Sequence of DPV Rice hoja blanca virus
Rice hoja blanca virus nonstructural protein 3 and nucleoprotein genes, complete cds.
ACC No: L07940
Dated: 2007-09-25 | Length: 2299 | CRC: 376418285
ID L07940; SV 1; linear; genomic RNA; STD; VRL; 2299 BP.
XX
AC L07940;
XX
DT 07-JAN-1993 (Rel. 34, Created)
DT 25-SEP-2007 (Rel. 93, Last updated, Version 6)
XX
DE Rice hoja blanca virus nonstructural protein 3 and nucleoprotein genes,
DE complete cds.
XX
KW N gene; nonstructural protein NS3; NS3-glycoprotein; nucleoprotein;
KW ribonucleoprotein.
XX
OS Rice hoja blanca virus
OC Viruses; ssRNA negative-strand viruses; Tenuivirus.
XX
RN [1]
RP 1-2299
RX PUBMED; 8046420.
RA de Miranda J., Hernandez M., Hull R., Espinoza A.M.;
RT "Sequence analysis of rice hoja blanca virus RNA 3";
RL J. Gen. Virol. 75(Pt 8):2127-2132(1994).
XX
FH Key Location/Qualifiers
FH
FT source 1. .2299
FT /organism="Rice hoja blanca virus"
FT /strain="Costa Rica"
FT /mol_type="genomic RNA"
FT /db_xref="taxon:12332"
FT misc_structure 1. .20
FT CDS 96. .707
FT /codon_start=1
FT /product="nonstructural protein 3"
FT /note="NS-3; putative"
FT /db_xref="InterPro:IPR007974"
FT /db_xref="UniProtKB/TrEMBL:Q67897"
FT /protein_id="AAA53423.1"
FT /translation="MNVSLYYSGTPVSSHSLLSKNGLSNIVLTCKDLPIPIDLLSLFFD
FT ILNERHPSFDEHMFLQMIRKPDDPENLSVFLKSAIWMLSHKRDLPGHYRLPLTCLVSTY
FT SEYFVELKPRQPSTKCWFCKIAKDGLPFRVEGVHGFPSEAELYIVPSKEHAIESFEVLS
FT GKKLYRSPSKKKHGYLIASNKPPLTSKYVEYDPSKPDTKP"
FT stem_loop 708. .1224
FT repeat_region 940. .956
FT repeat_region 1150. .1166
FT CDS complement(1225. .2184)
FT /codon_start=1
FT /product="nucleoprotein"
FT /function="ribonucleoprotein"
FT /note="N-protein"
FT /db_xref="GOA:Q67898"
FT /db_xref="InterPro:IPR008864"
FT /db_xref="UniProtKB/TrEMBL:Q67898"
FT /experiment="experimental evidence, no additional details
FT recorded"
FT /protein_id="AAA53424.1"
FT /translation="MTMSVADVQTEIERVTTLALKYITDHKDTLVTFVGQIEYNGYDAG
FT KLLQILKRKAEGRDFGKDLCYLLVMRYTRGTGFVRDVRKKIKTAAGGDTAHEIVTHYGV
FT VQSVGDNADAITLGRLASLFPAVSMNIVRNVSTGAKLAVDSSDLGSSGLDLLLWDFVPQ
FT FITLDSLTAPYCTGKGMNTILFSLHVLHGALTTKKTMPDQKKKARSLVTDFELVKYTTE
FT LLVITCNAKNLKVEKKTIYRESLMRPFQEGAGDALGFKETFWTSLAKVSTGCVRKMKKD
FT AQAYLSERTPLLKVFVENCNKSEDEVAEAIKSYFVTGA"
FT misc_structure 2279. .2299
XX
SQ Sequence 2299 BP; 667 A; 510 C; 410 G; 712 T; 0 other;
l07940 Length: 2299 25-SEP-2007 Type: N Check: 6970 ..
1 acacaaagtc ctgggtataa aaaaacaaac aaagatataa gaagagaaaa
51 actttagtga cttgatatct aattacagga atcatatagt acaagatgaa
101 cgtgtccttg tactacagcg ggactcctgt ctctagtcat agcttgctca
151 gcaagaatgg tctgtcaaac attgttttga cttgtaagga tctacccata
201 cccattgatc tcttgtctct tttctttgat atcctcaatg aacgacaccc
251 aagcttcgat gaacacatgt ttttacaaat gattaggaag ccagatgatc
301 ctgagaattt gtctgttttc ttgaagagtg cgatatggat gctctctcac
351 aagagagatt tgccagggca ttacagactg cctctgactt gtttggtttc
401 aacatatagt gagtattttg ttgaactaaa gcctcggcag ccatcaacaa
451 aatgctggtt ttgtaagata gccaaggatg gattgccttt tagagtcgaa
501 ggtgtccatg gcttcccgtc agaagcagag ctatacattg tcccttcaaa
551 agagcatgca atcgagagct ttgaagtgct cagcgggaag aagttataca
601 gatctcctag caagaagaaa catggatatt tgatagcttc aaataagcca
651 ccactgactt ccaaatatgt cgagtatgac cccagcaaac ccgatactaa
701 accatgaatg cactcattac tgcttccact ttaggcttgg tctactctcc
751 atggttgtga acctaacaga gccttcaact ctctgagatt ctctcatctc
801 gaacaaaaac aaataggcta agcctatttt ctcttaaaaa tagtatctgt
851 gctaagcaca gcatccggat attgtttcgg atggttttta cctaacctaa
901 tttttttgga tttttgttta ttttttgatt tttttgatta tttacatatt
951 tacaagattt ttcatggttt tttcattttt ttagttttgt tttccttgat
1001 atacactcaa atagcaagta catggttaat ttactttcaa ggcatagcac
1051 actcaacaca cataataatg atatatagga caagatacta atttaaacaa
1101 caatatagaa tatagaactt aaaagctaat gagattcata catatgataa
1151 tttacatatt tacaaccaat ctgatttctc atcctttcca gcttcatcta
1201 ccatctcaat ctgaactctc cattttatgc cccagtgaca aagtagcttt
1251 tgatcgcctc agcaacctca tcctcactct tgttgcagtt ctccacaaat
1301 actttcagta gaggagttct ctctgacaaa tatgcttgtg catctttttt
1351 catctttctg acacaccccg tggagacctt tgctagagag gtccagaaag
1401 tctctttgaa tccaagagca tctccagcgc cttcttggaa aggcctcatc
1451 aaagactctc tataaattgt cttcttctct accttgagat tcttggcatt
1501 acaagtgatg accaataatt cagttgtata tttcaccaac tcaaaatcag
1551 tcacaaggct tctagccttc ttcttctgat caggcatggt cttcttagtg
1601 gttagagcac catgcaagac atgcaaggag aagagaattg tgttcatgcc
1651 ttttcctgtg cagtaagggg cagtcagaga gtccagagtg ataaactgag
1701 gaacaaagtc ccagaggagg aggtctaagc ctgatgaccc taaatctgaa
1751 gagtcaaccg ctagcttggc tccagttgat acattcctca ctatgttcat
1801 tgacacagca gggaacagtg acgcaagtct gcctagagtt atagcatcag
1851 cattatctcc aacagattgc acaactccat aatgtgtcac tatctcatgt
1901 gcagtgtcac ctccagctgc tgtcttgatc ttctttctaa catctctgac
1951 aaacccagta cccctggtgt atctcatcac caagagataa cagagatcct
2001 ttccaaaatc tctcccttca gcctttctct tcaagatctg gaggagcttg
2051 cctgcatcat agccattgta ctctatctga ccaacaaaag tcactagcgt
2101 gtccttgtga tcagttatgt acttgagggc tagtgtagtg accctctcaa
2151 tctcagtctg aacatcagca actgacatcg tcattgttgc aaccacagtt
2201 atgtcttcac gaatgggggc aattgtaaga tttatcagaa gtacgtttca
2251 gaaaacactc ttgcttgatg atctttacaa tgctacccag actttgtgt