source 1. .2557
FT /organism="Tomato chlorotic mottle virus"
FT /segment="DNA-B"
FT /host="Solanum lycopersicum"
FT /isolate="BR:Car217.1:08"
FT /mol_type="genomic DNA"
FT /country="Brazil"
FT /collection_date="2008"
FT /db_xref="taxon:172391"
FT CDS 452. .1222
FT /codon_start=1
FT /product="nuclear shuttle protein"
FT /note="NSP"
FT /protein_id="AGH29742.1"
FT /translation="MYFNNNKRRWLSTNRRNYVRYSTFKRSHSVVRNDGKRRLGISNKP
FT HDDSKMSSHRIHENQYGPDFVLGHNTAISTFITYPSLGKSEPNRIKSYIKLKRLRFKGT
FT VKIERVPTDLNMNGFPAKIDGVFSLVIVVDRKPHLSPSGSLYTFDELFGARIHSHGNLA
FT IIPSLKDRFYIRHVAKRVLSVEKDSNMIDVEGTTTLSSRRYNCWANFRDFDHESCNGVY
FT ANISKNALLVYYCWMSETVSKASTFVSFDLDYIG"
FT CDS complement(1304. .2185)
FT /codon_start=1
FT /product="movement protein"
FT /note="MP"
FT /protein_id="AGH29741.1"
FT /translation="MSSNLVVPPNAFNYVESQRDEYQLSHDLTEIVLQFPSTASQISAK
FT LSRSCMKIDHCVIEYRQQVPINATGSVIVEIHDKRMTDNESLQASWTFPIRCNIDLHYF
FT SSSFFSLKDPIPWKLYYRVSDTNVHQRTHFAKFKGKLKLSTAKHSVDIPFRAPTVKILS
FT KQFSDKDIDFVHVGYGTWERKLVRCASTSRFGLNCPIEIKPGESWAYRSTIGLSSSCVD
FT SERGNDLHPYKELNRLDTLILDPGESASIVAAQRTQSNITLSLAQLNEIVKSTVQECIN
FT TNCTPSEPKSLK"
XX
SQ Sequence 2557 BP; 733 A; 455 C; 516 G; 853 T; 0 other;
kc706564 Length: 2557 12-MAY-2013 Type: N Check: 2742 ..
1 accggatggc cgcgcgatcg ttctctctct tttgatcctg tccgtccacg
51 tgtttaatga atttagttga gcgcgaattt gaagtccgtg aattgtgttg
101 agcgctttat ttgagttccg ctaacggatg atcgccacgt gtattaatat
151 aagaccgttg aattaaatat gataagcgga actttttcga atttcgcatt
201 gtgtttttta gtgctgatta attatgaaat tcgaccgtta gattgcacac
251 gatagtgacg tattggtcat cgtgattgaa tactgtgtca ttagtacaag
301 tatttgttct agggtgcaat cataaaacat atgtaacgtg gaccagttaa
351 atattgtctg tataaccaag ataacccatt gatccaatta ctactatcta
401 tataatgaga ttgatatttt aattttaaaa catgcaataa gaattttgaa
451 catgtatttt aataataata agcgtcgttg gttgtccacc aaccgtcgta
501 attacgtgcg atattctacg tttaaaaggt cacattctgt ggtacgcaat
551 gatgggaaac gtcgattagg tatttcaaac aaaccccatg acgatagtaa
601 gatgtcttcg cataggattc atgaaaacca atatgggcct gactttgtat
651 tgggccacaa cacagcgata tccacgttta taacttaccc atctcttggt
701 aaaagtgagc ccaatcgtat taagtcgtac attaagctga aacgtctgcg
751 ctttaaaggt actgttaaga ttgaacgtgt tcctaccgat ttgaacatga
801 atggatttcc tgctaagatt gatggagtat tttctttggt tattgttgtc
851 gatcgtaaac ctcatttgag tccttctgga agtctctaca cattcgatga
901 gttatttggt gctaggatcc atagccatgg aaatttagcg ataatccctt
951 ctctgaagga tcgtttttac atacgtcatg ttgctaaacg tgtcttgtca
1001 gtggagaagg atagtaatat gattgacgtt gaggggacta caacactgtc
1051 tagtaggcgt tataattgct gggcaaattt tagagatttc gatcatgaat
1101 cttgtaatgg tgtatatgct aacataagca agaatgccct attagtttat
1151 tattgttgga tgtcggaaac agtttccaaa gcatctacat ttgtatcatt
1201 tgatctcgat tatattggat aattatttgt aaattatata ttcgataagt
1251 taaaatatgt taataaattg tcctattcta ttaaacactc aggaaagctt
1301 aatttatttt aaagactttg gttcagatgg agtacaattg gtattgatac
1351 attcttggac tgtcgactta acaatctcat ttaattgggc caacgataag
1401 gtaatgttgg actgcgtcct ctgtgctgca acgattgacg ctgattctcc
1451 ggggtctaga attaacgtgt ccaatctgtt cagctcttta tatggatgta
1501 gatcgttgcc ccgttcggag tccacacatg aactgctgag accaattgta
1551 cttctgtatg cccatgactc tccaggttta atttctattg ggcagttaag
1601 cccaaatctg gatgtcgaag cgcatctgac taatttcctc tcccatgtcc
1651 cgtaacccac atgaacaaaa tcgatatcct tatctgaaaa ctgcttcgac
1701 aatattttaa ctgttggtgc ccggaaaggg atatctactg agtgttttgc
1751 tgtggatagt tttaacttgc ccttgaattt ggcgaaatgg gtcctttggt
1801 gcacattcgt atcgctaacc cggtagtata atttccatgg tattgggtcc
1851 ttcagggaaa agaatgacga cgagaaataa tgtaaatcta tgttacatct
1901 aattgggaag gtccatgacg cttgcaatga ctcgttgtcc gtcattctct
1951 tgtcatgtat ttctactatg acagatcctg tggcgtttat cgggacttgc
2001 tgtctgtatt cgatgacgca atgatctatt ttcatgcagc tccgactaag
2051 tttagcacta atttgagatg ccgtagatgg aaattgtaga acaatttcag
2101 ttagatcatg agacaattga tattcatctc tttgagactc aacataatta
2151 aaagcatttg gagggacaac caaattagaa ctcattataa taaaaaaagg
2201 ctgcgcagct gaatcgataa ctggaattaa taagcttaaa tgatatgaat
2251 tcactaagca gaatgtcaga agacaatata atttgtttat gatgatagtc
2301 agtactaact ggtctgtatt tatagacgga ttgaatcctg agtttatacg
2351 aggtaccact tcttagcgac gtcgtttttt aactgaatgc atccttgtaa
2401 atttaagcaa tggcatattt gtaataatag ttgggcaccg attggggtct
2451 tctcaaactc tctctagcaa ttggggactg gggtcctata tatactagaa
2501 ccctctatag aactttcaat ctcgttcaca cacgtggcgg ccatcctata
2551 taatatt