Sequence of DPV Tomato mild mosaic virus
Tomato mild mosaic virus isolate BR:Vic17.2:10 segment DNA-A, complete sequence.
ACC No: KC706607
Dated: 2013-05-12 | Length: 2707 | CRC: -766381490
ID KC706607; SV 1; circular; genomic DNA; STD; VRL; 2707 BP.
XX
AC KC706607;
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DT 24-MAR-2013 (Rel. 116, Created)
DT 12-MAY-2013 (Rel. 116, Last updated, Version 2)
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DE Tomato mild mosaic virus isolate BR:Vic17.2:10 segment DNA-A, complete
DE sequence.
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KW .
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OS Tomato mild mosaic virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RP 1-2707
RX PUBMED; 23487451.
RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T., Silva F.N., Xavier C.A.,
RA Hora-Junior B.T., Beserra-Junior J.E., Malta A.W., Martin D.P., Varsani A.,
RA Alfenas-Zerbini P., Mizubuti E.S., Zerbini F.M.;
RT "Brazilian begomovirus populations are highly recombinant, rapidly
RT evolving, and segregated based on geographical location";
RL J. Virol. 87(10):5784-5799(2013).
XX
RN [2]
RP 1-2707
RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T.M., Silva F.N., Xavier C.A.D.,
RA Hora-Junior B.T., Beserra-Junior J.E.A., Malta A.W.O., Martin D.P.,
RA Varsani A., Alfenas-Zerbini P., Mizubuti E.S.G., Zerbini F.M.;
RT ;
RL Submitted (15-FEB-2013) to the INSDC.
RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n,
RL Vicosa, MG 36570-000, Brazil
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CC ##Assembly-Data-START##
CC Assembly Method :: DNAman v. 7
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .2707
FT /organism="Tomato mild mosaic virus"
FT /segment="DNA-A"
FT /host="Sida urens"
FT /isolate="BR:Vic17.2:10"
FT /mol_type="genomic DNA"
FT /country="Brazil"
FT /collection_date="2010"
FT /db_xref="taxon:536086"
FT CDS 301. .1050
FT /codon_start=1
FT /product="coat protein"
FT /note="CP"
FT /protein_id="AGH29900.1"
FT /translation="MPKRDAPWRLMAGTSKVSRSVNYSPRGGPKFNKASEWVNRPMYRK
FT PRIYRTLRSPDVPKGCEGPCKVQSFEARHDVSHVGKVICVSDVTRGNGITHRVGKRFCV
FT KSVYILGKIWMDEAIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNLFDNEPSTATVKS
FT DLRDRFQVMRKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAAKYENHTENAMLL
FT YMACTHASNPVYASLKIRIYFYDSVLN"
FT CDS complement(1047. .1445)
FT /codon_start=1
FT /product="replication-enhancer protein"
FT /note="REN"
FT /protein_id="AGH29901.1"
FT /translation="MDSRTGESITAPQAENGVYIWEISNPLYFKIYNVEDLRYTATRVY
FT HVQIRFNHNLRRMLGLHKAFLNFQVWTTSVRASGTTYLHRFRQLVMLYLDQLGVISLNN
FT VIRAVRFATNKPYVNYVLENHSIKFKFY"
FT CDS complement(1192. .1581)
FT /codon_start=1
FT /product="transactivating protein"
FT /note="TRAP"
FT /protein_id="AGH29903.1"
FT /translation="MLNSSSSTPPSIKPKHRIAKKRATRRRRIDLDCGCSVFVHLNCAG
FT HGFTHRGEHHCTSGREWRIYLGDIKSPLFQDIQRRGSTVHGDQGVPRPDTVQPQPQEDA
FT GSTQGLPELPSLDDISSSFWDDIFT"
FT CDS complement(1493. .2578)
FT /codon_start=1
FT /product="replication-associated protein"
FT /note="REP"
FT /protein_id="AGH29902.1"
FT /translation="MPPPKRFRINAKNYFLTYPKCSLTKEEALSQLLALEIPSQKKFIK
FT VARELHDDGEPHLHVLIQFEGKFQCTNNRFFDLVSPTRSAHFHPNVQGAKSSSDVKSYV
FT DKDGDTVEWGIFQVDGRSARGGCQTANDAAAEALNAPSKEAALAIIREKLPEKYLFQFH
FT NLNSNLDRIFAKAPETWSPPFPLSSFTHVPDEMQEWADDYFGRDAAARPIRPVSLIVEG
FT DSRTGKTMWARALGAHNYLSGHLDFNSRVYSNEAEYNVIDDVPPHYLKLKHWKELMGAQ
FT KDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLEKEENLALKNWTIKNVKFIFLD
FT APLYQTQAQDCEEEGYQTTQN"
FT CDS complement(2164. .2421)
FT /codon_start=1
FT /product="AC4 protein"
FT /note="AC4"
FT /protein_id="AGH29899.1"
FT /translation="MGSLISTSSSSSKGNSSARIIDSSTLSPQPGQHISIRTFRGLSRR
FT PTSSPMSTRTEIQSNGEFSRSTEEVLEEVARQLTTLPQRP"
XX
SQ Sequence 2707 BP; 656 A; 634 C; 669 G; 748 T; 0 other;
kc706607 Length: 2707 12-MAY-2013 Type: N Check: 4470 ..
1 accagatggc cgcgattttt tgcacaccta cgtggcgctc tggaggacgg
51 gcgatctccc ctaggttgcc ccccccagcc acccctgtcg ggcgctcaat
101 tcgttgagcg cttttttgga gtccgcgaaa tgggttcagc gcattttttg
151 agttccgccg tttaacttta atttaaatta aagccttgac caatcatttc
201 gcgtctgacg agtttattta gcctaagaga acttaacaac gaagttgttg
251 accaaccgtt ataaattaac tttgatggga ctcgtcagtt ttaactcaga
301 atgccgaagc gggacgcccc atggcgcctg atggcgggaa cctcaaaggt
351 tagccgttct gtcaactatt cccctcgtgg aggcccaaag ttcaacaagg
401 catctgagtg ggtcaacagg cccatgtata gaaagcccag gatatatcgg
451 acgctcagat cacctgacgt ccctaaggga tgtgaagggc cttgtaaggt
501 ccagtcgttc gaggcgcgac atgatgtctc tcatgtcggg aaggtcatat
551 gcgtctctga cgttacacgt ggtaatggta ttacccatcg tgtgggtaag
601 cgtttttgtg tcaagtccgt gtacatatta gggaagatct ggatggatga
651 agcgatcaag ctcaagaacc acacgaacag cgtcatgttc tggttagtca
701 gagacaggag accctacggc acccctatgg attttggaca ggtgttcaac
751 ctgttcgaca acgagcccag cactgccact gttaagagcg atctccgtga
801 tcgcttccaa gtgatgcgca agttttacgc caaggtcaca ggtggacagt
851 atgctagcaa cgagcaggct ttggtcaagc gtttctggaa ggtcaacaat
901 catgtggtct acaaccatca agaggctgcg aagtacgaga accacacgga
951 gaacgctatg ttattgtata tggcatgtac ccatgcctct aaccctgtgt
1001 atgcgagtct gaagattcga atctacttct acgattcggt tctcaattaa
1051 taaaatttaa attttattga atgattttcc agtacatagt ttacatatgg
1101 tttgtttgtt gcaaaccgaa cagccctaat gacattatta agggagatca
1151 cacctaattg atcgagatac aacataacta actgcctaaa cctatgtaaa
1201 tatgtcgtcc cagaagctcg aactgatgtc gtccagactt ggaagttcag
1251 gaaggccttg tgtagaccca gcatcctcct gaggttgtgg ttgaaccgta
1301 tctggacgtg gtacaccctg gtcgccgtgt accgtagatc ctctacgttg
1351 tatatcttga aatagagggg atttgatatc tcccagatat atacgccatt
1401 ctctgcctga ggtgcagtga tgctctcccc ggtgcgtgaa tccatgccct
1451 gcgcagttaa ggtgcacgaa gaccgagcac ccgcagtcta ggtcaattct
1501 gcgtcgtctg gtagccctct tcttcgcaat cctgtgcttg ggtttgatag
1551 aggggggcgt cgaggaagat gaatttaaca ttcttgatcg tccagttctt
1601 cagagcaagg ttttcctctt tctcgaggaa atctttatag ctggccccct
1651 ctccaggatt gcagagcacg attgatggga taccgccttt aatttgaaca
1701 ggctttccgt atttgcaatt tgactgccag tccttttgag ctcccatcaa
1751 ttctttccag tgctttagct ttaggtagtg cggagggacg tcatcaatga
1801 cgttatattc agcctcattt gaatagaccc tggagttgaa gtccaggtgt
1851 ccactgagat agttatgggc ccctaaagca cgagcccaca ttgtcttgcc
1901 tgttcgacta tctccttcga ctatcaaact aacaggcctg atgggccgcg
1951 cagcggcatc tcttccaaaa tagtcatcgg cccactcttg catctcgtcg
2001 ggaacgtgag tgaatgagga gagtggaaac ggaggagacc aagtttccgg
2051 agcctttgcg aaaatgcgat ctaaattact atttagatta tggaattgga
2101 agagatactt ttccggcaac ttctctctga taatggccag cgccgcttct
2151 ttcgacggcg cgtttaaggc ctctgcggca gcgtcgttag ctgtctggca
2201 acctcctcta gcacttcttc cgtcgacctg gaaaattccc cattcgactg
2251 tatctccgtc cttgtcgaca taggacttga cgtcggacga cgacttagcc
2301 ccctgaacgt tcggatggaa atgtgctgac ctggttgggg agacaaggtc
2351 gaagaatcta ttattcgtgc actggaattt cccttcgaac tggatgagga
2401 cgtggagatg aggctcccca tcgtcgtgga gctctctagc taccttgata
2451 aatttcttct gtgaaggaat ttctagggct aataattggg aaagtgcctc
2501 ttctttggtt aggctgcatt tggggtatgt caagaaatag ttcttggcat
2551 ttattctaaa acgtttgggc ggtggcattt ttgtaataag aagggtgtac
2601 accgattgag agcctctcca aaactcatat gaatcggtgt atggtgtaca
2651 atatatagta agaagttcct aaggctaggt aacacgtggc ggccatccgt
2701 taatatt