Sequence of DPV Sweet clover necrotic mosaic virus
Sweet clover necrotic mosaic virus unidentified genes, three complete cds's including fusion protein.
ACC No: L07884
Dated: 2006-04-04 | Length: 3876 | CRC: 1137551825
ID L07884 standard; genomic RNA; VRL; 3876 BP.
XX
AC L07884;
XX
SV L07884.1
XX
DT 07-JAN-1994 (Rel. 38, Created)
DT 04-APR-2006 (Rel. 87, Last updated, Version 4)
XX
DE Sweet clover necrotic mosaic virus unidentified genes, three complete cds's
DE including fusion protein.
XX
KW fusion protein.
XX
OS Sweet clover necrotic mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Dianthovirus.
XX
RN [1]
RP 1-3876
RX DOI; 10.1016/0168-1702(93)90130-F.
RX PUBMED; 8317142.
RA Ge Z., Hiruki C., Roy K.L.;
RT "Nucleotide sequence of sweet clover necrotic mosaic dianthovirus RNA-1";
RL Virus Res. 28(2):113-124(1993).
XX
FH Key Location/Qualifiers
FH
FT source 1. .3876
FT /organism="Sweet clover necrotic mosaic virus"
FT /strain="59"
FT /mol_type="genomic RNA"
FT /db_xref="taxon:28348"
FT mRNA 121. .2423
FT /product="fusion protein"
FT CDS 121. .831
FT /codon_start=1
FT /product="ORF1"
FT /db_xref="UniProtKB/TrEMBL:Q87028"
FT /protein_id="AAA47455.1"
FT /translation="MGFISFSLFDVDKLLVWVSKFNPGKILSSICNLGVDCWNRFRKWF
FT FGLNFDAHMWAVDAFMLLMPFYTEQMERVVDDFCSETQESKLEDCLELDPSVNEFFDEE
FT VYKRDEEGVMVLQRTSSRKHIKRVRAGMMQAAIKAVEKRITNRHTIFGDDMGKVDEAAV
FT RATASDICGEFKINEHHTNVLVYAAAYLAMTPDQRSIDSVKLAYNPKSQARRTLVTAVR
FT ENKAVAGFKSLEDF"
FT CDS 924. .2423
FT /codon_start=1
FT /product="ORF2"
FT /db_xref="GOA:Q87029"
FT /db_xref="InterPro:IPR002166"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="InterPro:IPR007095"
FT /db_xref="UniProtKB/TrEMBL:Q87029"
FT /protein_id="AAA47456.1"
FT /translation="MKSKRVVGLPAVSAGLKVCVHQTSLHNMIVSLERRVFRVKNAAGE
FT LVVPPKPIQNAFDSISYFRDAWLRKLSHKGQVLKSSIADVVACYSSEKRKLYQKAADSL
FT EKKPVQWRDSKVQAFIKVEKLECDTKDPVPRTIQPRSKRYNLVIGQYLRLNEKKMLDAI
FT DDVFGEKTVLSGLDNRAQGRAIAHKWRKYQNPIGIGLDASRFDQHCSVDALKFEHTFYK
FT ECFPGDQQLEQLLKWQLTNTGSALLPTGELVRYRTKVGRMSGDINTGLGNKILMCSMVH
FT AFLKETGVRASLANNGDDCVLFCEKGDYEQINRNLEQWFLCRGFEMTVEKPVDVLEKVV
FT FCRSQPVCIATQWAMVRQLGSLSRDCFSTQDWLNPKTFKDAMNALGQCNGIINDGVPIH
FT MAQAKLMHKSAETGSSIWRSLHKQMEYRWRDRLGKRTNLLWSEVEDATRLSYFRAFSIE
FT PYVQRIVEEYLSQVEVTCEGRETNVLPTHYSRIHKDLIKSR"
FT CDS 2424. .3440
FT /codon_start=1
FT /product="ORF3"
FT /db_xref="GOA:Q87030"
FT /db_xref="HSSP:2TBV"
FT /db_xref="InterPro:IPR000937"
FT /db_xref="UniProtKB/TrEMBL:Q87030"
FT /protein_id="AAA47457.1"
FT /translation="MSTKAPKKSKQRSKPRNRNPSTSVKTVTIPFAKTQIVKTVNPPPK
FT PTKAALHTQLVLSVVGSIALRANNGKASQRFRLNPSNPALFPTIAYEAANYDMYRMKKL
FT TLRYVPLVTVQNSGRVAMIWDPDSQDSVPQSRQEISAYSRSISTAVYEKCSLTIPADNQ
FT WRFVADSNVVDRKLVDYGQLLFVNHSGSEGIETGDVFLECEVEFKGPQPTATVVQRGII
FT DRGGVLTGEGPSYLLPTDIVITATGISMNLDVAGTYLVTLVVTSSGSGNLQVLGNSTLV
FT GDFRTAYSGINFIATFVLTSTGVPSPTSSILFNESTGVTRAQFSIVRSKPSNAYVFG"
XX
SQ Sequence 3876 BP; 1065 A; 888 C; 1000 G; 923 T; 0 other;
l07884 Length: 3876 04-APR-2006 Type: N Check: 9583 ..
1 taaacgtttc accggtttgt aaattggaac ttcgtagttc gccagacgcc
51 ttcttcgtat caaggaactg gaaattgtac ggtgagtctg tcattttatt
101 ttctactttt cgtaccagtc atgggtttta ttagtttttc gctttttgat
151 gtggataaat tgttggtatg ggtgagcaaa tttaacccag gtaagatact
201 gtcttccata tgcaacttgg gtgtggactg ttggaaccgc ttccgtaagt
251 ggttctttgg cctcaacttc gatgcgcata tgtgggccgt ggatgctttt
301 atgctgctca tgccatttta cacggagcag atggaacgtg tagtcgacga
351 cttctgcagc gaaacccaag aatccaaatt agaagactgt ttggaattgg
401 acccctccgt taacgagttc ttcgatgagg aggtgtacaa gagagatgag
451 gagggcgtga tggttctcca aaggacgagc agccgtaagc acatcaaacg
501 tgtgcgcgct gggatgatgc aagcggcaat taaggccgta gagaagagaa
551 tcacaaatcg tcacaccatc tttggtgatg acatgggtaa ggtggatgaa
601 gctgctgtta gggccaccgc tagcgatatt tgcggtgagt tcaaaatcaa
651 cgaacaccac accaacgtgt tggtgtatgc cgcagcatac cttgccatga
701 caccagacca acggtcgatt gacagtgtca agctcgccta caatccaaag
751 agtcaagcca ggcgaacttt ggtcacagcc gttcgtgaga acaaggctgt
801 tgccgggttc aaatcccttg aggattttta ggcggtccac tcagctttcc
851 ggtcgaagat gccccatacc ctatcctagg catcccggaa atcagggtag
901 ctgagaagcg ggccagtaga gtcatgaaaa gtaagagagt cgtagggtta
951 cctgctgtta gtgcgggtct taaggtttgc gtccatcaaa cctccctaca
1001 taatatgata gttagtctcg aacgtagggt cttccgagtg aagaacgctg
1051 cgggagagtt agtagtacct cccaaaccaa tccaaaatgc atttgactct
1101 atttcctatt tccgcgatgc gtggttaagg aaactgtctc acaagggtca
1151 agtgctaaaa tcctccatag ctgacgtcgt cgcatgctac tcctctgaaa
1201 agaggaaact atatcaaaag gcggctgact ctttggagaa gaaacccgta
1251 caatggaggg attccaaggt gcaagcattc atcaaagtag aaaaacttga
1301 atgtgacact aaagatcccg tgcctcgcac gattcagcct cggtccaaaa
1351 ggtacaacct agtgatagga caatacctca gactgaatga gaagaagatg
1401 ctggacgcca tagacgacgt ctttggagag aagacagttc tgtcgggttt
1451 ggataacagg gcccaaggga gggccatcgc ccacaagtgg cgtaaatacc
1501 agaaccccat cgggatcggc ttagatgcat cgagattcga tcagcattgt
1551 agcgtggatg ccctcaaatt cgagcacacc ttctacaagg agtgttttcc
1601 tggggatcaa cagttggagc aattattgaa atggcagtta accaatacag
1651 ggtctgcatt attgccaact ggagaactgg tcagataccg caccaaagtg
1701 ggtcgcatga gcggcgacat aaacacaggc cttgggaaca agattctcat
1751 gtgcagcatg gtgcacgcat tcctgaagga gacgggtgtg cgggcttcgt
1801 tagccaataa cggcgacgac tgtgtccttt tctgtgagaa gggagattat
1851 gagcagataa accgcaatct tgagcaatgg ttcctgtgca ggggtttcga
1901 aatgaccgtc gagaaacctg tcgatgtact cgagaaggtg gtgttctgtc
1951 gtagtcaacc ggtttgcatt gccacgcaat gggctatggt aaggcaattg
2001 gggagtttgt caagagactg cttctcaacg caggattggt tgaacccaaa
2051 gacatttaaa gatgcaatga acgcgcttgg acaatgcaat ggaatcatca
2101 atgatggtgt gcccatacac atggctcagg ctaaattgat gcataaatcg
2151 gcggaaaccg gaagttcaat ctggaggtca ctccacaagc aaatggagta
2201 ccgctggaga gatcgtctcg gtaaaagaac aaatctattg tggagtgagg
2251 ttgaggatgc cacgagactg tcatacttta gagcattcag tatagaacct
2301 tacgtacaga ggatagtgga ggagtacctc tctcaagtcg aagtaacttg
2351 tgaggggcga gaaacaaacg tattacctac acactattct agaatccaca
2401 aagatctaat caaatcccga taaatgtcta caaaagctcc caagaaatcc
2451 aaacaacggt ccaagcccag gaaccggaac ccaagtacta gtgtcaagac
2501 ggtgaccata cctttcgcga agacgcaaat cgtaaagacc gtgaaccctc
2551 cacccaagcc aacaaaggct gcgttacaca cccagttggt gttgagtgta
2601 gtaggttcca ttgcgttgcg cgccaataat ggcaaggcca gtcaaaggtt
2651 taggttaaac ccgagtaacc cggcactatt tcccaccata gcatacgaag
2701 ccgcaaatta tgacatgtac cgaatgaaga aactgacact ccgctacgtc
2751 cccctcgtaa ccgtgcaaaa ttccgggcga gtggcaatga tatgggatcc
2801 cgactctcaa gactcggttc cccagtcgcg acaggagata tcagcctatt
2851 ctcggtcaat ctcgactgcc gtgtacgaga aatgctcgtt gacgattccg
2901 gcggataatc aatggcgctt cgttgcagac agcaatgttg ttgacaggaa
2951 actggtcgat tacggccaat tgttgttcgt caaccattct gggagtgagg
3001 gaatagaaac cggagatgtg ttcctcgaat gtgaagtcga gtttaagggc
3051 ccccagccta ccgccacagt ggtccagaga gggatcatag atcgcggagg
3101 ggtgctcacc ggcgaaggac catcttactt gctacctact gacattgtca
3151 tcaccgcgac ggggatatca atgaacctgg atgtcgctgg aacttatctc
3201 gtcaccttgg tagtgacttc ttctggcagt ggcaacctcc aagtgttggg
3251 gaattcaacc ttggtcggtg actttagaac ggcgtatagt gggattaact
3301 ttatagctac gtttgtgctc accagcactg gcgttccatc acccacatct
3351 agtatactgt tcaatgagtc aaccggggtc acccgcgcac agttcagcat
3401 cgtgagatcg aagccgtcga acgcctatgt atttggttaa tgcaagcgta
3451 acctccatcc gagttgcaag agagggaaac gcagtctcgc cgaccctgtt
3501 gccaaacagt aaaattggaa aaaatagagt gttaggagta gttcccgtac
3551 ccgcgggaca agaacctatt gtagtagacg aaccggtctc ggaccctggt
3601 aaacaggtac ctagcgtaat agaaggtcgc tagaaatcgg gtgggcttca
3651 cctacgggta acccaccgtc gagagggaaa acctctgtgt ggttgtgcgc
3701 acgtcgtttc ctgaagaatc tcactgcagt agttatttcc ttttcctttt
3751 aggctagaag cacttgctac ggagggcgca taccttcggt taaacaaaat
3801 tggcccctga gagtagaaaa ctcaggttaa taaaacagga gattatttgc
3851 ttagtcgtat aacggctaag cacccc