Sequence of DPV Citrus tristeza virus
Citrus tristeza virus isolate SY575 coat protein (CP) gene, complete cds.
ACC No: KC841815
Dated: 2013-05-29 | Length: 672 | CRC: 585805264
ID KC841815; SV 1; linear; genomic RNA; STD; VRL; 672 BP.
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AC KC841815;
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DT 29-MAY-2013 (Rel. 116, Created)
DT 29-MAY-2013 (Rel. 116, Last updated, Version 1)
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DE Citrus tristeza virus isolate SY575 coat protein (CP) gene, complete cds.
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KW .
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OS Citrus tristeza virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae;
OC Closterovirus.
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RN [1]
RP 1-672
RA Wang J., Bozan O., Kwon S.-J., Dang T., Rucker T.L., Yokomi R.K., Lee R.K.,
RA Folimonova S.Y., Krueger R.R., Bash J.A., Greer G.D., Diaz J.M.,
RA Serna R.S., Vidalakis G.;
RT "Past and future of a century old Citrus tristeza virus collection. A
RT California citrus germplasm tale";
RL Unpublished.
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RN [2]
RP 1-672
RA Wang J., Bozan O., Kwon S.-J., Dang T., Rucker T.L., Yokomi R.K., Lee R.K.,
RA Folimonova S.Y., Krueger R.R., Bash J.A., Greer G.D., Diaz J.M.,
RA Serna R.S., Vidalakis G.;
RT ;
RL Submitted (28-MAR-2013) to the INSDC.
RL Department of Plant Pathology and Microbiology, University of California,
RL Riverside, 900 University Ave., Riverside, CA 92521, USA
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CC ##Assembly-Data-START##
CC Assembly Method :: DNA Dragon v. 1.5.3
CC Assembly Name :: CTV-CP
CC Coverage :: 3
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .672
FT /organism="Citrus tristeza virus"
FT /lab_host="Citrus sinensis"
FT /isolate="SY575"
FT /mol_type="genomic RNA"
FT /country="USA:Marion street, Redlands, San Bernardino
FT County, California"
FT /isolation_source="originally from a declining tree in
FT Murray Grove"
FT /collected_by="Chester Roistacher"
FT /collection_date="1980"
FT /PCR_primers="fwd_name: CP-U-F-16054-16075, fwd_seq:
FT cwtgagcrctgctttaagggtc, rev_name: CP-U-R-16836-16814,
FT rev_seq: gatgaaactccaccatcccgata"
FT /note="SY575 is maintained in planta at the Citrus Clonal
FT Protection Program (CCPP), University of California,
FT Riverside; acronym: CTV; genotype: T30+VT"
FT /db_xref="taxon:12162"
FT gene 1. .672
FT /gene="CP"
FT CDS 1. .672
FT /codon_start=1
FT /gene="CP"
FT /product="coat protein"
FT /note="major coat protein"
FT /protein_id="AGM39412.1"
FT /translation="MDDETKKLKNKNKETKEGDNVVAAESSFGSVNLHIDPTLIAMNDV
FT RRLGTQQNAALNRDLFLTLKEKYPNLSDKDKDFHLAMMLYRLAVKSSSLQSDDDTTGIT
FT YTREGVEVDLSDKLWTDVVFNSKGIGNRTNALRVWGRTNDALYLAFCRQNRNLSYGGRP
FT LDAGIPAGYHYLCADFLTGAGLTDLECAVYIQAKEQLLKKRGADEVVVTNVRQLGKFNT
FT R"
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SQ Sequence 672 BP; 189 A; 122 C; 177 G; 184 T; 0 other;
kc841815 Length: 672 29-MAY-2013 Type: N Check: 5042 ..
1 atggacgacg agacaaagaa attgaagaac aaaaacaagg aaacgaaaga
51 aggcgacaat gttgttgcag cggagtcttc tttcggttct gtaaacttac
101 acatcgatcc gactctgata gcgatgaacg atgtgcgtcg gttgggtacc
151 caacagaatg ccgctttgaa cagagatttg tttcttactt tgaaagagaa
201 gtatcctaat ttgtctgata aagataagga ctttcactta gctatgatgt
251 tgtatcgttt agcggttaag agttcatcat tgcaaagcga tgacgacact
301 acgggtataa cgtacactcg ggagggcgtc gaagtggatt tgtctgacaa
351 actttggact gacgtcgtgt ttaattctaa gggtatcggt aaccgtacta
401 acgcccttcg agtctggggt aggactaacg atgcccttta tttagccttt
451 tgtagacaga atcgcaattt gagttatggc ggacgtccgc tagatgcagg
501 gattccggcc gggtatcatt acctgtgtgc agatttcttg accggagctg
551 gcttgactga tttagagtgt gctgtgtaca tacaagctaa agaacaattg
601 ttgaagaagc gaggggctga tgaagtcgta gttaccaatg tcaggcagct
651 tgggaaattt aacacacgtt ga