Sequence of DPV Tomato mild mosaic virus
Tomato mild mosaic virus isolate BR:Vic14:10 segment DNA-B, complete sequence.
ACC No: KC706609
Dated: 2013-05-12 | Length: 2672 | CRC: -1117415973
ID KC706609; SV 1; circular; genomic DNA; STD; VRL; 2672 BP.
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AC KC706609;
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DT 24-MAR-2013 (Rel. 116, Created)
DT 12-MAY-2013 (Rel. 116, Last updated, Version 2)
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DE Tomato mild mosaic virus isolate BR:Vic14:10 segment DNA-B, complete
DE sequence.
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KW .
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OS Tomato mild mosaic virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RP 1-2672
RX PUBMED; 23487451.
RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T., Silva F.N., Xavier C.A.,
RA Hora-Junior B.T., Beserra-Junior J.E., Malta A.W., Martin D.P., Varsani A.,
RA Alfenas-Zerbini P., Mizubuti E.S., Zerbini F.M.;
RT "Brazilian begomovirus populations are highly recombinant, rapidly
RT evolving, and segregated based on geographical location";
RL J. Virol. 87(10):5784-5799(2013).
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RN [2]
RP 1-2672
RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T.M., Silva F.N., Xavier C.A.D.,
RA Hora-Junior B.T., Beserra-Junior J.E.A., Malta A.W.O., Martin D.P.,
RA Varsani A., Alfenas-Zerbini P., Mizubuti E.S.G., Zerbini F.M.;
RT ;
RL Submitted (15-FEB-2013) to the INSDC.
RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n,
RL Vicosa, MG 36570-000, Brazil
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CC ##Assembly-Data-START##
CC Assembly Method :: DNAman v. 7
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .2672
FT /organism="Tomato mild mosaic virus"
FT /segment="DNA-B"
FT /host="Sida urens"
FT /isolate="BR:Vic14:10"
FT /mol_type="genomic DNA"
FT /country="Brazil"
FT /collection_date="2010"
FT /db_xref="taxon:536086"
FT CDS 519. .1289
FT /codon_start=1
FT /product="nuclear shuttle protein"
FT /note="NSP"
FT /protein_id="AGH29920.1"
FT /translation="MYPVKYRRGWSTTQRRSHPRTPVFKRFYGVKRADGKRRPSNSMKA
FT HDEPKMTAQRIHENQFGQEFMMVQNTAISTYISFPNLGKTEPNRSRSYIKLKRLRFKGT
FT VKIERVQPDVNMDGSVPKTEGVFSLVVVVDRKPHLGPSGCLHTFDELFGARIHSHGNLS
FT ITPSLKDRYYIRHVTKHVLSAEKDTMMVNLEGTTSLSNRRVSCWAGFKDHDHDSCNGVY
FT ANISKNALLVYYCWMSDIMSKASTFVSYDLDYIG"
FT CDS complement(1351. .2232)
FT /codon_start=1
FT /product="movement protein"
FT /note="MP"
FT /protein_id="AGH29919.1"
FT /translation="MESQLANPPNAFNYIESQRDEYQLSHDLTEIVLQFPSTASQISAR
FT LSRSCMKIDHCVIEYRQQVPINATGAVVVEIHDKRMTDNESLQASWTFPIRCNIDLHYF
FT SSSFFSLKDPIPWKLYYRVCDTNVHQRTHFAKFKGKLKLSTAKHSVDIPFRAPTVKILS
FT KQFTDKDVDFCHVGYGRWERKPVRSASASTIGLRSPIQLRPGESWAVRSTVGANPSDAE
FT SDIIETSHPYRELNRLGTTMLDPGESASIVGAQRAQSNITMSLGQLNELLRNTVQECIN
FT SNCVPSQAKSLN"
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SQ Sequence 2672 BP; 707 A; 583 C; 652 G; 730 T; 0 other;
kc706609 Length: 2672 12-MAY-2013 Type: N Check: 1398 ..
1 accggatggc cgcgcgattt tttccccccc ctacgtggcg ctctggaggt
51 cgttcgatcc gatcgaacgt gtccccactg gtgttctctc tcccctggtg
101 cccgttggat ctgctatgtt ccaaatcagt tgagcgcgtt tttggagtcc
151 gcgaaatggg ttcagcgcat tttttgagtt ccgcctattg gatgctgaca
201 cgtcgcatcc tatatatgta gacgcgcgct caactgttag ctgttgtcag
251 ttcgcgatat cagctgtaga ccgttggata aatctgacat gcaatccagc
301 tggattgcat attgcaactt gaattatttg ggcgcgactg acacaagacg
351 gccccattgt acatctccgt tagccaattg aacagctact atggtgacaa
401 gataaataat tgaatgacca ggaatttaat atttaaattc cgtctgtgag
451 gacttattac cacgtctatt tacatcagca accactgtta accaatatat
501 tagcataatt aactcagcat gtatcctgtt aagtatagac gtggctggtc
551 gactacccaa cgacgaagtc atcctcgaac cccagtgttc aagcgatttt
601 atggcgtgaa gcgtgcagat gggaaacgtc gacctagtaa ttcaatgaag
651 gcccatgacg agcccaaaat gacagcccag cggatacatg agaaccagtt
701 tgggcaagag ttcatgatgg tccagaatac agcaatttct acgtacatat
751 cctttcccaa tcttggtaag acggaaccga accggtctag gtcatatatt
801 aagctaaaac gactgcgttt taaagggact gtgaagatag aacgtgttca
851 gccagatgtc aacatggacg gttcggtccc gaaaaccgaa ggtgtgttct
901 ctctcgtagt ggttgtggat cgtaagcctc atttgggccc ttctggatgt
951 ttacacacct ttgacgagct atttggtgca aggatccaca gccatgggaa
1001 cctatctatt actccttcat tgaaggaccg ctactacata cgtcatgtga
1051 ccaaacatgt actctcggct gaaaaggaca ccatgatggt caacctcgaa
1101 gggacgacat ccctatctaa caggcgtgtt agttgttggg ccggttttaa
1151 ggaccatgat catgactcat gtaatggggt ttatgctaac ataagcaaga
1201 acgccctgtt agtttattac tgttggatgt cggatattat gtccaaggca
1251 tcgacatttg tatcctatga tctggattat atcggttgat caggaaataa
1301 taattcagta attattatta gttaacagga aatttacaat aaccatacat
1351 ttaatttaaa gacttggcct gcgaaggcac acagttactg ttaatgcact
1401 cctggaccgt gttcctcagc agctcgttta attgtcccag agacatcgtt
1451 atgttggact gggccctctg ggctccgacg atggaagccg attcacctgg
1501 gtccaacatg gttgtaccca gtctgttcag ctccctgtat ggatgcgatg
1551 tctctattat atcggattcc gcatccgatg gattggcacc tacggtgctc
1601 ctgacagccc acgactctcc tggcctaagt tgtattgggc tgcgaagccc
1651 aattgttgag gcggatgcgg atcggactgg tttcctctcc catcttccgt
1701 atcccacgtg gcagaaatcg acatccttgt cggtaaactg tttggacagg
1751 atcttgactg tcggagccct gaaaggaata tccacggagt gtttagccgt
1801 cgacagcttc agtttacctt tgaatttggc gaagtgggtc ctctgatgga
1851 cgttcgtgtc gcaaactctg tagtacagct tccatggaat tgggtctttg
1901 agggagaaga atgaagatga aaagtagtgg agatcgatgt tacacctgat
1951 cgggaaagtc cacgacgcct gtaacgactc attgtccgtc atcctcttgt
2001 cgtgaatctc cactaccacc gccccagtag cgttaatcgg aacctgctgc
2051 ctgtactcta tgacgcagtg gtcgattttc atacagctac gactgagtct
2101 ggcactgatt tgagaggcgg tggacggaaa ctgcagtacg atctcagtta
2151 ggtcatgaga cagctggtac tcgtcccttt gcgactctat ataattgaag
2201 gcgttcggag gattagctaa ctgagattcc attgtttctg attggtcgcg
2251 cagcgacagt gatcgaccaa agtgatcagc agaagagaat agctgcgaat
2301 gcgataagga attaatgttt agagaagagt aaagtgaagg agatcacaca
2351 gagaaagaag ttaattagga caattaaaca agtttaatgg ctcataagga
2401 taagaaaagg aaaaggttac agaagaatta gggatttaat tctggaagga
2451 aagagtaaag ttggggttct gatactcata tgggcgttaa ttgggagtta
2501 tatttataac taaacccggg aagggtttga tggcattctt gtaaataagg
2551 ccgtgtaccc ccaattgctc cagctccaaa actctcatga attgggggta
2601 ctgggggtca atatatagta agaagttcct aaggcttaaa aggggcacgt
2651 ggcggccatc cgctataata tt