Sequence of DPV Tomato severe rugose virus
Tomato severe rugose virus isolate BR:Car235:08 segment DNA-B, complete sequence.
ACC No: KC706625
Dated: 2013-05-12 | Length: 2569 | CRC: -926272774
ID KC706625; SV 1; circular; genomic DNA; STD; VRL; 2569 BP.
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AC KC706625;
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DT 24-MAR-2013 (Rel. 116, Created)
DT 12-MAY-2013 (Rel. 116, Last updated, Version 2)
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DE Tomato severe rugose virus isolate BR:Car235:08 segment DNA-B, complete
DE sequence.
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KW .
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OS Tomato severe rugose virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2569
RX PUBMED; 23487451.
RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T., Silva F.N., Xavier C.A.,
RA Hora-Junior B.T., Beserra-Junior J.E., Malta A.W., Martin D.P., Varsani A.,
RA Alfenas-Zerbini P., Mizubuti E.S., Zerbini F.M.;
RT "Brazilian begomovirus populations are highly recombinant, rapidly
RT evolving, and segregated based on geographical location";
RL J. Virol. 87(10):5784-5799(2013).
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RN [2]
RP 1-2569
RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T.M., Silva F.N., Xavier C.A.D.,
RA Hora-Junior B.T., Beserra-Junior J.E.A., Malta A.W.O., Martin D.P.,
RA Varsani A., Alfenas-Zerbini P., Mizubuti E.S.G., Zerbini F.M.;
RT ;
RL Submitted (26-FEB-2013) to the INSDC.
RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n,
RL Vicosa, MG 36570-000, Brazil
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CC ##Assembly-Data-START##
CC Assembly Method :: DNAman v. 7
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .2569
FT /organism="Tomato severe rugose virus"
FT /segment="DNA-B"
FT /host="Solanum lycopersicum"
FT /isolate="BR:Car235:08"
FT /mol_type="genomic DNA"
FT /country="Brazil"
FT /collection_date="2008"
FT /db_xref="taxon:158463"
FT CDS 294. .1178
FT /codon_start=1
FT /product="nuclear shuttle protein"
FT /note="NSP"
FT /protein_id="AGH29966.1"
FT /translation="MNAYLNPAFAWVYTTSIHIVQVILSKYNLYFVLSYYLNMYPIKYR
FT RGMLFNHRRAYSSNPVFKRLHGAKRSDFKRRSSNQIKSMDETKMSVQRIHENQFGPEFV
FT IGHNSAISTFITFPTLCKTVPNRCRSYIKLRRLRFKGTIKIDRVHAEVNMDGTSPMIEG
FT VFSLVVVVDRKPHLGSSGTLHSFDEIFGARIHSHGNLAIVSSLKERFYIRHVWKKVISV
FT EKDTTMVDVEGSTILSNRRFNCWSSFKDIDREACNGVYANISKNALLVYYCWMSDNVSK
FT ASTFVSFDLDYVG"
FT CDS complement(1305. .2186)
FT /codon_start=1
FT /product="movement protein"
FT /note="MP"
FT /protein_id="AGH29965.1"
FT /translation="MESQLVNPPNAFNYIESKRDEYQLSHDLTEIMLQFPSTASQLSAR
FT LSRSCMKIDHCVIEYRQQVPINAVGSVIVEIHDRRMTDNESLQASWTFPIRCNIDLHYF
FT SSSFFSLKDPIPWKLYYRVCDTNVHQSTHFAKFKGRLKLSTAKHSVDIPFRAPTVKILS
FT KQFTDKDIDFSHVGYGKWERKMIRSASISRLGLHNPLEIMPGESWAVRSTVGLSPSEAG
FT SDIENAMHPYRQLHRLGTGTLDPGDSASVIGAQRAQSNITLSMAQLNELVKAAAHECIN
FT SNCTPSQPKSLK"
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SQ Sequence 2569 BP; 737 A; 444 C; 541 G; 847 T; 0 other;
kc706625 Length: 2569 12-MAY-2013 Type: N Check: 5533 ..
1 accggatggc cgcgcgattt ttcttatcta ctacgtggcg aaatcgtgta
51 cgttgcctcg cgctttccat tttaattgag cgcattttga agtccgcgaa
101 atgagttaat tgtctttttg aaatccgctt ttgtgaatga cctttaattt
151 gaattaaagg ttggatagtc cgtattgaat aatcatttcg cttgtttatt
201 tcctgtcgtg atgtaattac aaccgttcgt taaaaatata agaaatctac
251 gacgtggact gtctaaattt catctacata gttaatttga caaatgaatg
301 catatttaaa ccccgctttc gcgtgggttt acaccacgtc tatacatatt
351 gtccaggtta ttttgtctaa gtataattta tattttgtct tatcttatta
401 tctgaacatg tatcccatta agtatagacg tggaatgttg tttaatcatc
451 gacgagctta ctcatctaat cccgtattta agcgtttaca cggagcgaaa
501 cgaagtgatt tcaagcgtcg ttcgagtaat cagattaaga gcatggatga
551 gactaaaatg tctgttcagc ggattcatga gaaccagttt ggccctgaat
601 ttgtaattgg ccacaattct gccatatcca cattcattac attccctact
651 ctttgtaaga ctgtcccgaa ccgttgtagg tcatacataa agttaagacg
701 actacgtttt aaaggaacaa tcaagattga ccgtgttcat gctgaggtga
751 atatggacgg tacaagtcca atgattgaag gagtcttctc tctggttgta
801 gtcgttgatc gcaaacctca tttgggctca tctggaactc tgcattcttt
851 tgatgagata tttggtgcaa ggattcatag ccatggtaac ctggcaatag
901 tatcctctct gaaagagcgt ttttacatac gtcacgtttg gaagaaagta
951 atatccgttg agaaggatac aaccatggtt gatgttgaag gaagtactat
1001 tttatctaac aggcgtttta attgttggtc atcctttaag gatattgacc
1051 gtgaagcatg taatggtgtt tatgcaaaca taagcaagaa cgccctgtta
1101 gtttattact gttggatgtc tgataatgtg tctaaggcat cgacatttgt
1151 atcatttgac cttgattatg ttggctaaat agtaagtgta atacgtgatt
1201 agtaataatg tttaactctc tttaataata aatacatgta cttgtatagt
1251 aataatgttc aactcgcagt aataacaaaa aaaatgtgtt taataatata
1301 gaatttattt taaagatttt ggctgtgaag gggtacagtt gctgtttata
1351 cattcatggg ccgctgcttt aacaagttcg tttaattggg ccattgaaag
1401 tgttatgttc gattgggccc gttgagcacc aattacggac gcagaatcac
1451 ctggatctaa tgtgcctgta cccagtctat gtaattgtct gtatggatgc
1501 atcgcgttct ctatatctga gcccgcctct gatgggctta agcctacagt
1551 acttctaaca gcccatgact ctccgggcat tatttcaagt gggttgtgaa
1601 ggcccaatct ggatattgag gcggatctga tcatcttcct ttcccatttg
1651 ccatagccta cgtgactgaa atcaatgtcc ttatctgtaa attgttttga
1701 aaggattttc accgttgggg cacggaaagg tatatcaacc gaatgtttag
1751 ccgtcgagag tttcagtctc cctttgaatt tagcgaagtg ggtactctgg
1801 tgaacgttcg tgtcacatac tctgtagtac aatttccatg gaattgggtc
1851 cttaagggag aagaacgacg acgaaaagta gtgaagatct atgttacatc
1901 tgataggaaa ggtccacgac gcctgtagtg attcattgtc cgtcattctt
1951 ctgtcatgaa tttcgactat aactgaacct acggcgttaa ttggtacttg
2001 ttgtctgtat tctattacgc aatggtcgat tttcatacag ctacgactaa
2051 gccttgcgct taattgagac gccgttgaag ggaattgaag cataatctcg
2101 gttagatcat gggaaagctg atattcatca cgcttagatt ctatataatt
2151 aaatgcgttg ggaggattca caagctgaga ttccattatt gaaaataggg
2201 agcgcagcga caatgtttga ggaatgttaa taagggaaga tgataatatt
2251 ttcgtcaaat gaatatatga caagaaaatt gtctgacgat ccaattgaga
2301 aattggagat gataataact aaaaaacgag gaatcaggag acgacgaatt
2351 gagagaagat attgtatatt ttaggtgtaa ttgataaata cccctctatt
2401 tgctctttaa atagaatttt caaggcaatg gcatatttgt aaatatgact
2451 actactacca attggtagct gctctaaaac tcatatgaat tggtagttat
2501 ggtagctctt atatagtaga agttccttta aggatattgc tacacgtggc
2551 ggccatccgt tataatatt