Sequence of DPV Tomato yellow vein streak virus
Tomato yellow vein streak virus isolate BR:Pda3:05 segment DNA-A, complete sequence.
ACC No: KC706641
Dated: 2013-05-12 | Length: 2561 | CRC: -519937773
ID KC706641; SV 1; circular; genomic DNA; STD; VRL; 2561 BP.
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AC KC706641;
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DT 24-MAR-2013 (Rel. 116, Created)
DT 12-MAY-2013 (Rel. 116, Last updated, Version 2)
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DE Tomato yellow vein streak virus isolate BR:Pda3:05 segment DNA-A, complete
DE sequence.
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KW .
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OS Tomato yellow vein streak virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2561
RX PUBMED; 23487451.
RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T., Silva F.N., Xavier C.A.,
RA Hora-Junior B.T., Beserra-Junior J.E., Malta A.W., Martin D.P., Varsani A.,
RA Alfenas-Zerbini P., Mizubuti E.S., Zerbini F.M.;
RT "Brazilian begomovirus populations are highly recombinant, rapidly
RT evolving, and segregated based on geographical location";
RL J. Virol. 87(10):5784-5799(2013).
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RN [2]
RP 1-2561
RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T.M., Silva F.N., Xavier C.A.D.,
RA Hora-Junior B.T., Beserra-Junior J.E.A., Malta A.W.O., Martin D.P.,
RA Varsani A., Alfenas-Zerbini P., Mizubuti E.S.G., Zerbini F.M.;
RT ;
RL Submitted (26-FEB-2013) to the INSDC.
RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n,
RL Vicosa, MG 36570-000, Brazil
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CC ##Assembly-Data-START##
CC Assembly Method :: DNAman v. 7
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .2561
FT /organism="Tomato yellow vein streak virus"
FT /segment="DNA-A"
FT /host="Solanum lycopersicum"
FT /isolate="BR:Pda3:05"
FT /mol_type="genomic DNA"
FT /country="Brazil"
FT /collection_date="2005"
FT /db_xref="taxon:55216"
FT CDS 156. .899
FT /codon_start=1
FT /product="coat protein"
FT /note="CP"
FT /protein_id="AGH30036.1"
FT /translation="MPKRDAPWRIVAGTTKVSRSSNYSPRGGIPKRDAWVNRPMYRKPR
FT IYRTLRGPDVPKGCEGPCKVQSYEQRHDISHLGKVMCISDVTRGNGITHRVGKRFCVKS
FT VYILGKIWMDENIKLKNHTNSVIFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDL
FT RDRYQVIYRFNAKVTGGQYASNEQALVRRFWKVNNHVVYNHQEAGKYENHTENALLLYM
FT ACTHASNPVYATLKIRIYFYDSISN"
FT CDS complement(896. .1294)
FT /codon_start=1
FT /product="replication-enhancer protein"
FT /note="REN"
FT /protein_id="AGH30038.1"
FT /translation="MDSRTAEPITVPQAENGVFIWEITNPLYFKITNVEDPSYTTTRIY
FT HVQIRFNHNLRKALGLHKAFLNFQVWTTSLRASGMTYLTRFRYFVLLYLNQLGIISINN
FT VIRAVRFATDKSYVSYVLENHSIKFKRY"
FT CDS complement(1041. .1430)
FT /codon_start=1
FT /product="transactivating protein"
FT /note="TRAP"
FT /protein_id="AGH30040.1"
FT /translation="MLNSSSSTPPSIKPRHRAAKQKTTRRKRIDLNCGCSIYIHINCRN
FT NGFTHRGTHHCASSREWRLYLGDYKSPLFQDNQRRGPILHNDQDIPCADTFQPQPAESV
FT GSPQGISKFPSLDDIPESFWDDIFN"
FT CDS complement(1351. .2427)
FT /codon_start=1
FT /product="replication-associated protein"
FT /note="REP"
FT /protein_id="AGH30039.1"
FT /translation="MPPPKRFTVNAKNFFLTYPHCSLTKEETLSQLQALKTPTNKKFIR
FT VTREFHEDGEPHLHVLIQFEGKFKCQNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKTYM
FT EKDGDFIDFGNFQIDGRSARGGCQTANDTYAKVLNAENLSKALNILKEEQPRDYVLHLD
FT KIQSHVQKIFAKAPAPWVPLFELSSFTHVPDEMQQWADEYFGRGAAARPERPISIIIEG
FT DSRTGKTMWARALGSHNYLSGHLDFNSKVYSNEVEYNVIDDVTPQYLKMKHWKELIGSQ
FT RDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLDKHENASLRAWTLHNAKFIFLN
FT SPLYQATTQSSQTKNNPA"
FT CDS complement(1986. .2270)
FT /codon_start=1
FT /product="AC4 protein"
FT /note="AC4"
FT /protein_id="AGH30037.1"
FT /translation="MGNLISMCLFNSKANSNVRINDSSTWYPQQDQHISIQTFRELKAR
FT PTSRPIWKKTETSLILEISRSMEDQQEEAAKLPMTLMQRFLTQKIYPRP"
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SQ Sequence 2561 BP; 688 A; 470 C; 589 G; 814 T; 0 other;
kc706641 Length: 2561 12-MAY-2013 Type: N Check: 4222 ..
1 accggatggc cgcgcgattt ttttaagtgg tcccactgtg agtgaccaat
51 cagattgtgt cctgggcggt tatttatttc gaaatactta agcgctaagt
101 tgttaaagtt gtataaatta gacattcgta agtggtcgac atactttaat
151 tcaaaatgcc aaagcgagat gccccatggc gtatagtggc agggaccacg
201 aaagtatccc gctcttctaa ttattcacct cggggaggta tacccaagcg
251 ggatgcttgg gtaaacaggc ccatgtacag gaagcccagg atatatcgta
301 cgttgagagg gcctgatgtt cctaaagggt gtgaaggccc atgtaaagtt
351 caatcctatg agcaacgtca tgacatttct catcttggca aggtgatgtg
401 tatctctgat gtgacacgtg gtaatggtat tacacaccgt gttggtaagc
451 gtttttgtgt taagtctgtg tacatattgg gtaagatatg gatggacgaa
501 aatattaaac tgaagaacca taccaacagt gttatttttt ggttagtgag
551 ggatcgtaga ccctatggga cacctatgga ttttggtcag gtgtttaaca
601 tgtttgataa tgagcctagt actgctacgg tgaagaacga tcttcgtgat
651 cgttatcaag tcatttatcg attcaatgct aaggttacgg gtggacagta
701 tgctagcaac gagcaagctc ttgttcggcg tttctggaag gtcaataatc
751 acgtggttta caatcatcag gaagcaggga aatatgagaa tcatacggag
801 aatgctctgt tattgtatat ggcatgtaca catgcctcta atcccgtgta
851 tgctactttg aaaattcgga tctattttta tgattcgatt tcaaattaat
901 aacgtttaaa ttttattgaa tgattttcga gtacataact tacataagat
951 ttgtctgttg cgaaacgaac agctcttatt acattgttaa tggaaataat
1001 acctaattga ttcagataca ataaaacgaa atatctaaat ctagttaaat
1051 atgtcatccc agaagctctc agggatgtcg tccagacttg gaaatttaga
1101 aatgccttgt ggagacccaa cgctttccgc aggttgtggt tgaaacgtat
1151 ctgcacatgg tatatcctgg tcgttgtgta agatgggtcc tcgacgttgg
1201 ttatcttgaa atagagggga tttgtaatct cccaaataaa gacgccattc
1251 tctgcttgag gcacagtgat gggttccgcg gtgcgtgaat ccattatttc
1301 tacagttgat gtggatgtat atggagcagc cgcagtttag gtctatgcgt
1351 ttacgccggg ttgttttttg tttggctgct ctgtgtcgtg gcttgataga
1401 ggggggagtt gaggaagatg aatttagcat tatgcagtgt ccaagctctt
1451 agagatgcat tttcatgttt gtcaaggaag tctttataac tagccccctc
1501 tcctggattg caaagcacga ttgatgggat ccctccttta atttgaaccg
1551 gctttccgta cttgcaattg ctttgccagt cacgctggga cccaataagt
1601 tctttccagt gcttcatttt tagatattgt ggtgtgacat catcaatgac
1651 gttatactcc acttcatttg aataaacttt agaattaaaa tccaagtgtc
1701 cactcaaata attatgtgat cctagtgcac gagcccacat agtcttcccc
1751 gtcctggaat caccctcaat gatgatacta ataggtcttt ccggccgcgc
1801 agcggcaccc cttccgaaat actcatcagc ccattgctgc atctcatcag
1851 gaacgtgagt aaaggaagat aattcaaata gagggaccca tggggctgga
1901 gcctttgcaa atattttttg gacatgtgat tgtattttat ccaaatgaag
1951 aacataatct ctaggttgtt cttcttttaa tatatttaag gccttggata
2001 gattttctgc gttaagaacc tttgcataag tgtcattggc agtttggcag
2051 cctcctcttg ctgatcttcc atcgatctgg aaatttccaa aatcaatgaa
2101 gtctccgtct ttttccatat aggtcttgac gtcggacgag cttttagctc
2151 cctgaatgtt tggatggaaa tgtgctgatc ttgttgggga taccaagtcg
2201 aagaatcgtt gattctgaca tttgaatttg ccttcgaatt gaataagcac
2251 atggagatga ggttccccat cttcgtgaaa ttctctggtt acacgaataa
2301 atttcttgtt tgttggtgtt ttaagtgcct gtaattggga aagtgtttcc
2351 tctttggtta atgaacaatg agggtatgta aggaagaaat tttttgcatt
2401 tacagtgaaa cgctttggcg gtggcattgt agtaaataag aagatgagac
2451 ccgatagctc tccttcaaac ttggcgaaat gaattgggga atgggtctca
2501 atatatagta gagtccatta tagaatataa ttgccacgtg gcggccatcc
2551 gatataatat t