Sequence of DPV Tomato leaf curl Karnataka virus
Tomato leaf curl virus strain MPT [Coimbatore; Tamil Nadu] segment DNA-A, complete sequence.
ACC No: KC713784
Dated: 2013-06-17 | Length: 2760 | CRC: -136250640
ID KC713784; SV 1; circular; genomic DNA; STD; VRL; 2760 BP.
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AC KC713784;
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DT 17-JUN-2013 (Rel. 117, Created)
DT 17-JUN-2013 (Rel. 117, Last updated, Version 1)
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DE Tomato leaf curl virus strain MPT [Coimbatore; Tamil Nadu] segment DNA-A,
DE complete sequence.
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KW .
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OS Tomato leaf curl virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2760
RA Deivamani M., Ganapathy T., Rabindran R., Nagarajan P.;
RT "The molecular characterization of Tomato leaf curl virus in different
RT regions of Tamil Nadu, India";
RL Unpublished.
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RN [2]
RP 1-2760
RA Deivamani M., Ganapathy T., Rabindran R., Nagarajan P.;
RT ;
RL Submitted (04-MAR-2013) to the INSDC.
RL Plant Pathology, Tamil Nadu Agricultural University, Lawely Road,
RL Coimbatore, Tamil Nadu 641003, India
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CC ##Assembly-Data-START##
CC Assembly Method :: Gene Runner v. 4.0
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .2760
FT /organism="Tomato leaf curl virus"
FT /segment="DNA-A"
FT /host="tomato"
FT /strain="MPT [Coimbatore; Tamil Nadu]"
FT /mol_type="genomic DNA"
FT /country="India:Tamil Nadu, Coimbatore"
FT /isolation_source="leaves"
FT /collected_by="M. Deivamani"
FT /collection_date="05-Feb-2012"
FT /db_xref="taxon:28350"
FT gene 144. .491
FT /gene="AV2"
FT CDS 144. .491
FT /codon_start=1
FT /gene="AV2"
FT /product="precoat protein"
FT /protein_id="AGN90713.1"
FT /translation="MWDPLLNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDL
FT ISVIRARNYVEATSRYNHFHSRFEGTPPSQLRQPICEPCCCPHCPRHQSKGMGEQAHVP
FT EAQNVQDVQKP"
FT gene complement(295. .612)
FT /gene="AC5"
FT CDS complement(295. .612)
FT /codon_start=1
FT /gene="AC5"
FT /product="AC5"
FT /protein_id="AGN90714.1"
FT /translation="MGQPNTPSNIRKTNNLTHVTNIMSCIKRLHLTWAFTSLRNIRASV
FT HPVHSGLPVHGPVRPCLCFGDADNGGSSTVHIWAVEVETAAYLRSGSGNDYICWSLRHN
FT F"
FT gene 304. .1074
FT /gene="AV1"
FT CDS 304. .1074
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /protein_id="AGN90715.1"
FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYVNRAAAPIVRVTKAKAWA
FT NRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSFDARHDIGHMGKVICLSDVTRGIGLTHR
FT VGKRFCVKSLYFVGKIWMDENIKTKNHTNTVMFWIVRDRRPSGTPNDFQQVFNVYDNEP
FT STATVKNDQRDRFQVLRRFQATVTGGQYAAKEQAIIRKFYRVNNYVVYNHQEAGKYENH
FT TENALLLYMACTHASNPVYATLKLRSYFYDSVSN"
FT gene complement(1071. .1475)
FT /gene="AC3"
FT CDS complement(1071. .1475)
FT /codon_start=1
FT /gene="AC3"
FT /product="replication enhancer protein"
FT /protein_id="AGN90716.1"
FT /translation="MDSRTGELITAAQAENGVFIWEIQNPLYFKITEHHNRPFLMNQDI
FT ITVQIQFNHNLRKALGIHKCFLAFRIWMTSRLPTGRFLRVFKTQVLKYLNNLGVISINN
FT VIRSVDHVLWNVLHHVVYVNQSYSIKFNLY"
FT gene complement(1216. .1620)
FT /gene="AC2"
FT CDS complement(1216. .1620)
FT /codon_start=1
FT /gene="AC2"
FT /product="transcriptional activator protein"
FT /protein_id="AGN90717.1"
FT /translation="MRSSSPSKAHSTQVPIKVQHRLAKKGTRRRRVDLPCGCSYFIALA
FT CHNHGFTHRGTHHCSSSREWRVYLGDSKSPIFQDNRASQPAIPDESRHHHRSDTVQSQP
FT EESVGDTQMFPSLPNLDDLTASDWSFLKGL"
FT gene complement(1523. .2608)
FT /gene="AC1"
FT CDS complement(1523. .2608)
FT /codon_start=1
FT /gene="AC1"
FT /product="replication initiation protein"
FT /protein_id="AGN90718.1"
FT /translation="MAAPNRFKINAKNYFLTYPKCSLTKEKALSQLLNLQTPTSKKFIR
FT ICRELHEDGTPHLHVLIQFEGKFQCKNNRFFDLTSPTRSAHFHPNIQGAKSSSDVKSYM
FT EKDGDVVDHGVFQIDGRSARGGCQSANDAYAEAINAGSKIEALNILREKAPKDYVLQFH
FT NLNSNLDRIFTPPIEVYVSPFSSSSFDQVPEELEEWAAENIVSAAARPIRPISIVIEGD
FT SRTGKTMWARSLGPHNYLCGHLNLSQKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNIKYQKPVQIKGGIPTIFLCNPRPDSSYKEFLDEEKNSKLKDWALKNAIFVTLEGPL
FT YSGSNQSATQASQEGDQTSTS"
FT gene complement(2158. .2451)
FT /gene="AC4"
FT CDS complement(2158. .2451)
FT /codon_start=1
FT /gene="AC4"
FT /product="PTGS suppressor"
FT /protein_id="AGN90719.1"
FT /translation="MGLLTCMCSSSSKESSSAKTIDSSTSHPQPGQHISIRTFRELRAQ
FT AMSNPTWRKTETSLIMEFSKSMDDQLEEVANLPTTHMPRQSTQGPKLRPSIY"
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SQ Sequence 2760 BP; 748 A; 540 C; 620 G; 852 T; 0 other;
kc713784 Length: 2760 17-JUN-2013 Type: N Check: 7354 ..
1 accggatggc cgcgaatttt tttgtgggcc cttcaacgta ctaactgaca
51 aggacatgcg aaccaatcat atcacgcgct caaaggctaa ttgttttgtg
101 gtcccctatt taaacttgga caccaagtaa agtacatcgc actatgtggg
151 atccattgtt aaacgagttt cccgaaaccg ttcacggctt tagatgtatg
201 ttagcagtta aatatcttca gttagtagaa aagacttatt cccctgacac
251 attaggttac gatttaatta gggatttaat ttcagttatt agggctagaa
301 attatgtcga agcgaccagc agatataatc atttccactc ccgcttcgaa
351 ggtacgccgc cgtctcaact tcgacagccc atatgtgaac cgtgctgctg
401 cccccattgt ccgcgtcacc aaagcaaagg catgggcgaa caggcccatg
451 taccggaagc ccagaatgta caggatgtac agaagccctg atgttcctaa
501 gggatgtgaa ggcccatgta aggtgcagtc ttttgatgca agacatgata
551 ttggtcacat gggtaaggtt atttgtcttt ctgatgttac taggggtatt
601 gggctgaccc atcgagtagg gaaacgtttc tgcgtgaagt cattgtattt
651 tgttggcaaa atatggatgg acgagaacat caagactaaa aaccatacga
701 atactgttat gttttggatc gttagagata ggcgtccttc aggaacccca
751 aatgatttcc aacaagtgtt caatgtttat gataatgagc cctctacggc
801 tactgtaaag aacgaccagc gtgatcgatt tcaggttttg aggaggttcc
851 aggcaacagt aacaggtggt caatatgctg ctaaggagca ggctataatt
901 aggaagtttt atcgtgttaa caattatgtg gtttataatc atcaagaagc
951 tgggaagtat gagaatcaca ctgagaatgc tttgttgttg tatatggcat
1001 gtactcatgc ctctaacccc gtgtatgcta ctttgaagtt acggagttac
1051 ttctacgatt ctgtatcaaa ttaataaaga ttgaatttta ttgaatatga
1101 ttggtttaca tatacaacgt gatgtaatac attccataat acatgatcaa
1151 ctgatctaat tacattgtta atactgataa ctcctaagtt atttaaatac
1201 ttaagaactt gggtcttaaa gacccttaag aaacgaccag tcggaagccg
1251 tgaggtcatc cagattcgga aggctaggaa acatttgtgt atccccaacg
1301 ctttcctcag gttgtgattg aactgtatct gaacggtgat gatgtcttga
1351 ttcatcagga atggccggtt gtgatgctct gttatcttga aatatagggg
1401 attttgaatc tcccagataa acacgccatt ctctgcttga gctgcagtga
1451 tgagttcccc tgtgcgtgaa tccatggttg tggcaggcta atgctatgaa
1501 gtaagaacag ccgcaaggta gatcaactcg tcgacgtctg gtccccttct
1551 tggctagcct gtgttgcact ttgattggaa cctgagtaga gtgggccttc
1601 gagggtgacg aagatcgcat tctttaaagc ccagtcttta agtttagaat
1651 tcttttcttc atccaagaat tctttatagc tggagtcggg tcttggattg
1701 cagaggaaga ttgtgggaat tccgccttta atttgaactg gcttctggta
1751 ctttatattt gattgccagt ccctttgggc ccccatgaat tccttaaagt
1801 gctttaggta gtgggggtct acgtcatcaa ttacgttata ccaggcatca
1851 ttactgtata ccttttggct aaggtttaga tgaccacata gataattatg
1901 tggtccaagt gatctggccc acatcgtctt cccagttcta ctatcaccct
1951 caatcactat acttatgggc cttataggcc gcgcagcggc actgacgatg
2001 ttctcggcag cccactcctc aagttcttct ggaacttgat caaaggaaga
2051 agaagaaaaa ggagaaacat aaacctctat tggaggtgta aaaatcctat
2101 ctaaattaga atttaaattg tgaaattgta aaacataatc tttgggagcc
2151 ttttccctta atatattgag ggcctcaatt ttggaccctg cgttgattgc
2201 ctcggcatat gcgtcgttgg cagattggca acctcctcta gctgatcgtc
2251 catcgatttg gaaaactcca tgatcaacga cgtctccgtc tttctccatg
2301 taggatttga catcgcttga gctcttagct ccctgaatgt tcggatggaa
2351 atgtgctgac ctggttgggg atgtgaggtc gaagaatcta ttgtttttgc
2401 actggaactt tccttcgaac tggatgagca catgcaagtg aggagtccca
2451 tcttcgtgaa gctctctgca aattctaata aattttttgg aagtgggtgt
2501 ttgtagattt aataattggg aaagtgcctt ttctttagtt agagagcact
2551 tgggataagt gagaaaataa ttttttgcat ttattttaaa gcgattgggg
2601 gctgccatgt tgacttggtc aattggagtc tctcaactct ttctatgtat
2651 cggtgtactg gagtcctata tatatggaga ctctaattgc ataaatgtaa
2701 tatatgaact ttactttgaa attcaaaatc ctacgctaaa gcggccatcc
2751 gtataatatt