Sequence of DPV Tomato common mosaic virus
Tomato common mosaic virus isolate BR:Coi8:07 segment DNA-A, complete sequence.
ACC No: KC706579
Dated: 2013-05-12 | Length: 2560 | CRC: -565794328
ID KC706579; SV 1; circular; genomic DNA; STD; VRL; 2560 BP.
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AC KC706579;
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DT 24-MAR-2013 (Rel. 116, Created)
DT 12-MAY-2013 (Rel. 116, Last updated, Version 2)
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DE Tomato common mosaic virus isolate BR:Coi8:07 segment DNA-A, complete
DE sequence.
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KW .
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OS Tomato common mosaic virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RP 1-2560
RX PUBMED; 23487451.
RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T., Silva F.N., Xavier C.A.,
RA Hora-Junior B.T., Beserra-Junior J.E., Malta A.W., Martin D.P., Varsani A.,
RA Alfenas-Zerbini P., Mizubuti E.S., Zerbini F.M.;
RT "Brazilian begomovirus populations are highly recombinant, rapidly
RT evolving, and segregated based on geographical location";
RL J. Virol. 87(10):5784-5799(2013).
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RN [2]
RP 1-2560
RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T.M., Silva F.N., Xavier C.A.D.,
RA Hora-Junior B.T., Beserra-Junior J.E.A., Malta A.W.O., Martin D.P.,
RA Varsani A., Alfenas-Zerbini P., Mizubuti E.S.G., Zerbini F.M.;
RT ;
RL Submitted (01-MAR-2013) to the INSDC.
RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n,
RL Vicosa, MG 36570-000, Brazil
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CC ##Assembly-Data-START##
CC Assembly Method :: DNAman v. 7
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .2560
FT /organism="Tomato common mosaic virus"
FT /segment="DNA-A"
FT /host="Solanum lycopersicum"
FT /isolate="BR:Coi8:07"
FT /mol_type="genomic DNA"
FT /country="Brazil"
FT /collection_date="2007"
FT /db_xref="taxon:536084"
FT CDS 153. .908
FT /codon_start=1
FT /product="coat protein"
FT /note="CP"
FT /protein_id="AGH29805.1"
FT /translation="MPKRDAPWPHRAPSTKISRSANFSPRSGTGPGPSKAAEWVNRPMY
FT RKPRIYRTMRTPDVPRGCEGPCKVQSYEQRHDISHTGKVMCISDVTRGNGITHRVGKRF
FT CVKSVYILGKIWMDENIKLKNHTNSAMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV
FT KNDLRDRFQVMHKFYAKVTGGQYASNEQALVKRFWRVNNHVVYNHQEAGKYENHTENAL
FT LLYMACTHASNPVYATLKIRIYFYDSITN"
FT CDS complement(905. .1303)
FT /codon_start=1
FT /product="replication-enhancer protein"
FT /note="REN"
FT /protein_id="AGH29806.1"
FT /translation="MDSRTGERITVRQAENGVYIWELTNPLYFKMYQVEDIRYTRTRVY
FT HVQIRFNHNLRRALGLHKAFLNFQVWTTSLTASGTTYLNRFKYLVMLYIDQLGVISVNN
FT VIRAVRFATDRSYVNAVLENHSIKFKLY"
FT CDS complement(1050. .1436)
FT /codon_start=1
FT /product="transactivating protein"
FT /note="TRAP"
FT /protein_id="AGH29808.1"
FT /translation="MLNSSSSTPPSIKLRHRIAKRAPRRRRIDLNCGCSLYVNLNCSNY
FT GFTHRGTHHCASGREWRLYMGANKSPLFQDVPSRGHPVHQDQSVPCPNKVQPQPEESTG
FT SPQGISQLPSLDDIPDSFWDDLLK"
FT CDS complement(1360. .2427)
FT /codon_start=1
FT /product="replication-associated protein"
FT /note="REP"
FT /protein_id="AGH29807.1"
FT /translation="MPRNPNIFRLTARNIFLTYPQCDIPKDEALQMLQSLPWSVVKPTY
FT IRVAREEHSDGFPHLHCLVQLSGKSNIKDVRFFDLTHPRRSTGFHPNVQAAKDTNAVKN
FT YITKEGDYCESGQYKVSGGTKANKDDVYHNAVNASSPGEALDIIRTGDPKTFLVNYHNV
FT KANLERIFQKAPAPWVPPFPLSSFTNVPDEMQEWADDYFGRDAAARPIRPISIVIEGNS
FT RTGKTMWARALGPHNYLSGHLDFNSRVYSNDVLYNVIDDVSPHYLKLKHWKELIGAQID
FT WQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLAKEENASLKSWTLHNAKFIILNSP
FT LYQTTAQDCEESTST"
FT CDS complement(1938. .2207)
FT /codon_start=1
FT /product="AC4 protein"
FT /note="AC4"
FT /protein_id="AGH29804.1"
FT /translation="MLGFSTSLTPDGLPDFTQMFRQPKTPMQSRITSPKKVIIVNPDST
FT RCLGEQRQIKTTCTTTPSMHLLRERLSTLSGPETPRLSSSTITM"
XX
SQ Sequence 2560 BP; 661 A; 553 C; 614 G; 732 T; 0 other;
kc706579 Length: 2560 12-MAY-2013 Type: N Check: 4585 ..
1 actggatggc cgcgcaaaaa tttggacttg ggccgctttt tctggcccaa
51 ttagaacagg cctgacgagc ttagatattt gtaacaactt agagcccaag
101 ttgtataacg gctataaatt gaatctctat gttatttgaa ctttaatttg
151 aaatgcctaa gcgcgatgcc ccatggcccc acagggcacc ttcgacgaag
201 attagccgtt cagctaattt ctcccctcgt tcgggaactg ggcctgggcc
251 tagcaaagcc gctgaatggg tgaataggcc catgtacagg aagcccagga
301 tatacagaac tatgagaacg cccgacgttc ctagaggctg tgaaggccca
351 tgtaaggtcc agtcctacga gcaacgccac gatatttccc atactgggaa
401 ggtgatgtgc atatcagacg tcacacgtgg caacggaatt acccaccgtg
451 tcggtaagcg tttctgcgtt aagtctgtgt atattctagg aaagatttgg
501 atggacgaga acatcaagtt gaaaaaccat acgaacagtg ctatgttctg
551 gttggtcaga gaccgaagac catatggcac ccctatggat tttggccaag
601 tgttcaacat gtttgacaac gagcccagca ctgcaaccgt gaagaacgat
651 ctacgtgatc gtttccaggt tatgcataag ttctatgcca aggtcacggg
701 tggacaatat gctagcaatg agcaggcgct ggtcaagcgg ttctggaggg
751 tcaacaatca tgtggtctac aatcatcaag aagccgggaa gtatgagaat
801 cacacggaga acgcgctgtt attgtatatg gcatgtactc atgcctctaa
851 ccctgtatat gcaactttaa aaattcggat ctatttttat gattcgataa
901 caaattaata taatttaaat tttattgaat gattttcaag tacagcattt
951 acatatgatc tgtctgttgc aaagcgaaca gctctaatta cattattaac
1001 tgaaatgact cctaactgat caatatacaa cattactaaa tatttaaatc
1051 tatttaagta agtcgtccca gaagctgtca gggatgtcgt ccagacttgg
1101 aagttgagaa atgccttgtg gagacccagt gctctcctca ggttgtggtt
1151 gaaccttatt tggacatggt acactctggt cctggtgtac cggatgtcct
1201 ctacttggta catcttgaaa taaaggggat ttgttagctc ccatatatag
1251 acgccattct ctgcctgacg cacagtgatg cgttcccctg tgcgtgaatc
1301 catagttact gcagttgagg ttgacgtaca aagagcagcc acagtttagg
1351 tctatccttc tacgtcgagg tgctctcttc gcaatcctgt gccgtagttt
1401 gatagagggg ggagttgagg atgatgaatt tagcattatg gagtgtccac
1451 gacttgagag atgcgttttc ctctttggct aggaaatctt tatagctggc
1501 cccctctcca ggattgcaga gcacgattga tgggataccc cctttaattt
1551 gaactggctt tccgtactta caatttgatt gccaatctat ttgggcccca
1601 atcaattctt tccagtgctt taactttaag taatgcggag agacgtcatc
1651 aatgacgtta tacagtacat cgtttgagta aaccctagaa ttgaaatcca
1701 ggtgtccact tagatagtta tgtgggccaa gtgcacgcgc ccacatcgtc
1751 ttccccgtcc gactattacc ctcgatgaca atacttatag gtctgatagg
1801 ccgcgcagcg gcatcccttc caaaataatc atcagcccat tcttgcatct
1851 cgtcgggcac gttagtgaat gaggagaggg gaaacggagg aacccacggt
1901 gccggagctt tttggaagat cctctctaga ttagccttca cattgtgata
1951 gttgacgagg aaagtcttgg ggtctccggt cctgataatg tcgagagcct
2001 ctcccggaga agatgcattg acggcgttgt ggtacacgtc gtctttattt
2051 gcctttgttc ccccagacac cttgtactgt ccggattcac aataatcacc
2101 ttctttggtg atgtaattct tgactgcatt ggtgtctttg gctgcctgaa
2151 catttgggtg aaatccggta gaccgtctgg ggtgagtgag gtcgaaaaac
2201 ctaacatcct tgatattcga ttttccggag agttggacaa gacagtgaag
2251 atgggggaat ccgtcggagt gttcctctct ggcgactcgt atatatgtgg
2301 gtttgacgac tgaccatgga agagattgaa gcatttgaag agcttcatct
2351 tttggtatat cgcactgtgg atatgtgaga aatatgtttc tcgccgttaa
2401 tctgaatata ttagggttcc gtggcatttt tgtaaatata ggtgaggaca
2451 ccagggattg ctctcaactt ctgtgctatt tgctggtgtc ctggtgtccc
2501 atttatacta gaactctcta gggtaatctc aggggcaaaa gcggccatcc
2551 atataatatt